Wall clock time and date at job start Mon Mar 30 2020 07:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 119.99865 * 2 1 4 4 H 1.48502 * 109.47111 * 269.99945 * 3 2 1 5 5 H 1.48501 * 109.47385 * 29.99844 * 3 2 1 6 6 H 1.48501 * 109.47315 * 150.00230 * 3 2 1 7 7 C 1.37869 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00315 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00200 * 179.97438 * 7 2 1 10 10 C 1.52992 * 109.47637 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47382 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47261 * 180.02562 * 11 10 9 13 13 N 1.46895 * 109.47299 * 179.97438 * 12 11 10 14 14 C 1.46897 * 111.00059 * 179.97438 * 13 12 11 15 15 C 1.50707 * 109.47055 * 180.02562 * 14 13 12 16 16 C 1.38289 * 119.96926 * 270.02209 * 15 14 13 17 17 C 1.38240 * 120.11036 * 180.02562 * 16 15 14 18 18 C 1.38173 * 120.05812 * 359.67646 * 17 16 15 19 19 C 1.38709 * 119.93675 * 0.57760 * 18 17 16 20 20 O 1.35905 * 120.05346 * 179.72475 * 19 18 17 21 21 C 1.38116 * 119.97322 * 90.00238 * 15 14 13 22 22 H 0.96999 * 119.99998 * 359.97438 * 1 2 3 23 23 H 1.09009 * 109.47049 * 60.00068 * 9 7 2 24 24 H 1.09005 * 109.47266 * 300.00418 * 9 7 2 25 25 H 1.09000 * 109.47124 * 59.99920 * 10 9 7 26 26 H 1.09003 * 109.47391 * 299.99761 * 10 9 7 27 27 H 1.09000 * 109.47288 * 59.99737 * 11 10 9 28 28 H 1.09006 * 109.46873 * 299.99446 * 11 10 9 29 29 H 1.09000 * 109.47186 * 59.99672 * 12 11 10 30 30 H 1.08998 * 109.47454 * 299.99910 * 12 11 10 31 31 H 1.00902 * 111.00454 * 303.95484 * 13 12 11 32 32 H 1.09002 * 109.47307 * 60.00138 * 14 13 12 33 33 H 1.09000 * 109.47236 * 299.99834 * 14 13 12 34 34 H 1.08001 * 119.94341 * 0.02562 * 16 15 14 35 35 H 1.08006 * 119.97312 * 179.97438 * 17 16 15 36 36 H 1.07996 * 120.03009 * 180.29712 * 18 17 16 37 37 H 0.96705 * 113.99576 * 269.72355 * 20 19 18 38 38 H 1.08003 * 120.03068 * 0.02562 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6365 0.0001 11 6 5.5515 -2.6365 0.0001 12 6 6.0616 -4.0790 -0.0004 13 7 7.5305 -4.0790 -0.0010 14 6 8.0569 -5.4504 -0.0009 15 6 9.5635 -5.4101 -0.0008 16 6 10.2541 -5.3913 -1.1988 17 6 11.6360 -5.3549 -1.2022 18 6 12.3306 -5.3306 -0.0079 19 6 11.6403 -5.3547 1.1949 20 8 12.3213 -5.3365 2.3709 21 6 10.2532 -5.3917 1.1957 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6796 0.8895 24 1 3.8745 -0.6808 -0.8905 25 1 3.6578 -3.1505 -0.8896 26 1 3.6586 -3.1502 0.8903 27 1 5.9148 -2.1225 0.8901 28 1 5.9149 -2.1227 -0.8900 29 1 5.6982 -4.5925 -0.8905 30 1 5.6983 -4.5932 0.8894 31 1 7.8919 -3.5527 -0.7823 32 1 7.7071 -5.9739 -0.8906 33 1 7.7078 -5.9735 0.8894 34 1 9.7128 -5.4050 -2.1333 35 1 12.1731 -5.3407 -2.1391 36 1 13.4100 -5.2973 -0.0111 37 1 12.5419 -6.2143 2.7113 38 1 9.7134 -5.4065 2.1310 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385875463.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:50 Heat of formation + Delta-G solvation = -40.589265 kcal Electronic energy + Delta-G solvation = -16741.858743 eV Core-core repulsion = 13969.388651 eV Total energy + Delta-G solvation = -2772.470092 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.05678 -37.55626 -36.38489 -34.33160 -32.47240 -31.29744 -30.08440 -28.63185 -25.75434 -23.68927 -22.87549 -21.61245 -21.21226 -19.98637 -18.30183 -16.78211 -16.60272 -16.34037 -15.65626 -15.34226 -14.85632 -14.54620 -14.15771 -13.97404 -13.66871 -12.93006 -12.66056 -12.51994 -12.47207 -11.94294 -11.85390 -11.68356 -11.65494 -11.11487 -10.75287 -10.72340 -10.55213 -9.85624 -9.65402 -9.50602 -9.16619 -9.10297 -8.91730 -8.50174 -8.45360 -6.00784 -3.98335 0.93515 1.04586 3.30165 3.33919 3.41190 3.46355 3.86396 4.27171 4.49159 4.54312 4.61006 4.83580 5.02404 5.02836 5.26534 5.30729 5.33923 5.41725 5.46118 5.63288 5.70649 5.81675 6.03903 6.09560 6.11815 6.12979 6.28792 6.38969 6.51496 6.68239 6.78622 6.88881 7.06304 7.31294 7.35090 7.37320 7.50380 7.84552 8.58469 9.04423 9.62350 11.12853 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.040912 B = 0.002889 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.232682 B = 9689.584306 C = 9840.767514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.070 0.930 9 C -0.014 4.014 10 C -0.101 4.101 11 C -0.119 4.119 12 C 0.059 3.941 13 N -0.687 5.687 14 C 0.095 3.905 15 C -0.063 4.063 16 C -0.123 4.123 17 C -0.105 4.105 18 C -0.148 4.148 19 C 0.101 3.899 20 O -0.499 6.499 21 C -0.122 4.122 22 H 0.262 0.738 23 H 0.015 0.985 24 H 0.010 0.990 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.029 0.971 30 H 0.072 0.928 31 H 0.341 0.659 32 H 0.040 0.960 33 H 0.081 0.919 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.389 0.611 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.998 -14.186 -0.756 28.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.137 4.137 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.558 4.558 8 H 0.089 0.911 9 C -0.052 4.052 10 C -0.139 4.139 11 C -0.157 4.157 12 C -0.070 4.070 13 N -0.317 5.317 14 C -0.033 4.033 15 C -0.064 4.064 16 C -0.142 4.142 17 C -0.123 4.123 18 C -0.167 4.167 19 C 0.057 3.943 20 O -0.309 6.309 21 C -0.141 4.141 22 H 0.072 0.928 23 H 0.034 0.966 24 H 0.028 0.972 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.047 0.953 30 H 0.090 0.910 31 H 0.159 0.841 32 H 0.058 0.942 33 H 0.099 0.901 34 H 0.141 0.859 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.244 0.756 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 24.818 -13.394 -0.121 28.202 hybrid contribution 0.232 0.185 -0.868 0.917 sum 25.050 -13.209 -0.989 28.337 Atomic orbital electron populations 1.69921 1.06320 1.26827 1.51465 1.25050 0.94743 0.99235 0.94633 0.86756 0.80414 0.83542 0.78458 1.20367 1.21439 1.18933 1.21192 0.89707 0.94394 1.50479 0.91137 1.19573 0.96935 0.92492 0.96169 1.21414 0.91745 0.99809 1.00938 1.21677 0.97515 0.94464 1.02007 1.22087 0.85763 0.98656 1.00451 1.60537 1.08548 1.12368 1.50290 1.20905 0.89732 0.91155 1.01534 1.19732 0.95481 0.98531 0.92618 1.21116 0.94335 1.01038 0.97704 1.20999 0.94131 0.99466 0.97684 1.21418 1.00440 1.02768 0.92060 1.18489 0.89991 1.00583 0.85221 1.84851 1.76029 1.33665 1.36398 1.21333 0.93204 1.00866 0.98730 0.92809 0.96620 0.97214 0.93058 0.92791 0.91585 0.92733 0.95287 0.90995 0.84125 0.94197 0.90057 0.85912 0.85612 0.85601 0.75561 0.85187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.50 13.96 55.43 0.77 -27.73 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 22.26 27.47 -169.99 -4.67 17.59 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 6 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 7 C -0.52 -15.20 9.66 -34.44 -0.33 -15.53 16 8 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 9 C -0.01 -0.35 4.04 -27.89 -0.11 -0.46 16 10 C -0.10 -2.01 5.15 -26.73 -0.14 -2.15 16 11 C -0.12 -1.92 5.47 -26.73 -0.15 -2.07 16 12 C 0.06 0.79 5.69 -3.83 -0.02 0.77 16 13 N -0.69 -8.30 6.49 -115.06 -0.75 -9.05 16 14 C 0.10 0.96 5.81 -4.97 -0.03 0.93 16 15 C -0.06 -0.62 5.39 -104.64 -0.56 -1.19 16 16 C -0.12 -1.09 9.70 -39.56 -0.38 -1.47 16 17 C -0.10 -0.85 10.04 -39.60 -0.40 -1.25 16 18 C -0.15 -1.28 9.99 -39.43 -0.39 -1.68 16 19 C 0.10 0.98 6.70 -39.22 -0.26 0.72 16 20 O -0.50 -4.37 13.50 -19.44 -0.26 -4.64 16 21 C -0.12 -1.25 9.64 -39.43 -0.38 -1.63 16 22 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 23 H 0.02 0.38 7.20 -51.92 -0.37 0.01 16 24 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.34 3.93 8.72 -39.29 -0.34 3.59 16 32 H 0.04 0.37 8.09 -51.93 -0.42 -0.05 16 33 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 34 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 36 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.39 1.40 9.06 45.56 0.41 1.82 16 38 H 0.13 1.29 8.06 -52.48 -0.42 0.86 16 LS Contribution 321.04 15.07 4.84 4.84 Total: -1.00 -33.14 321.04 -8.68 -41.81 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -5.35 Total: 0.36 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: -3.26 Total: -23.19 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.03 Total: -36.77 kcal Atomic # 8 Polarization: -4.37 SS G_CDS: -0.26 Total: -4.64 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.67 Total: 17.59 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.14 -8.68 -41.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385875463.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.225 kcal (2) G-P(sol) polarization free energy of solvation -33.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds