Wall clock time and date at job start Mon Mar 30 2020 07:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99825 * 2 1 4 4 H 1.48493 * 109.47214 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47124 * 300.00013 * 3 2 1 6 6 H 1.48500 * 109.47114 * 59.99911 * 3 2 1 7 7 C 1.37879 * 120.00449 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00139 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99449 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46844 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47213 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47213 * 180.02562 * 11 10 9 13 13 O 1.42899 * 109.47433 * 179.97438 * 12 11 10 14 14 C 1.35893 * 117.00392 * 179.97438 * 13 12 11 15 15 C 1.38736 * 120.05957 * 180.02562 * 14 13 12 16 16 C 1.38138 * 119.94337 * 180.30421 * 15 14 13 17 17 C 1.38270 * 120.05794 * 359.46080 * 16 15 14 18 18 C 1.50697 * 119.94421 * 180.26220 * 17 16 15 19 19 N 1.46901 * 109.46958 * 270.25447 * 18 17 16 20 20 C 1.38259 * 120.10998 * 0.51383 * 17 16 15 21 21 C 1.38146 * 120.05869 * 359.76954 * 20 17 16 22 22 H 0.96996 * 120.00475 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47549 * 60.00143 * 9 7 2 24 24 H 1.08993 * 109.47387 * 299.99766 * 9 7 2 25 25 H 1.09007 * 109.47084 * 59.99988 * 10 9 7 26 26 H 1.08998 * 109.47684 * 300.00749 * 10 9 7 27 27 H 1.08994 * 109.47469 * 60.00410 * 11 10 9 28 28 H 1.09001 * 109.47551 * 299.99998 * 11 10 9 29 29 H 1.09002 * 109.47184 * 60.00229 * 12 11 10 30 30 H 1.09001 * 109.46987 * 299.99936 * 12 11 10 31 31 H 1.08002 * 120.02291 * 0.02562 * 15 14 13 32 32 H 1.08004 * 119.96766 * 179.69880 * 16 15 14 33 33 H 1.08999 * 109.47575 * 30.25213 * 18 17 16 34 34 H 1.09002 * 109.47295 * 150.25537 * 18 17 16 35 35 H 1.00901 * 111.00366 * 56.04983 * 19 18 17 36 36 H 1.00903 * 111.00164 * 180.02562 * 19 18 17 37 37 H 1.08006 * 119.97187 * 179.74376 * 20 17 16 38 38 H 1.07993 * 120.03340 * 179.97438 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9870 0.0012 12 6 2.4748 -6.1499 0.0018 13 8 1.7604 -7.3875 0.0030 14 6 2.5005 -8.5272 0.0032 15 6 1.8720 -9.7640 0.0038 16 6 2.6267 -10.9210 0.0103 17 6 4.0074 -10.8473 0.0050 18 6 4.8282 -12.1111 0.0061 19 7 5.0948 -12.5205 1.3915 20 6 4.6362 -9.6160 0.0038 21 6 3.8861 -8.4559 0.0032 22 1 -0.4851 0.8400 0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8902 25 1 2.8721 -3.6043 0.8906 26 1 2.8722 -3.6043 -0.8893 27 1 0.8536 -5.0451 -0.8885 28 1 0.8541 -5.0446 0.8914 29 1 3.1014 -6.0918 0.8918 30 1 3.1014 -6.0926 -0.8882 31 1 0.7935 -9.8221 0.0037 32 1 2.1378 -11.8840 0.0157 33 1 4.2798 -12.9011 -0.5070 34 1 5.7725 -11.9315 -0.5078 35 1 4.2350 -12.6307 1.9079 36 1 5.6446 -13.3662 1.4193 37 1 5.7149 -9.5610 0.0038 38 1 4.3777 -7.4944 0.0027 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385845167.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:24 Heat of formation + Delta-G solvation = -41.603548 kcal Electronic energy + Delta-G solvation = -16816.025593 eV Core-core repulsion = 14043.511519 eV Total energy + Delta-G solvation = -2772.514074 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.18805 -38.00040 -35.03672 -34.38630 -32.43616 -31.15736 -30.01866 -28.71016 -25.40194 -24.51283 -23.14092 -21.73749 -20.87901 -20.14311 -18.06503 -16.59755 -16.31581 -16.09016 -15.93946 -15.12000 -14.88709 -14.47171 -14.11725 -14.05529 -13.71086 -13.58497 -12.67991 -12.54106 -12.40653 -11.85165 -11.58245 -11.52984 -11.47903 -10.92971 -10.89250 -10.53474 -10.44148 -10.43344 -9.71339 -9.36704 -9.14659 -9.06395 -9.05553 -8.35380 -8.15902 -6.00023 -4.02592 1.23295 1.30672 3.28633 3.31035 3.38526 3.42687 3.60737 4.39964 4.46059 4.60551 4.67154 4.80199 4.99902 5.17392 5.20160 5.26532 5.30224 5.35831 5.46026 5.56817 5.59646 5.90487 5.99664 6.04989 6.16685 6.27176 6.40886 6.44695 6.66682 6.69884 6.74873 6.84946 7.05442 7.07987 7.48855 7.67617 7.81269 8.00052 8.41953 9.04796 9.61536 11.11374 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.060037 B = 0.002809 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.270320 B = 9965.208753 C =10318.309663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.107 4.107 11 C -0.117 4.117 12 C 0.059 3.941 13 O -0.315 6.315 14 C 0.140 3.860 15 C -0.158 4.158 16 C -0.076 4.076 17 C -0.135 4.135 18 C 0.108 3.892 19 N -0.848 5.848 20 C -0.057 4.057 21 C -0.211 4.211 22 H 0.260 0.740 23 H 0.017 0.983 24 H 0.017 0.983 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.130 0.870 32 H 0.122 0.878 33 H 0.033 0.967 34 H 0.077 0.923 35 H 0.342 0.658 36 H 0.341 0.659 37 H 0.123 0.877 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.716 -24.327 -0.040 25.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.155 4.155 12 C -0.015 4.015 13 O -0.228 6.228 14 C 0.094 3.906 15 C -0.176 4.176 16 C -0.095 4.095 17 C -0.136 4.136 18 C -0.022 4.022 19 N -0.378 5.378 20 C -0.075 4.075 21 C -0.230 4.230 22 H 0.070 0.930 23 H 0.035 0.965 24 H 0.036 0.964 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.148 0.852 32 H 0.140 0.860 33 H 0.051 0.949 34 H 0.096 0.904 35 H 0.155 0.845 36 H 0.153 0.847 37 H 0.141 0.859 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 7.752 -23.479 0.013 24.726 hybrid contribution 0.084 0.234 -0.240 0.346 sum 7.836 -23.245 -0.227 24.532 Atomic orbital electron populations 1.69973 1.06061 1.26508 1.50914 1.25040 0.94861 0.99308 0.95357 0.86535 0.80092 0.83788 0.77584 1.19750 1.21008 1.21004 1.21292 0.93065 0.91072 1.50479 0.92631 1.19096 0.93966 0.91129 0.97421 1.21584 0.99261 0.93087 1.00528 1.21698 0.98031 0.92516 1.03215 1.23098 0.96050 0.81295 1.01086 1.86108 1.36113 1.12910 1.87716 1.19136 0.90089 0.86991 0.94401 1.20409 1.00488 0.89637 1.07105 1.20768 0.93031 0.97479 0.98210 1.19592 0.93456 0.94726 1.05835 1.20597 0.98575 0.93280 0.89747 1.58717 1.25001 1.40542 1.13503 1.20781 0.99611 0.91127 0.96021 1.21355 0.92961 0.99881 1.08774 0.93037 0.96469 0.96448 0.93130 0.93137 0.91316 0.91307 0.92130 0.92151 0.85242 0.85979 0.94910 0.90420 0.84534 0.84676 0.85873 0.85186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.52 -14.84 9.11 -34.44 -0.31 -15.16 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.11 -2.17 5.15 -26.73 -0.14 -2.31 16 11 C -0.12 -2.02 5.58 -26.73 -0.15 -2.17 16 12 C 0.06 0.87 4.74 37.16 0.18 1.05 16 13 O -0.32 -4.85 10.14 -19.40 -0.20 -5.05 16 14 C 0.14 1.92 6.69 -39.21 -0.26 1.66 16 15 C -0.16 -1.88 9.99 -39.43 -0.39 -2.27 16 16 C -0.08 -0.76 9.69 -39.61 -0.38 -1.14 16 17 C -0.14 -1.35 5.39 -104.60 -0.56 -1.91 16 18 C 0.11 0.82 6.91 -4.98 -0.03 0.78 16 19 N -0.85 -6.05 9.61 -11.41 -0.11 -6.16 16 20 C -0.06 -0.62 9.69 -39.61 -0.38 -1.00 16 21 C -0.21 -2.61 9.04 -39.43 -0.36 -2.97 16 22 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 23 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.99 8.14 -51.92 -0.42 0.57 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.06 0.84 7.66 -51.93 -0.40 0.44 16 30 H 0.06 0.83 7.66 -51.93 -0.40 0.43 16 31 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 32 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 33 H 0.03 0.21 8.09 -51.93 -0.42 -0.21 16 34 H 0.08 0.56 8.08 -51.93 -0.42 0.14 16 35 H 0.34 2.25 8.99 -39.29 -0.35 1.90 16 36 H 0.34 1.70 9.08 -39.29 -0.36 1.35 16 37 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 38 H 0.13 1.50 6.30 -52.49 -0.33 1.17 16 LS Contribution 321.25 15.07 4.84 4.84 Total: -1.00 -31.36 321.25 -8.81 -40.17 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -6.02 Total: -0.60 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: -3.04 Total: -23.53 kcal Atomic # 7 Polarization: -33.20 SS G_CDS: 0.63 Total: -32.57 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: -0.20 Total: -5.05 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.36 -8.81 -40.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385845167.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.433 kcal (2) G-P(sol) polarization free energy of solvation -31.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds