Wall clock time and date at job start Mon Mar 30 2020 07:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 119.99865 * 2 1 4 4 H 1.48502 * 109.47111 * 269.99945 * 3 2 1 5 5 H 1.48501 * 109.47385 * 29.99844 * 3 2 1 6 6 H 1.48501 * 109.47315 * 150.00230 * 3 2 1 7 7 C 1.37869 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00315 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00200 * 179.97438 * 7 2 1 10 10 C 1.52992 * 109.47637 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47382 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47261 * 180.02562 * 11 10 9 13 13 N 1.46895 * 109.47299 * 179.97438 * 12 11 10 14 14 C 1.46897 * 111.00059 * 179.97438 * 13 12 11 15 15 C 1.50707 * 109.47055 * 180.02562 * 14 13 12 16 16 C 1.38289 * 119.96926 * 270.02209 * 15 14 13 17 17 C 1.38240 * 120.11036 * 180.02562 * 16 15 14 18 18 C 1.38173 * 120.05812 * 359.67646 * 17 16 15 19 19 C 1.38709 * 119.93675 * 0.57760 * 18 17 16 20 20 O 1.35905 * 120.05346 * 179.72475 * 19 18 17 21 21 C 1.38116 * 119.97322 * 90.00238 * 15 14 13 22 22 H 0.96999 * 119.99998 * 359.97438 * 1 2 3 23 23 H 1.09009 * 109.47049 * 60.00068 * 9 7 2 24 24 H 1.09005 * 109.47266 * 300.00418 * 9 7 2 25 25 H 1.09000 * 109.47124 * 59.99920 * 10 9 7 26 26 H 1.09003 * 109.47391 * 299.99761 * 10 9 7 27 27 H 1.09000 * 109.47288 * 59.99737 * 11 10 9 28 28 H 1.09006 * 109.46873 * 299.99446 * 11 10 9 29 29 H 1.09000 * 109.47186 * 59.99672 * 12 11 10 30 30 H 1.08998 * 109.47454 * 299.99910 * 12 11 10 31 31 H 1.00902 * 111.00454 * 303.95484 * 13 12 11 32 32 H 1.09002 * 109.47307 * 60.00138 * 14 13 12 33 33 H 1.09000 * 109.47236 * 299.99834 * 14 13 12 34 34 H 1.08001 * 119.94341 * 0.02562 * 16 15 14 35 35 H 1.08006 * 119.97312 * 179.97438 * 17 16 15 36 36 H 1.07996 * 120.03009 * 180.29712 * 18 17 16 37 37 H 0.96705 * 113.99576 * 269.72355 * 20 19 18 38 38 H 1.08003 * 120.03068 * 0.02562 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6365 0.0001 11 6 5.5515 -2.6365 0.0001 12 6 6.0616 -4.0790 -0.0004 13 7 7.5305 -4.0790 -0.0010 14 6 8.0569 -5.4504 -0.0009 15 6 9.5635 -5.4101 -0.0008 16 6 10.2541 -5.3913 -1.1988 17 6 11.6360 -5.3549 -1.2022 18 6 12.3306 -5.3306 -0.0079 19 6 11.6403 -5.3547 1.1949 20 8 12.3213 -5.3365 2.3709 21 6 10.2532 -5.3917 1.1957 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6796 0.8895 24 1 3.8745 -0.6808 -0.8905 25 1 3.6578 -3.1505 -0.8896 26 1 3.6586 -3.1502 0.8903 27 1 5.9148 -2.1225 0.8901 28 1 5.9149 -2.1227 -0.8900 29 1 5.6982 -4.5925 -0.8905 30 1 5.6983 -4.5932 0.8894 31 1 7.8919 -3.5527 -0.7823 32 1 7.7071 -5.9739 -0.8906 33 1 7.7078 -5.9735 0.8894 34 1 9.7128 -5.4050 -2.1333 35 1 12.1731 -5.3407 -2.1391 36 1 13.4100 -5.2973 -0.0111 37 1 12.5419 -6.2143 2.7113 38 1 9.7134 -5.4065 2.1310 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385875463.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:50 Heat of formation + Delta-G solvation = -63.805012 kcal Electronic energy + Delta-G solvation = -16742.865453 eV Core-core repulsion = 13969.388651 eV Total energy + Delta-G solvation = -2773.476802 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.71342 -38.36518 -37.37648 -35.87045 -34.26604 -32.43604 -30.84527 -30.05285 -27.01307 -25.06350 -23.52794 -22.68619 -22.31662 -21.64560 -19.01336 -18.80848 -17.45096 -17.13577 -16.49078 -16.38619 -16.14804 -15.79131 -15.58459 -14.80467 -14.77019 -14.58165 -13.84735 -13.77601 -13.52951 -13.27393 -13.00554 -12.87008 -12.57722 -12.46765 -12.26993 -12.07554 -11.74707 -11.47097 -11.36276 -11.30059 -11.16258 -10.76349 -9.84349 -9.59921 -9.34366 -8.29826 -6.33842 0.27965 0.38103 1.35600 1.37941 1.50569 2.36523 2.64221 3.05563 3.22863 3.41110 3.83404 3.96099 4.10655 4.18581 4.23192 4.37771 4.40058 4.50550 4.59764 4.65986 4.71087 4.77589 4.91296 4.99439 5.06213 5.14299 5.19861 5.26611 5.46010 5.47363 5.57886 5.61420 5.65777 5.68655 5.90656 6.03945 6.29284 6.42633 6.74515 6.86762 7.31077 8.87177 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.040912 B = 0.002889 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.232682 B = 9689.584306 C = 9840.767514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.001 3.999 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.248 1.248 7 C -0.535 4.535 8 H 0.030 0.970 9 C -0.013 4.013 10 C -0.095 4.095 11 C -0.107 4.107 12 C 0.068 3.932 13 N -0.693 5.693 14 C 0.099 3.901 15 C -0.073 4.073 16 C -0.129 4.129 17 C -0.104 4.104 18 C -0.154 4.154 19 C 0.092 3.908 20 O -0.513 6.513 21 C -0.141 4.141 22 H 0.266 0.734 23 H 0.017 0.983 24 H 0.018 0.982 25 H 0.048 0.952 26 H 0.047 0.953 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.036 0.964 30 H 0.070 0.930 31 H 0.345 0.655 32 H 0.051 0.949 33 H 0.080 0.920 34 H 0.138 0.862 35 H 0.151 0.849 36 H 0.142 0.858 37 H 0.409 0.591 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.566 -13.813 -1.475 30.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.196 4.196 3 Si 0.777 3.223 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.171 1.171 7 C -0.573 4.573 8 H 0.049 0.951 9 C -0.051 4.051 10 C -0.133 4.133 11 C -0.145 4.145 12 C -0.061 4.061 13 N -0.325 5.325 14 C -0.030 4.030 15 C -0.073 4.073 16 C -0.148 4.148 17 C -0.122 4.122 18 C -0.173 4.173 19 C 0.048 3.952 20 O -0.327 6.327 21 C -0.160 4.160 22 H 0.075 0.925 23 H 0.035 0.965 24 H 0.036 0.964 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.054 0.946 30 H 0.088 0.912 31 H 0.163 0.837 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.156 0.844 35 H 0.168 0.832 36 H 0.159 0.841 37 H 0.268 0.732 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 27.409 -13.056 -0.834 30.371 hybrid contribution -0.588 -0.030 -0.626 0.860 sum 26.821 -13.086 -1.461 29.878 Atomic orbital electron populations 1.70076 1.08333 1.28176 1.52836 1.26074 0.95672 1.03707 0.94129 0.85604 0.79425 0.78023 0.79270 1.18997 1.20923 1.17121 1.21575 0.92417 0.93064 1.50222 0.95120 1.19550 0.93623 0.95535 0.96350 1.21287 0.94603 0.96829 1.00567 1.21498 0.94366 0.96523 1.02148 1.21882 0.86793 0.96629 1.00758 1.60473 1.07498 1.13794 1.50716 1.20894 0.90011 0.90056 1.02006 1.19755 0.95266 0.99269 0.93020 1.21344 0.94870 1.00687 0.97862 1.21321 0.94046 0.98269 0.98547 1.21670 1.01375 1.02374 0.91880 1.18640 0.89981 1.00695 0.85893 1.84789 1.75886 1.35664 1.36324 1.21410 0.93726 1.02032 0.98794 0.92501 0.96477 0.96387 0.93284 0.93462 0.92077 0.91907 0.94590 0.91183 0.83666 0.93067 0.90182 0.84433 0.83176 0.84061 0.73231 0.85773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.17 13.96 21.44 0.30 -60.87 16 2 C 0.00 0.03 5.47 84.65 0.46 0.49 16 3 Si 0.95 45.39 27.47 68.60 1.88 47.27 16 4 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 6 H -0.25 -11.02 6.54 99.48 0.65 -10.37 16 7 C -0.53 -31.82 9.66 25.60 0.25 -31.57 16 8 H 0.03 2.00 7.99 -2.91 -0.02 1.97 16 9 C -0.01 -0.63 4.04 29.85 0.12 -0.51 16 10 C -0.09 -3.71 5.15 30.59 0.16 -3.55 16 11 C -0.11 -3.28 5.47 30.60 0.17 -3.12 16 12 C 0.07 1.71 5.69 86.30 0.49 2.20 16 13 N -0.69 -15.50 6.49 -517.93 -3.36 -18.86 16 14 C 0.10 1.83 5.81 85.56 0.50 2.33 16 15 C -0.07 -1.33 5.39 -19.88 -0.11 -1.44 16 16 C -0.13 -2.00 9.70 22.28 0.22 -1.78 16 17 C -0.10 -1.43 10.04 22.25 0.22 -1.21 16 18 C -0.15 -2.38 9.99 22.37 0.22 -2.15 16 19 C 0.09 1.68 6.70 22.51 0.15 1.83 16 20 O -0.51 -8.46 13.50 -92.48 -1.25 -9.71 16 21 C -0.14 -2.76 9.64 22.36 0.22 -2.55 16 22 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 23 H 0.02 0.81 7.20 -2.38 -0.02 0.79 16 24 H 0.02 0.83 7.57 -2.38 -0.02 0.81 16 25 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 29 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 1.78 8.14 -2.39 -0.02 1.77 16 31 H 0.35 7.20 8.72 -89.69 -0.78 6.42 16 32 H 0.05 0.84 8.09 -2.39 -0.02 0.82 16 33 H 0.08 1.49 8.08 -2.39 -0.02 1.47 16 34 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 35 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 36 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 37 H 0.41 2.51 9.06 -74.05 -0.67 1.84 16 38 H 0.12 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -71.28 321.04 0.17 -71.10 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -0.47 Total: 12.08 kcal Atomic # 6 Polarization: -44.09 SS G_CDS: 3.07 Total: -41.02 kcal Atomic # 7 Polarization: -76.67 SS G_CDS: -3.06 Total: -79.73 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -1.25 Total: -9.71 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.88 Total: 47.27 kcal Total: -71.28 0.17 -71.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385875463.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.299 kcal (2) G-P(sol) polarization free energy of solvation -71.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds