Wall clock time and date at job start Mon Mar 30 2020 07:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99825 * 2 1 4 4 H 1.48493 * 109.47214 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47124 * 300.00013 * 3 2 1 6 6 H 1.48500 * 109.47114 * 59.99911 * 3 2 1 7 7 C 1.37879 * 120.00449 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00139 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99449 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46844 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47213 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47213 * 180.02562 * 11 10 9 13 13 O 1.42899 * 109.47433 * 179.97438 * 12 11 10 14 14 C 1.35893 * 117.00392 * 179.97438 * 13 12 11 15 15 C 1.38736 * 120.05957 * 180.02562 * 14 13 12 16 16 C 1.38138 * 119.94337 * 180.30421 * 15 14 13 17 17 C 1.38270 * 120.05794 * 359.46080 * 16 15 14 18 18 C 1.50697 * 119.94421 * 180.26220 * 17 16 15 19 19 N 1.46901 * 109.46958 * 270.25447 * 18 17 16 20 20 C 1.38259 * 120.10998 * 0.51383 * 17 16 15 21 21 C 1.38146 * 120.05869 * 359.76954 * 20 17 16 22 22 H 0.96996 * 120.00475 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47549 * 60.00143 * 9 7 2 24 24 H 1.08993 * 109.47387 * 299.99766 * 9 7 2 25 25 H 1.09007 * 109.47084 * 59.99988 * 10 9 7 26 26 H 1.08998 * 109.47684 * 300.00749 * 10 9 7 27 27 H 1.08994 * 109.47469 * 60.00410 * 11 10 9 28 28 H 1.09001 * 109.47551 * 299.99998 * 11 10 9 29 29 H 1.09002 * 109.47184 * 60.00229 * 12 11 10 30 30 H 1.09001 * 109.46987 * 299.99936 * 12 11 10 31 31 H 1.08002 * 120.02291 * 0.02562 * 15 14 13 32 32 H 1.08004 * 119.96766 * 179.69880 * 16 15 14 33 33 H 1.08999 * 109.47575 * 30.25213 * 18 17 16 34 34 H 1.09002 * 109.47295 * 150.25537 * 18 17 16 35 35 H 1.00901 * 111.00366 * 56.04983 * 19 18 17 36 36 H 1.00903 * 111.00164 * 180.02562 * 19 18 17 37 37 H 1.08006 * 119.97187 * 179.74376 * 20 17 16 38 38 H 1.07993 * 120.03340 * 179.97438 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9870 0.0012 12 6 2.4748 -6.1499 0.0018 13 8 1.7604 -7.3875 0.0030 14 6 2.5005 -8.5272 0.0032 15 6 1.8720 -9.7640 0.0038 16 6 2.6267 -10.9210 0.0103 17 6 4.0074 -10.8473 0.0050 18 6 4.8282 -12.1111 0.0061 19 7 5.0948 -12.5205 1.3915 20 6 4.6362 -9.6160 0.0038 21 6 3.8861 -8.4559 0.0032 22 1 -0.4851 0.8400 0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8902 25 1 2.8721 -3.6043 0.8906 26 1 2.8722 -3.6043 -0.8893 27 1 0.8536 -5.0451 -0.8885 28 1 0.8541 -5.0446 0.8914 29 1 3.1014 -6.0918 0.8918 30 1 3.1014 -6.0926 -0.8882 31 1 0.7935 -9.8221 0.0037 32 1 2.1378 -11.8840 0.0157 33 1 4.2798 -12.9011 -0.5070 34 1 5.7725 -11.9315 -0.5078 35 1 4.2350 -12.6307 1.9079 36 1 5.6446 -13.3662 1.4193 37 1 5.7149 -9.5610 0.0038 38 1 4.3777 -7.4944 0.0027 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385845167.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:24 Heat of formation + Delta-G solvation = -61.190639 kcal Electronic energy + Delta-G solvation = -16816.874953 eV Core-core repulsion = 14043.511519 eV Total energy + Delta-G solvation = -2773.363434 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.13714 -38.94783 -36.58299 -35.29618 -34.35983 -32.04693 -31.13916 -30.14425 -27.00184 -25.40425 -24.38255 -23.03018 -21.82267 -21.77322 -19.08758 -18.45057 -17.30911 -17.22685 -16.97948 -16.48010 -15.82035 -15.64670 -15.50951 -14.90160 -14.74723 -14.46091 -14.33962 -13.84898 -13.71337 -13.31358 -13.00142 -12.93656 -12.63113 -12.42041 -12.32198 -12.19282 -11.78041 -11.67212 -11.40095 -11.35873 -11.12978 -10.56878 -9.96223 -9.60742 -9.06806 -8.20787 -6.32213 0.38712 0.43353 1.40177 1.40446 1.53970 2.21039 2.41630 2.76444 3.12437 3.80259 3.83849 3.94965 3.95272 4.00377 4.04959 4.31131 4.33499 4.40682 4.46172 4.51676 4.67577 4.77425 4.78630 4.84887 5.08509 5.09742 5.22068 5.23307 5.31874 5.42317 5.51989 5.64988 5.73218 5.84417 5.85783 6.23247 6.23795 6.46619 6.63214 6.85457 7.37287 8.91490 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.060037 B = 0.002809 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.270320 B = 9965.208753 C =10318.309663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.021 3.979 10 C -0.093 4.093 11 C -0.109 4.109 12 C 0.069 3.931 13 O -0.335 6.335 14 C 0.109 3.891 15 C -0.169 4.169 16 C -0.073 4.073 17 C -0.132 4.132 18 C 0.110 3.890 19 N -0.857 5.857 20 C -0.066 4.066 21 C -0.220 4.220 22 H 0.264 0.736 23 H -0.009 1.009 24 H -0.009 1.009 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.134 0.866 32 H 0.151 0.849 33 H 0.049 0.951 34 H 0.082 0.918 35 H 0.345 0.655 36 H 0.353 0.647 37 H 0.138 0.862 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.591 -25.580 -0.057 27.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.184 1.184 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.581 4.581 8 H 0.081 0.919 9 C -0.016 4.016 10 C -0.131 4.131 11 C -0.147 4.147 12 C -0.006 4.006 13 O -0.249 6.249 14 C 0.064 3.936 15 C -0.187 4.187 16 C -0.091 4.091 17 C -0.133 4.133 18 C -0.020 4.020 19 N -0.389 5.389 20 C -0.084 4.084 21 C -0.239 4.239 22 H 0.072 0.928 23 H 0.010 0.990 24 H 0.010 0.990 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.152 0.848 32 H 0.168 0.832 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.158 0.842 36 H 0.167 0.833 37 H 0.156 0.844 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 9.644 -24.762 -0.002 26.574 hybrid contribution -0.512 0.508 -0.229 0.757 sum 9.132 -24.254 -0.231 25.917 Atomic orbital electron populations 1.70109 1.07889 1.27746 1.51794 1.26037 0.95806 1.03567 0.94771 0.85361 0.79107 0.78589 0.77761 1.18406 1.20380 1.20399 1.21750 0.93669 0.92300 1.50344 0.91898 1.19027 0.94518 0.93150 0.94895 1.21347 0.98082 0.92347 1.01334 1.21486 0.98179 0.92447 1.02572 1.22867 0.94990 0.80551 1.02171 1.86037 1.36880 1.13421 1.88559 1.19418 0.90775 0.86798 0.96639 1.20658 1.01101 0.89769 1.07201 1.21086 0.93141 0.97964 0.96946 1.19956 0.93823 0.95479 1.04012 1.20604 0.98643 0.92484 0.90283 1.58684 1.25460 1.41555 1.13234 1.21044 1.00413 0.91122 0.95859 1.21481 0.92620 1.00738 1.09042 0.92768 0.99030 0.99038 0.92270 0.92218 0.91989 0.92042 0.91111 0.90995 0.84815 0.83181 0.93278 0.89927 0.84216 0.83255 0.84428 0.84869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.81 13.29 21.45 0.28 -57.52 16 2 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 3 Si 0.97 44.59 29.54 68.60 2.03 46.62 16 4 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.54 -31.21 9.11 25.60 0.23 -30.97 16 8 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 9 C 0.02 1.13 4.97 29.85 0.15 1.28 16 10 C -0.09 -3.80 5.15 30.59 0.16 -3.64 16 11 C -0.11 -3.82 5.58 30.59 0.17 -3.65 16 12 C 0.07 2.00 4.74 71.98 0.34 2.34 16 13 O -0.33 -10.32 10.14 -92.34 -0.94 -11.26 16 14 C 0.11 2.94 6.69 22.51 0.15 3.09 16 15 C -0.17 -3.86 9.99 22.37 0.22 -3.64 16 16 C -0.07 -1.30 9.69 22.25 0.22 -1.08 16 17 C -0.13 -2.33 5.39 -19.85 -0.11 -2.44 16 18 C 0.11 1.35 6.91 85.56 0.59 1.94 16 19 N -0.86 -10.01 9.61 -190.01 -1.83 -11.84 16 20 C -0.07 -1.33 9.69 22.25 0.22 -1.11 16 21 C -0.22 -5.26 9.04 22.37 0.20 -5.06 16 22 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 23 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 24 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 25 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 26 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.07 1.89 7.66 -2.39 -0.02 1.87 16 30 H 0.07 1.90 7.66 -2.39 -0.02 1.89 16 31 H 0.13 2.82 8.06 -2.91 -0.02 2.80 16 32 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 33 H 0.05 0.46 8.09 -2.39 -0.02 0.44 16 34 H 0.08 0.95 8.08 -2.39 -0.02 0.93 16 35 H 0.35 3.69 8.99 -89.69 -0.81 2.89 16 36 H 0.35 2.62 9.08 -89.69 -0.81 1.80 16 37 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 38 H 0.13 2.96 6.30 -2.91 -0.02 2.94 16 Total: -1.00 -67.59 321.25 1.98 -65.61 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -0.57 Total: 11.12 kcal Atomic # 6 Polarization: -45.74 SS G_CDS: 3.01 Total: -42.73 kcal Atomic # 7 Polarization: -67.82 SS G_CDS: -1.54 Total: -69.36 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: -0.94 Total: -11.26 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -67.59 1.98 -65.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385845167.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.423 kcal (2) G-P(sol) polarization free energy of solvation -67.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds