Wall clock time and date at job start Mon Mar 30 2020 06:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47757 * 2 1 4 4 C 1.50707 * 109.47160 * 239.99900 * 2 1 3 5 5 H 1.07998 * 119.99943 * 240.00798 * 4 2 1 6 6 C 1.37877 * 119.99375 * 59.99771 * 4 2 1 7 7 N 1.31511 * 120.00503 * 359.97438 * 6 4 2 8 8 Si 1.86808 * 119.99507 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47331 * 60.00259 * 8 6 4 10 10 H 1.48500 * 109.46953 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47024 * 299.99802 * 8 6 4 12 12 N 1.46903 * 109.47220 * 120.00400 * 2 1 3 13 13 C 1.46905 * 110.99825 * 274.99599 * 12 2 1 14 14 C 1.50693 * 109.47200 * 180.02562 * 13 12 2 15 15 C 1.32582 * 120.00317 * 126.83097 * 14 13 12 16 16 C 1.47804 * 119.99596 * 8.75802 * 15 14 13 17 17 C 1.39544 * 120.11380 * 220.40905 * 16 15 14 18 18 C 1.37929 * 119.87864 * 179.74568 * 17 16 15 19 19 C 1.38579 * 120.11615 * 0.53278 * 18 17 16 20 20 F 1.35098 * 119.88237 * 179.74262 * 19 18 17 21 21 C 1.38572 * 120.23443 * 359.71870 * 19 18 17 22 22 C 1.37927 * 120.11402 * 0.02562 * 21 19 18 23 23 H 1.09003 * 109.47348 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46790 * 299.99716 * 1 2 3 25 25 H 1.08991 * 109.47102 * 59.99691 * 1 2 3 26 26 H 0.97000 * 120.00409 * 179.97438 * 7 6 4 27 27 H 1.00898 * 111.00203 * 151.04537 * 12 2 1 28 28 H 1.08992 * 109.46887 * 60.00103 * 13 12 2 29 29 H 1.09007 * 109.46926 * 299.99953 * 13 12 2 30 30 H 1.07998 * 120.00223 * 307.10451 * 14 13 12 31 31 H 1.07997 * 120.00104 * 188.76121 * 15 14 13 32 32 H 1.07992 * 120.06138 * 359.97438 * 17 16 15 33 33 H 1.08001 * 119.94594 * 180.25498 * 18 17 16 34 34 H 1.07993 * 119.94309 * 180.02562 * 21 19 18 35 35 H 1.08003 * 120.05892 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9426 0.8296 -2.6034 8 14 2.3212 -1.1204 -4.0080 9 1 1.8257 -2.5202 -4.0078 10 1 1.8268 -0.4199 -5.2205 11 1 3.8062 -1.1209 -4.0083 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2225 2.3469 14 6 2.5886 -0.5216 3.5557 15 6 3.6238 -0.0518 4.2380 16 6 4.1593 1.2923 3.9359 17 6 5.5376 1.5098 3.9220 18 6 6.0322 2.7648 3.6343 19 6 5.1628 3.8112 3.3704 20 9 5.6523 5.0397 3.0943 21 6 3.7931 3.6017 3.3881 22 6 3.2882 2.3494 3.6694 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 0.7085 1.1612 -3.4843 27 1 2.9173 -1.1206 1.0287 28 1 1.0872 0.6162 2.5525 29 1 2.7590 1.0461 2.1182 30 1 2.1109 -1.4399 3.8636 31 1 4.0756 -0.6513 5.0144 32 1 6.2159 0.6962 4.1323 33 1 7.0989 2.9335 3.6192 34 1 3.1199 4.4204 3.1814 35 1 2.2205 2.1872 3.6834 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389960958.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:54 Heat of formation + Delta-G solvation = -6.392638 kcal Electronic energy + Delta-G solvation = -17367.117019 eV Core-core repulsion = 14472.669500 eV Total energy + Delta-G solvation = -2894.447520 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.85965 -39.27422 -36.33794 -34.22093 -32.13431 -31.20121 -29.55136 -27.96691 -25.42104 -24.43386 -22.85620 -22.21405 -19.77425 -19.11792 -17.55725 -16.66082 -16.28399 -15.57864 -15.45623 -15.01276 -14.79830 -14.07384 -13.79945 -13.60961 -13.20230 -13.08497 -12.89546 -12.37017 -12.00487 -11.81941 -11.33049 -11.03881 -11.00032 -10.78192 -10.74483 -10.27125 -10.13934 -9.93501 -9.51726 -9.09770 -8.84087 -8.47404 -8.09467 -7.24995 -6.02943 -4.09513 0.93157 1.25176 2.39584 3.31101 3.35435 3.38158 3.67341 4.27659 4.40173 4.72873 4.80877 4.86450 5.12839 5.25420 5.28324 5.40267 5.51834 5.72651 5.87876 6.01212 6.11160 6.12254 6.18037 6.27828 6.45118 6.68728 6.81197 6.88304 6.95714 7.12319 7.22545 7.49014 7.77262 7.88933 8.26226 8.36978 8.65455 9.00456 9.56397 11.03422 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.020898 B = 0.005298 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.545433 B = 5283.713803 C = 5852.732031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.212 3.788 3 H 0.001 0.999 4 C -0.519 4.519 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.278 1.278 12 N -0.686 5.686 13 C 0.069 3.931 14 C -0.107 4.107 15 C -0.151 4.151 16 C -0.055 4.055 17 C -0.086 4.086 18 C -0.156 4.156 19 C 0.091 3.909 20 F -0.144 7.144 21 C -0.153 4.153 22 C -0.076 4.076 23 H 0.031 0.969 24 H 0.003 0.997 25 H 0.081 0.919 26 H 0.262 0.738 27 H 0.331 0.669 28 H 0.072 0.928 29 H 0.039 0.961 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.591 2.774 13.915 15.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.105 3.895 3 H 0.018 0.982 4 C -0.558 4.558 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.317 5.317 13 C -0.060 4.060 14 C -0.125 4.125 15 C -0.170 4.170 16 C -0.055 4.055 17 C -0.104 4.104 18 C -0.174 4.174 19 C 0.072 3.928 20 F -0.122 7.122 21 C -0.171 4.171 22 C -0.094 4.094 23 H 0.051 0.949 24 H 0.022 0.978 25 H 0.099 0.901 26 H 0.072 0.928 27 H 0.148 0.852 28 H 0.090 0.910 29 H 0.057 0.943 30 H 0.138 0.862 31 H 0.138 0.862 32 H 0.150 0.850 33 H 0.151 0.849 34 H 0.153 0.847 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.885 2.709 13.903 15.338 hybrid contribution 1.145 0.307 -1.204 1.690 sum 7.030 3.016 12.698 14.824 Atomic orbital electron populations 1.21720 0.97879 0.99353 0.99323 1.19104 0.92572 0.92356 0.85494 0.98168 1.21218 1.31556 1.12538 0.90455 0.92282 1.24915 0.95027 0.94991 0.99032 1.69881 1.36547 1.22868 1.23594 0.86583 0.79084 0.79796 0.82076 1.20153 1.21269 1.20341 1.60703 1.32102 1.33061 1.05791 1.21409 0.99932 0.94478 0.90175 1.23561 0.94628 0.99695 0.94645 1.21540 0.98473 0.94281 1.02670 1.19137 0.92923 0.94020 0.99451 1.21094 0.94697 0.96069 0.98503 1.21029 0.99942 0.92664 1.03804 1.17786 0.92387 0.80324 1.02344 1.91480 1.88493 1.40905 1.91355 1.21094 0.93516 0.98930 1.03608 1.21311 1.00389 0.91084 0.96614 0.94939 0.97774 0.90072 0.92849 0.85172 0.91012 0.94289 0.86188 0.86166 0.85019 0.84950 0.84693 0.84606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.10 9.19 37.16 0.34 -2.76 16 2 C 0.21 5.40 2.60 -68.86 -0.18 5.22 16 3 H 0.00 0.02 7.80 -51.93 -0.40 -0.39 16 4 C -0.52 -14.34 8.59 -34.44 -0.30 -14.64 16 5 H 0.06 1.60 7.62 -52.49 -0.40 1.20 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.59 11.32 55.43 0.63 -24.96 16 8 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.69 -14.59 6.29 -109.22 -0.69 -15.28 16 13 C 0.07 1.21 4.32 -4.98 -0.02 1.19 16 14 C -0.11 -1.49 9.70 -36.22 -0.35 -1.85 16 15 C -0.15 -1.86 9.77 -37.58 -0.37 -2.23 16 16 C -0.06 -0.72 5.05 -105.01 -0.53 -1.25 16 17 C -0.09 -1.02 9.78 -39.21 -0.38 -1.40 16 18 C -0.16 -1.89 10.01 -39.57 -0.40 -2.29 16 19 C 0.09 1.23 7.30 -39.33 -0.29 0.94 16 20 F -0.14 -2.01 17.26 2.25 0.04 -1.98 16 21 C -0.15 -2.04 10.01 -39.57 -0.40 -2.43 16 22 C -0.08 -1.02 7.36 -39.21 -0.29 -1.31 16 23 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.00 0.07 7.45 -51.93 -0.39 -0.31 16 25 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 26 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16 27 H 0.33 6.99 8.22 -39.29 -0.32 6.67 16 28 H 0.07 1.27 7.35 -51.93 -0.38 0.89 16 29 H 0.04 0.72 4.90 -51.93 -0.25 0.46 16 30 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 31 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 32 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 34 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 35 H 0.14 1.74 6.66 -52.48 -0.35 1.39 16 LS Contribution 297.52 15.07 4.48 4.48 Total: -1.00 -29.07 297.52 -8.30 -37.36 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -4.49 Total: 5.18 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: -3.25 Total: -21.17 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: -0.06 Total: -40.24 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.07 -8.30 -37.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389960958.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.971 kcal (2) G-P(sol) polarization free energy of solvation -29.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds