Wall clock time and date at job start Mon Mar 30 2020 07:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99770 * 2 1 4 4 H 1.48496 * 109.47117 * 269.99861 * 3 2 1 5 5 H 1.48501 * 109.47010 * 29.99932 * 3 2 1 6 6 H 1.48506 * 109.47147 * 149.99518 * 3 2 1 7 7 C 1.37880 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47482 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 O 1.42898 * 109.47319 * 180.02562 * 12 11 10 14 14 C 1.35900 * 117.00172 * 179.97438 * 13 12 11 15 15 C 1.38746 * 120.05467 * 359.72752 * 14 13 12 16 16 C 1.38131 * 119.94707 * 179.69741 * 15 14 13 17 17 C 1.38290 * 120.04957 * 0.59675 * 16 15 14 18 18 C 1.38250 * 120.11062 * 359.67603 * 17 16 15 19 19 C 1.50704 * 119.96871 * 180.02562 * 18 17 16 20 20 N 1.46898 * 109.47159 * 270.02290 * 19 18 17 21 21 C 1.38162 * 120.05723 * 0.02573 * 18 17 16 22 22 H 0.97000 * 120.00500 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47060 * 60.00183 * 9 7 2 24 24 H 1.09001 * 109.46927 * 300.00378 * 9 7 2 25 25 H 1.09002 * 109.47153 * 60.00002 * 10 9 7 26 26 H 1.09001 * 109.46832 * 300.00193 * 10 9 7 27 27 H 1.09002 * 109.47103 * 59.99753 * 11 10 9 28 28 H 1.08998 * 109.46862 * 300.00565 * 11 10 9 29 29 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 30 30 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 31 31 H 1.08010 * 120.02919 * 359.97292 * 15 14 13 32 32 H 1.07993 * 119.97567 * 180.29505 * 16 15 14 33 33 H 1.07997 * 119.94208 * 179.70200 * 17 16 15 34 34 H 1.09003 * 109.46632 * 30.02434 * 19 18 17 35 35 H 1.08996 * 109.46429 * 150.02007 * 19 18 17 36 36 H 1.00902 * 110.99901 * 180.02562 * 20 19 18 37 37 H 1.00895 * 110.99940 * 303.95620 * 20 19 18 38 38 H 1.07998 * 120.02891 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7002 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0010 11 6 5.5516 -2.6365 0.0022 12 6 6.0616 -4.0789 0.0028 13 8 7.4906 -4.0789 0.0045 14 6 8.1076 -5.2898 0.0057 15 6 7.3531 -6.4541 0.0109 16 6 7.9826 -7.6837 0.0058 17 6 9.3637 -7.7547 0.0080 18 6 10.1177 -6.5959 0.0085 19 6 11.6225 -6.6769 0.0103 20 7 12.1098 -6.7034 1.3958 21 6 9.4928 -5.3637 0.0074 22 1 -0.4851 0.8400 -0.0004 23 1 3.8746 -0.6800 0.8912 24 1 3.8752 -0.6803 -0.8888 25 1 3.6587 -3.1501 -0.8893 26 1 3.6579 -3.1505 0.8907 27 1 5.9142 -2.1229 0.8927 28 1 5.9156 -2.1222 -0.8872 29 1 5.6990 -4.5929 -0.8875 30 1 5.6976 -4.5927 0.8925 31 1 6.2744 -6.3992 0.0145 32 1 7.3957 -8.5903 0.0051 33 1 9.8540 -8.7169 0.0089 34 1 11.9380 -7.5852 -0.5033 35 1 12.0337 -5.8078 -0.5030 36 1 13.1170 -6.7572 1.4239 37 1 11.7763 -5.9031 1.9118 38 1 10.0823 -4.4587 0.0074 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385823493.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:31 Heat of formation + Delta-G solvation = -38.000924 kcal Electronic energy + Delta-G solvation = -16915.165105 eV Core-core repulsion = 14142.807253 eV Total energy + Delta-G solvation = -2772.357853 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.24252 -38.00966 -35.11752 -34.65240 -32.45529 -30.94631 -30.21090 -29.00605 -25.70409 -24.83862 -22.65103 -22.06988 -20.66743 -20.14302 -17.89853 -16.67080 -16.33741 -16.18268 -16.15847 -15.78380 -14.87374 -14.51123 -14.23287 -14.20137 -13.56077 -13.22632 -12.72622 -12.64129 -12.53560 -12.10816 -11.81614 -11.69178 -11.58372 -11.10212 -10.95017 -10.69674 -10.49730 -9.94459 -9.75595 -9.64246 -9.23461 -9.19854 -8.95409 -8.54543 -8.25831 -6.05142 -4.03399 1.12412 1.34764 3.19674 3.30724 3.38126 3.42184 3.57870 4.37548 4.44873 4.51431 4.65879 4.87005 4.99068 5.10952 5.14536 5.17941 5.27443 5.29141 5.34771 5.48993 5.49616 5.83155 5.87440 5.94045 6.15454 6.24050 6.31731 6.40890 6.53031 6.61083 6.64446 6.69904 6.86256 7.02570 7.27373 7.40704 7.42583 7.78292 8.52626 8.99408 9.57355 11.08297 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.050139 B = 0.003061 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.310848 B = 9144.757454 C = 9594.232565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.099 4.099 11 C -0.120 4.120 12 C 0.060 3.940 13 O -0.317 6.317 14 C 0.137 3.863 15 C -0.208 4.208 16 C -0.080 4.080 17 C -0.143 4.143 18 C -0.051 4.051 19 C 0.102 3.898 20 N -0.846 5.846 21 C -0.153 4.153 22 H 0.263 0.737 23 H 0.017 0.983 24 H 0.012 0.988 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.130 0.870 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.082 0.918 35 H 0.037 0.963 36 H 0.343 0.657 37 H 0.344 0.656 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.587 -13.966 0.008 26.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.137 4.137 11 C -0.157 4.157 12 C -0.015 4.015 13 O -0.230 6.230 14 C 0.091 3.909 15 C -0.227 4.227 16 C -0.098 4.098 17 C -0.162 4.162 18 C -0.052 4.052 19 C -0.028 4.028 20 N -0.376 5.376 21 C -0.172 4.172 22 H 0.073 0.927 23 H 0.035 0.965 24 H 0.031 0.969 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.148 0.852 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.100 0.900 35 H 0.055 0.945 36 H 0.155 0.845 37 H 0.157 0.843 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 22.102 -14.326 0.067 26.339 hybrid contribution 0.508 1.653 -0.270 1.750 sum 22.610 -12.673 -0.204 25.920 Atomic orbital electron populations 1.69917 1.06313 1.26908 1.51180 1.25046 0.94751 0.99240 0.94551 0.86761 0.80371 0.83540 0.78521 1.20291 1.21391 1.18962 1.21151 0.89513 0.94479 1.50831 0.91048 1.19565 0.97102 0.92008 0.96406 1.21402 0.90454 1.00459 1.01392 1.21721 0.97876 0.93006 1.03124 1.23055 0.76817 1.00348 1.01289 1.86088 1.22532 1.26438 1.87969 1.19013 0.92154 0.84693 0.95006 1.21371 1.00509 0.92429 1.08413 1.20957 0.94556 0.97052 0.97276 1.20863 0.93543 0.97856 1.03891 1.19496 0.94958 0.92366 0.98367 1.20691 0.90715 1.01218 0.90170 1.58709 1.15515 1.50295 1.13111 1.20267 0.91613 0.97885 1.07452 0.92733 0.96499 0.96949 0.92521 0.92495 0.91322 0.91332 0.92013 0.92005 0.85218 0.85765 0.86024 0.90009 0.94465 0.84453 0.84309 0.85669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.06 13.96 55.43 0.77 -27.29 16 2 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 7 C -0.52 -14.95 9.66 -34.44 -0.33 -15.29 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 10 C -0.10 -1.91 5.15 -26.74 -0.14 -2.05 16 11 C -0.12 -1.92 5.58 -26.74 -0.15 -2.07 16 12 C 0.06 0.83 4.74 37.16 0.18 1.01 16 13 O -0.32 -4.65 10.14 -19.43 -0.20 -4.84 16 14 C 0.14 1.82 6.69 -39.22 -0.26 1.55 16 15 C -0.21 -2.49 9.04 -39.43 -0.36 -2.84 16 16 C -0.08 -0.84 10.04 -39.60 -0.40 -1.23 16 17 C -0.14 -1.43 9.70 -39.56 -0.38 -1.82 16 18 C -0.05 -0.52 5.39 -104.64 -0.56 -1.09 16 19 C 0.10 0.79 6.91 -4.98 -0.03 0.75 16 20 N -0.85 -6.11 9.61 -11.41 -0.11 -6.22 16 21 C -0.15 -1.78 9.64 -39.43 -0.38 -2.16 16 22 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 23 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 24 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 27 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 0.80 7.68 -51.93 -0.40 0.41 16 30 H 0.06 0.81 7.65 -51.93 -0.40 0.41 16 31 H 0.13 1.43 6.30 -52.48 -0.33 1.10 16 32 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.08 0.56 8.09 -51.93 -0.42 0.14 16 35 H 0.04 0.26 8.08 -51.93 -0.42 -0.16 16 36 H 0.34 1.72 9.08 -39.29 -0.36 1.36 16 37 H 0.34 2.44 8.98 -39.29 -0.35 2.09 16 38 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 317.65 15.07 4.79 4.79 Total: -1.00 -31.70 317.65 -8.44 -40.14 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -5.99 Total: 0.07 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: -3.03 Total: -23.85 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: 0.66 Total: -33.51 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: -0.20 Total: -4.84 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.70 -8.44 -40.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385823493.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.138 kcal (2) G-P(sol) polarization free energy of solvation -31.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds