Wall clock time and date at job start Mon Mar 30 2020 07:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99770 * 2 1 4 4 H 1.48496 * 109.47117 * 269.99861 * 3 2 1 5 5 H 1.48501 * 109.47010 * 29.99932 * 3 2 1 6 6 H 1.48506 * 109.47147 * 149.99518 * 3 2 1 7 7 C 1.37880 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47482 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 O 1.42898 * 109.47319 * 180.02562 * 12 11 10 14 14 C 1.35900 * 117.00172 * 179.97438 * 13 12 11 15 15 C 1.38746 * 120.05467 * 359.72752 * 14 13 12 16 16 C 1.38131 * 119.94707 * 179.69741 * 15 14 13 17 17 C 1.38290 * 120.04957 * 0.59675 * 16 15 14 18 18 C 1.38250 * 120.11062 * 359.67603 * 17 16 15 19 19 C 1.50704 * 119.96871 * 180.02562 * 18 17 16 20 20 N 1.46898 * 109.47159 * 270.02290 * 19 18 17 21 21 C 1.38162 * 120.05723 * 0.02573 * 18 17 16 22 22 H 0.97000 * 120.00500 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47060 * 60.00183 * 9 7 2 24 24 H 1.09001 * 109.46927 * 300.00378 * 9 7 2 25 25 H 1.09002 * 109.47153 * 60.00002 * 10 9 7 26 26 H 1.09001 * 109.46832 * 300.00193 * 10 9 7 27 27 H 1.09002 * 109.47103 * 59.99753 * 11 10 9 28 28 H 1.08998 * 109.46862 * 300.00565 * 11 10 9 29 29 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 30 30 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 31 31 H 1.08010 * 120.02919 * 359.97292 * 15 14 13 32 32 H 1.07993 * 119.97567 * 180.29505 * 16 15 14 33 33 H 1.07997 * 119.94208 * 179.70200 * 17 16 15 34 34 H 1.09003 * 109.46632 * 30.02434 * 19 18 17 35 35 H 1.08996 * 109.46429 * 150.02007 * 19 18 17 36 36 H 1.00902 * 110.99901 * 180.02562 * 20 19 18 37 37 H 1.00895 * 110.99940 * 303.95620 * 20 19 18 38 38 H 1.07998 * 120.02891 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7002 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0010 11 6 5.5516 -2.6365 0.0022 12 6 6.0616 -4.0789 0.0028 13 8 7.4906 -4.0789 0.0045 14 6 8.1076 -5.2898 0.0057 15 6 7.3531 -6.4541 0.0109 16 6 7.9826 -7.6837 0.0058 17 6 9.3637 -7.7547 0.0080 18 6 10.1177 -6.5959 0.0085 19 6 11.6225 -6.6769 0.0103 20 7 12.1098 -6.7034 1.3958 21 6 9.4928 -5.3637 0.0074 22 1 -0.4851 0.8400 -0.0004 23 1 3.8746 -0.6800 0.8912 24 1 3.8752 -0.6803 -0.8888 25 1 3.6587 -3.1501 -0.8893 26 1 3.6579 -3.1505 0.8907 27 1 5.9142 -2.1229 0.8927 28 1 5.9156 -2.1222 -0.8872 29 1 5.6990 -4.5929 -0.8875 30 1 5.6976 -4.5927 0.8925 31 1 6.2744 -6.3992 0.0145 32 1 7.3957 -8.5903 0.0051 33 1 9.8540 -8.7169 0.0089 34 1 11.9380 -7.5852 -0.5033 35 1 12.0337 -5.8078 -0.5030 36 1 13.1170 -6.7572 1.4239 37 1 11.7763 -5.9031 1.9118 38 1 10.0823 -4.4587 0.0074 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385823493.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:31 Heat of formation + Delta-G solvation = -58.484001 kcal Electronic energy + Delta-G solvation = -16916.053318 eV Core-core repulsion = 14142.807253 eV Total energy + Delta-G solvation = -2773.246066 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.15054 -38.92360 -36.59619 -35.46668 -34.44544 -31.93873 -31.27344 -30.32864 -27.04186 -25.86772 -23.54671 -23.46393 -21.81239 -21.59981 -18.97340 -18.68239 -17.31509 -17.14600 -16.98763 -16.53728 -16.29053 -15.69015 -15.45534 -15.23671 -14.82017 -14.41482 -14.05334 -13.92946 -13.85693 -13.26705 -13.14454 -13.02392 -12.56305 -12.41762 -12.37521 -11.84895 -11.73991 -11.69430 -11.50419 -11.38064 -11.30945 -10.76996 -9.94701 -9.58713 -9.15609 -8.30237 -6.34492 0.31056 0.49173 1.35906 1.37679 1.49956 2.18315 2.35922 2.76222 3.05194 3.73485 3.84187 3.90156 3.95434 4.02294 4.12136 4.23875 4.31960 4.38994 4.47560 4.48299 4.57175 4.72405 4.75220 4.79065 5.04099 5.07761 5.10865 5.12779 5.34971 5.48268 5.51149 5.59292 5.62589 5.66114 5.83234 6.16208 6.27353 6.45699 6.57188 6.73759 7.30359 8.86537 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.050139 B = 0.003061 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.310848 B = 9144.757454 C = 9594.232565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.001 3.999 3 Si 0.952 3.048 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.246 1.246 7 C -0.534 4.534 8 H 0.033 0.967 9 C -0.014 4.014 10 C -0.092 4.092 11 C -0.110 4.110 12 C 0.066 3.934 13 O -0.332 6.332 14 C 0.110 3.890 15 C -0.221 4.221 16 C -0.084 4.084 17 C -0.145 4.145 18 C -0.052 4.052 19 C 0.104 3.896 20 N -0.853 5.853 21 C -0.163 4.163 22 H 0.266 0.734 23 H 0.020 0.980 24 H 0.019 0.981 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.133 0.867 32 H 0.147 0.853 33 H 0.142 0.858 34 H 0.093 0.907 35 H 0.045 0.955 36 H 0.355 0.645 37 H 0.344 0.656 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.132 -14.290 -0.025 28.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.195 4.195 3 Si 0.775 3.225 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.170 1.170 7 C -0.572 4.572 8 H 0.051 0.949 9 C -0.051 4.051 10 C -0.130 4.130 11 C -0.147 4.147 12 C -0.009 4.009 13 O -0.247 6.247 14 C 0.065 3.935 15 C -0.240 4.240 16 C -0.102 4.102 17 C -0.164 4.164 18 C -0.053 4.053 19 C -0.026 4.026 20 N -0.385 5.385 21 C -0.182 4.182 22 H 0.075 0.925 23 H 0.039 0.961 24 H 0.038 0.962 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.151 0.849 32 H 0.165 0.835 33 H 0.159 0.841 34 H 0.112 0.888 35 H 0.063 0.937 36 H 0.170 0.830 37 H 0.156 0.844 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 24.677 -14.674 0.034 28.710 hybrid contribution -0.292 1.619 -0.256 1.665 sum 24.385 -13.055 -0.222 27.661 Atomic orbital electron populations 1.70071 1.08321 1.28189 1.52728 1.26061 0.95658 1.03673 0.94142 0.85626 0.79491 0.78106 0.79237 1.19125 1.20981 1.16957 1.21536 0.92238 0.93155 1.50318 0.94887 1.19542 0.93775 0.95101 0.96675 1.21231 0.92862 0.97535 1.01347 1.21505 0.95249 0.94653 1.03321 1.22881 0.77077 0.98876 1.02078 1.86020 1.22414 1.27588 1.88640 1.19286 0.92874 0.84515 0.96791 1.21527 1.00821 0.92752 1.08881 1.21271 0.95115 0.97327 0.96452 1.21198 0.93583 0.98736 1.02837 1.19807 0.96408 0.91830 0.97231 1.20712 0.89047 1.02199 0.90655 1.58700 1.16632 1.50347 1.12783 1.20458 0.91224 0.98839 1.07694 0.92492 0.96116 0.96222 0.92616 0.92664 0.91181 0.91085 0.91240 0.91317 0.84889 0.83550 0.84053 0.88825 0.93709 0.83026 0.84359 0.85256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.40 13.96 21.45 0.30 -60.10 16 2 C 0.00 0.07 5.47 84.65 0.46 0.53 16 3 Si 0.95 44.68 27.47 68.60 1.88 46.56 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.25 -10.71 6.54 99.48 0.65 -10.06 16 7 C -0.53 -31.15 9.66 25.60 0.25 -30.91 16 8 H 0.03 2.10 7.99 -2.91 -0.02 2.08 16 9 C -0.01 -0.63 4.04 29.85 0.12 -0.51 16 10 C -0.09 -3.48 5.15 30.59 0.16 -3.32 16 11 C -0.11 -3.37 5.58 30.59 0.17 -3.20 16 12 C 0.07 1.76 4.74 71.98 0.34 2.10 16 13 O -0.33 -9.48 10.14 -92.43 -0.94 -10.42 16 14 C 0.11 2.83 6.69 22.50 0.15 2.99 16 15 C -0.22 -5.04 9.04 22.37 0.20 -4.84 16 16 C -0.08 -1.58 10.04 22.26 0.22 -1.36 16 17 C -0.14 -2.59 9.70 22.29 0.22 -2.37 16 18 C -0.05 -0.97 5.39 -19.88 -0.11 -1.07 16 19 C 0.10 1.36 6.91 85.56 0.59 1.95 16 20 N -0.85 -10.54 9.61 -190.01 -1.83 -12.37 16 21 C -0.16 -3.63 9.64 22.36 0.22 -3.41 16 22 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 23 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 24 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 25 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.07 1.74 7.68 -2.39 -0.02 1.72 16 30 H 0.07 1.73 7.65 -2.39 -0.02 1.71 16 31 H 0.13 2.82 6.30 -2.91 -0.02 2.80 16 32 H 0.15 2.02 8.06 -2.91 -0.02 1.99 16 33 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 34 H 0.09 1.01 8.09 -2.39 -0.02 0.99 16 35 H 0.04 0.52 8.08 -2.39 -0.02 0.50 16 36 H 0.36 2.79 9.08 -89.69 -0.81 1.98 16 37 H 0.34 4.32 8.98 -89.70 -0.81 3.51 16 38 H 0.13 2.64 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -68.29 317.65 1.79 -66.50 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -0.63 Total: 13.25 kcal Atomic # 6 Polarization: -46.41 SS G_CDS: 2.99 Total: -43.42 kcal Atomic # 7 Polarization: -70.95 SS G_CDS: -1.53 Total: -72.47 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: -0.94 Total: -10.42 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.88 Total: 46.56 kcal Total: -68.29 1.79 -66.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385823493.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.015 kcal (2) G-P(sol) polarization free energy of solvation -68.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds