Wall clock time and date at job start Mon Mar 30 2020 06:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47757 * 2 1 4 4 C 1.50707 * 109.47160 * 239.99900 * 2 1 3 5 5 H 1.07998 * 119.99943 * 240.00798 * 4 2 1 6 6 C 1.37877 * 119.99375 * 59.99771 * 4 2 1 7 7 N 1.31511 * 120.00503 * 359.97438 * 6 4 2 8 8 Si 1.86808 * 119.99507 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47331 * 60.00259 * 8 6 4 10 10 H 1.48500 * 109.46953 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47024 * 299.99802 * 8 6 4 12 12 N 1.46903 * 109.47220 * 120.00400 * 2 1 3 13 13 C 1.46905 * 110.99825 * 274.99599 * 12 2 1 14 14 C 1.50693 * 109.47200 * 180.02562 * 13 12 2 15 15 C 1.32582 * 120.00317 * 126.83097 * 14 13 12 16 16 C 1.47804 * 119.99596 * 8.75802 * 15 14 13 17 17 C 1.39544 * 120.11380 * 220.40905 * 16 15 14 18 18 C 1.37929 * 119.87864 * 179.74568 * 17 16 15 19 19 C 1.38579 * 120.11615 * 0.53278 * 18 17 16 20 20 F 1.35098 * 119.88237 * 179.74262 * 19 18 17 21 21 C 1.38572 * 120.23443 * 359.71870 * 19 18 17 22 22 C 1.37927 * 120.11402 * 0.02562 * 21 19 18 23 23 H 1.09003 * 109.47348 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46790 * 299.99716 * 1 2 3 25 25 H 1.08991 * 109.47102 * 59.99691 * 1 2 3 26 26 H 0.97000 * 120.00409 * 179.97438 * 7 6 4 27 27 H 1.00898 * 111.00203 * 151.04537 * 12 2 1 28 28 H 1.08992 * 109.46887 * 60.00103 * 13 12 2 29 29 H 1.09007 * 109.46926 * 299.99953 * 13 12 2 30 30 H 1.07998 * 120.00223 * 307.10451 * 14 13 12 31 31 H 1.07997 * 120.00104 * 188.76121 * 15 14 13 32 32 H 1.07992 * 120.06138 * 359.97438 * 17 16 15 33 33 H 1.08001 * 119.94594 * 180.25498 * 18 17 16 34 34 H 1.07993 * 119.94309 * 180.02562 * 21 19 18 35 35 H 1.08003 * 120.05892 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9426 0.8296 -2.6034 8 14 2.3212 -1.1204 -4.0080 9 1 1.8257 -2.5202 -4.0078 10 1 1.8268 -0.4199 -5.2205 11 1 3.8062 -1.1209 -4.0083 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2225 2.3469 14 6 2.5886 -0.5216 3.5557 15 6 3.6238 -0.0518 4.2380 16 6 4.1593 1.2923 3.9359 17 6 5.5376 1.5098 3.9220 18 6 6.0322 2.7648 3.6343 19 6 5.1628 3.8112 3.3704 20 9 5.6523 5.0397 3.0943 21 6 3.7931 3.6017 3.3881 22 6 3.2882 2.3494 3.6694 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 0.7085 1.1612 -3.4843 27 1 2.9173 -1.1206 1.0287 28 1 1.0872 0.6162 2.5525 29 1 2.7590 1.0461 2.1182 30 1 2.1109 -1.4399 3.8636 31 1 4.0756 -0.6513 5.0144 32 1 6.2159 0.6962 4.1323 33 1 7.0989 2.9335 3.6192 34 1 3.1199 4.4204 3.1814 35 1 2.2205 2.1872 3.6834 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389960958.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:54 Heat of formation + Delta-G solvation = -22.720662 kcal Electronic energy + Delta-G solvation = -17367.825056 eV Core-core repulsion = 14472.669500 eV Total energy + Delta-G solvation = -2895.155556 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.92787 -40.29758 -37.94113 -35.71666 -33.93161 -32.20084 -30.98876 -29.44056 -27.41369 -25.95075 -23.87076 -23.36274 -21.71317 -20.21995 -18.73037 -18.39253 -17.42801 -16.99130 -16.64874 -16.47030 -16.20897 -15.61890 -15.17580 -14.75770 -14.56866 -14.33756 -14.19978 -13.80587 -13.53962 -13.17457 -13.03945 -12.75308 -12.58966 -12.46588 -12.19762 -12.02518 -11.94856 -11.63408 -10.94953 -10.59024 -10.55094 -10.09342 -9.21723 -8.93179 -8.13998 -6.28483 -0.10201 0.27059 1.35303 1.42141 1.43846 1.51544 2.41117 2.67107 3.14617 3.27065 3.69441 3.77713 3.85830 3.92300 4.21024 4.28329 4.39192 4.53939 4.68460 4.84857 4.89706 4.97209 5.06673 5.08064 5.13720 5.18588 5.21505 5.39054 5.47845 5.62444 5.66655 5.79105 5.87668 5.96684 6.21912 6.46016 6.77107 6.99588 7.42058 8.91524 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.020898 B = 0.005298 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.545433 B = 5283.713803 C = 5852.732031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.216 3.784 3 H -0.034 1.034 4 C -0.539 4.539 5 H 0.060 0.940 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.962 3.038 9 H -0.269 1.269 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.683 5.683 13 C 0.073 3.927 14 C -0.125 4.125 15 C -0.122 4.122 16 C -0.072 4.072 17 C -0.082 4.082 18 C -0.156 4.156 19 C 0.072 3.928 20 F -0.150 7.150 21 C -0.166 4.166 22 C -0.089 4.089 23 H 0.029 0.971 24 H 0.022 0.978 25 H 0.056 0.944 26 H 0.263 0.737 27 H 0.332 0.668 28 H 0.064 0.936 29 H 0.030 0.970 30 H 0.134 0.866 31 H 0.155 0.845 32 H 0.162 0.838 33 H 0.156 0.844 34 H 0.140 0.860 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.974 1.475 14.739 16.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.108 3.892 3 H -0.017 1.017 4 C -0.577 4.577 5 H 0.078 0.922 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.787 3.213 9 H -0.194 1.194 10 H -0.209 1.209 11 H -0.196 1.196 12 N -0.313 5.313 13 C -0.055 4.055 14 C -0.143 4.143 15 C -0.141 4.141 16 C -0.073 4.073 17 C -0.100 4.100 18 C -0.174 4.174 19 C 0.053 3.947 20 F -0.129 7.129 21 C -0.185 4.185 22 C -0.107 4.107 23 H 0.048 0.952 24 H 0.041 0.959 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.149 0.851 28 H 0.083 0.917 29 H 0.048 0.952 30 H 0.152 0.848 31 H 0.172 0.828 32 H 0.180 0.820 33 H 0.174 0.826 34 H 0.158 0.842 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.271 1.405 14.749 16.504 hybrid contribution 0.754 0.786 -1.386 1.762 sum 8.025 2.191 13.364 15.742 Atomic orbital electron populations 1.21542 0.97679 0.98930 0.99022 1.18900 0.92743 0.90634 0.86953 1.01654 1.21570 1.31783 1.12753 0.91630 0.92198 1.25748 0.95152 0.95674 1.02098 1.70016 1.37422 1.24092 1.24248 0.85548 0.78697 0.78764 0.78252 1.19414 1.20929 1.19646 1.60612 1.32140 1.33379 1.05184 1.21375 0.99723 0.94080 0.90357 1.23322 0.96201 1.00551 0.94257 1.21820 0.96745 0.93543 1.01984 1.19412 0.93689 0.94331 0.99834 1.21441 0.94560 0.96741 0.97218 1.21350 1.01025 0.92299 1.02748 1.18059 0.92801 0.80634 1.03173 1.91460 1.88527 1.41374 1.91523 1.21256 0.93947 0.99356 1.03955 1.21417 1.00642 0.91507 0.97094 0.95199 0.95899 0.92530 0.92829 0.85082 0.91732 0.95182 0.84846 0.82795 0.82039 0.82630 0.84168 0.84731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.73 9.19 71.98 0.66 -5.07 16 2 C 0.22 11.19 2.60 44.17 0.11 11.31 16 3 H -0.03 -1.97 7.80 -2.39 -0.02 -1.98 16 4 C -0.54 -29.95 8.59 25.60 0.22 -29.73 16 5 H 0.06 3.24 7.62 -2.91 -0.02 3.22 16 6 C 0.01 0.70 5.30 84.66 0.45 1.15 16 7 N -0.92 -53.59 11.32 21.45 0.24 -53.35 16 8 Si 0.96 43.71 29.54 68.60 2.03 45.74 16 9 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 12 N -0.68 -28.94 6.29 -499.46 -3.14 -32.09 16 13 C 0.07 2.54 4.32 85.55 0.37 2.91 16 14 C -0.13 -3.25 9.70 24.53 0.24 -3.01 16 15 C -0.12 -2.65 9.77 23.65 0.23 -2.42 16 16 C -0.07 -1.76 5.05 -20.12 -0.10 -1.86 16 17 C -0.08 -1.72 9.78 22.51 0.22 -1.50 16 18 C -0.16 -3.48 10.01 22.28 0.22 -3.25 16 19 C 0.07 1.92 7.30 22.43 0.16 2.09 16 20 F -0.15 -4.17 17.26 44.97 0.78 -3.39 16 21 C -0.17 -4.47 10.01 22.28 0.22 -4.24 16 22 C -0.09 -2.35 7.36 22.51 0.17 -2.19 16 23 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.02 1.01 7.45 -2.38 -0.02 1.00 16 25 H 0.06 3.13 6.07 -2.39 -0.01 3.12 16 26 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 27 H 0.33 13.86 8.22 -89.70 -0.74 13.12 16 28 H 0.06 2.29 7.35 -2.39 -0.02 2.27 16 29 H 0.03 1.11 4.90 -2.38 -0.01 1.10 16 30 H 0.13 3.14 8.06 -2.91 -0.02 3.12 16 31 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 32 H 0.16 2.40 8.06 -2.91 -0.02 2.37 16 33 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 34 H 0.14 3.43 8.06 -2.91 -0.02 3.40 16 35 H 0.13 3.49 6.66 -2.91 -0.02 3.47 16 Total: -1.00 -62.28 297.52 3.44 -58.85 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 0.35 Total: 20.08 kcal Atomic # 6 Polarization: -39.01 SS G_CDS: 3.18 Total: -35.84 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: -2.90 Total: -85.43 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 0.78 Total: -3.39 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -62.28 3.44 -58.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389960958.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.127 kcal (2) G-P(sol) polarization free energy of solvation -62.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds