Wall clock time and date at job start Mon Mar 30 2020 06:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47069 * 2 1 4 4 C 1.50697 * 109.47346 * 120.00446 * 2 1 3 5 5 H 1.08000 * 120.00302 * 119.99413 * 4 2 1 6 6 C 1.37880 * 120.00073 * 300.00165 * 4 2 1 7 7 N 1.31520 * 119.99804 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00229 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46807 * 89.99743 * 8 6 4 10 10 H 1.48491 * 109.46979 * 209.99609 * 8 6 4 11 11 H 1.48501 * 109.47058 * 330.00064 * 8 6 4 12 12 N 1.46901 * 109.47060 * 240.00108 * 2 1 3 13 13 C 1.46903 * 110.99657 * 84.99999 * 12 2 1 14 14 C 1.50709 * 109.46896 * 180.02562 * 13 12 2 15 15 C 1.32572 * 119.99929 * 127.25479 * 14 13 12 16 16 C 1.47808 * 120.00062 * 8.03649 * 15 14 13 17 17 C 1.39547 * 120.11379 * 217.93350 * 16 15 14 18 18 C 1.37925 * 119.87887 * 179.74497 * 17 16 15 19 19 C 1.38574 * 120.11837 * 0.52677 * 18 17 16 20 20 F 1.35100 * 119.88758 * 179.74417 * 19 18 17 21 21 C 1.38576 * 120.23140 * 359.72526 * 19 18 17 22 22 C 1.37923 * 120.11701 * 0.02562 * 21 19 18 23 23 H 1.09004 * 109.46679 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47305 * 59.99525 * 1 2 3 25 25 H 1.08994 * 109.46849 * 299.99515 * 1 2 3 26 26 H 0.96997 * 119.99803 * 179.97438 * 7 6 4 27 27 H 1.00901 * 111.00230 * 321.04579 * 12 2 1 28 28 H 1.08994 * 109.47313 * 299.99916 * 13 12 2 29 29 H 1.08998 * 109.47491 * 59.99971 * 13 12 2 30 30 H 1.07994 * 119.99697 * 307.25402 * 14 13 12 31 31 H 1.07994 * 120.00150 * 188.03932 * 15 14 13 32 32 H 1.08000 * 120.05862 * 359.97438 * 17 16 15 33 33 H 1.08000 * 119.94186 * 180.25575 * 18 17 16 34 34 H 1.07999 * 119.94292 * 179.97438 * 21 19 18 35 35 H 1.08001 * 120.05742 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 0.9436 0.8300 2.6035 8 14 2.3214 -1.1206 4.0079 9 1 3.6298 -0.5462 4.4122 10 1 1.3433 -0.9496 5.1119 11 1 2.4860 -2.5665 3.7118 12 7 2.0197 -0.6925 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5873 -0.5217 -3.5561 15 6 1.9001 -0.4889 -4.6893 16 6 0.7387 0.4155 -4.8235 17 6 -0.3956 -0.0004 -5.5218 18 6 -1.4786 0.8455 -5.6395 19 6 -1.4374 2.1105 -5.0751 20 9 -2.4989 2.9372 -5.1977 21 6 -0.3114 2.5304 -4.3852 22 6 0.7751 1.6905 -4.2572 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 0.5137 0.8900 26 1 0.7089 1.1611 3.4845 27 1 1.4496 -1.4979 -1.4101 28 1 1.0871 0.6164 -2.5525 29 1 2.7588 1.0463 -2.1182 30 1 3.5089 -1.0818 -3.4994 31 1 2.1888 -1.1230 -5.5145 32 1 -0.4268 -0.9843 -5.9660 33 1 -2.3586 0.5231 -6.1761 34 1 -0.2842 3.5174 -3.9476 35 1 1.6523 2.0188 -3.7197 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389960971.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:58 Heat of formation + Delta-G solvation = -3.870026 kcal Electronic energy + Delta-G solvation = -17411.693156 eV Core-core repulsion = 14517.355025 eV Total energy + Delta-G solvation = -2894.338131 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.88546 -39.32605 -36.42214 -34.25271 -32.13661 -31.23526 -29.57949 -27.92050 -25.20220 -24.55137 -22.86263 -22.18692 -20.18598 -19.15179 -17.57276 -16.57280 -16.26488 -15.60524 -15.47366 -15.07890 -14.70354 -14.04051 -13.73660 -13.49566 -13.28814 -13.15058 -12.88092 -12.41893 -12.02280 -11.74035 -11.45299 -11.08330 -11.04551 -10.89860 -10.63809 -10.43328 -10.12618 -9.87975 -9.57414 -9.13796 -8.97600 -8.35609 -8.11085 -7.19509 -5.97858 -4.01319 0.89739 1.22459 2.39239 3.33412 3.39501 3.43688 3.65650 4.24958 4.44961 4.70079 4.78892 4.84172 5.10722 5.22928 5.33637 5.37740 5.49631 5.71016 5.85496 5.98900 6.08533 6.10491 6.16261 6.25017 6.42419 6.65912 6.71649 6.81693 6.85710 6.93383 7.10340 7.37500 7.74726 7.88659 8.27433 8.52811 8.61474 9.05866 9.64058 11.09156 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.028915 B = 0.004844 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.107262 B = 5779.478713 C = 6424.338137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.212 3.788 3 H 0.033 0.967 4 C -0.495 4.495 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.681 5.681 13 C 0.066 3.934 14 C -0.106 4.106 15 C -0.152 4.152 16 C -0.056 4.056 17 C -0.086 4.086 18 C -0.156 4.156 19 C 0.091 3.909 20 F -0.144 7.144 21 C -0.153 4.153 22 C -0.077 4.077 23 H 0.027 0.973 24 H 0.004 0.996 25 H 0.089 0.911 26 H 0.259 0.741 27 H 0.326 0.674 28 H 0.041 0.959 29 H 0.073 0.927 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.135 0.865 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.986 0.554 -16.299 16.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.105 3.895 3 H 0.050 0.950 4 C -0.534 4.534 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.311 5.311 13 C -0.063 4.063 14 C -0.124 4.124 15 C -0.170 4.170 16 C -0.056 4.056 17 C -0.104 4.104 18 C -0.175 4.175 19 C 0.071 3.929 20 F -0.122 7.122 21 C -0.172 4.172 22 C -0.094 4.094 23 H 0.046 0.954 24 H 0.023 0.977 25 H 0.107 0.893 26 H 0.069 0.931 27 H 0.142 0.858 28 H 0.059 0.941 29 H 0.091 0.909 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.153 0.847 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.436 0.796 -15.971 16.055 hybrid contribution -0.936 -0.172 0.681 1.170 sum -2.373 0.625 -15.290 15.486 Atomic orbital electron populations 1.22417 1.00668 0.99173 1.00460 1.19174 0.89623 0.94346 0.86398 0.94952 1.21160 1.30193 1.12462 0.89587 0.91936 1.24960 0.95325 0.95230 0.99057 1.69888 1.37293 1.23244 1.23342 0.86498 0.78431 0.80025 0.82429 1.20759 1.21428 1.19930 1.60777 1.58172 1.09061 1.03062 1.21488 0.99047 0.95958 0.89802 1.23579 0.97785 0.97490 0.93589 1.21542 0.95838 1.00569 0.99093 1.19146 0.94639 0.94064 0.97728 1.21092 0.91957 0.99220 0.98157 1.21021 1.00495 0.93033 1.02974 1.17789 0.84856 0.89220 1.00995 1.91481 1.54868 1.71482 1.94402 1.21106 0.93117 1.01663 1.01303 1.21367 0.98472 0.92647 0.96959 0.95398 0.97678 0.89269 0.93070 0.85765 0.94087 0.90858 0.86095 0.86177 0.85039 0.84971 0.84673 0.84419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.09 8.94 37.16 0.33 -3.76 16 2 C 0.21 5.33 2.57 -68.86 -0.18 5.15 16 3 H 0.03 0.89 7.80 -51.93 -0.40 0.48 16 4 C -0.50 -13.73 8.84 -34.44 -0.30 -14.04 16 5 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -25.80 11.32 55.43 0.63 -25.17 16 8 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 12 N -0.68 -14.32 6.22 -109.22 -0.68 -15.00 16 13 C 0.07 1.13 4.24 -4.97 -0.02 1.11 16 14 C -0.11 -1.47 9.72 -36.21 -0.35 -1.82 16 15 C -0.15 -1.84 9.79 -37.58 -0.37 -2.21 16 16 C -0.06 -0.71 5.15 -105.01 -0.54 -1.25 16 17 C -0.09 -0.99 9.78 -39.21 -0.38 -1.38 16 18 C -0.16 -1.84 10.01 -39.57 -0.40 -2.23 16 19 C 0.09 1.20 7.30 -39.33 -0.29 0.91 16 20 F -0.14 -1.96 17.26 2.25 0.04 -1.93 16 21 C -0.15 -2.01 10.01 -39.57 -0.40 -2.40 16 22 C -0.08 -1.01 7.31 -39.21 -0.29 -1.30 16 23 H 0.03 0.65 8.13 -51.93 -0.42 0.23 16 24 H 0.00 0.10 7.45 -51.93 -0.39 -0.29 16 25 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 26 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 27 H 0.33 6.63 8.46 -39.29 -0.33 6.30 16 28 H 0.04 0.72 4.12 -51.93 -0.21 0.51 16 29 H 0.07 1.29 7.91 -51.93 -0.41 0.88 16 30 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 31 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 34 H 0.14 1.58 8.06 -52.49 -0.42 1.15 16 35 H 0.14 1.76 6.35 -52.49 -0.33 1.43 16 LS Contribution 297.32 15.07 4.48 4.48 Total: -1.00 -29.02 297.32 -8.31 -37.33 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -4.48 Total: 5.57 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: -3.27 Total: -21.79 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: -0.05 Total: -40.17 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.02 -8.31 -37.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389960971.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.456 kcal (2) G-P(sol) polarization free energy of solvation -29.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds