Wall clock time and date at job start Mon Mar 30 2020 06:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47069 * 2 1 4 4 C 1.50697 * 109.47346 * 120.00446 * 2 1 3 5 5 H 1.08000 * 120.00302 * 119.99413 * 4 2 1 6 6 C 1.37880 * 120.00073 * 300.00165 * 4 2 1 7 7 N 1.31520 * 119.99804 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00229 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46807 * 89.99743 * 8 6 4 10 10 H 1.48491 * 109.46979 * 209.99609 * 8 6 4 11 11 H 1.48501 * 109.47058 * 330.00064 * 8 6 4 12 12 N 1.46901 * 109.47060 * 240.00108 * 2 1 3 13 13 C 1.46903 * 110.99657 * 84.99999 * 12 2 1 14 14 C 1.50709 * 109.46896 * 180.02562 * 13 12 2 15 15 C 1.32572 * 119.99929 * 127.25479 * 14 13 12 16 16 C 1.47808 * 120.00062 * 8.03649 * 15 14 13 17 17 C 1.39547 * 120.11379 * 217.93350 * 16 15 14 18 18 C 1.37925 * 119.87887 * 179.74497 * 17 16 15 19 19 C 1.38574 * 120.11837 * 0.52677 * 18 17 16 20 20 F 1.35100 * 119.88758 * 179.74417 * 19 18 17 21 21 C 1.38576 * 120.23140 * 359.72526 * 19 18 17 22 22 C 1.37923 * 120.11701 * 0.02562 * 21 19 18 23 23 H 1.09004 * 109.46679 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47305 * 59.99525 * 1 2 3 25 25 H 1.08994 * 109.46849 * 299.99515 * 1 2 3 26 26 H 0.96997 * 119.99803 * 179.97438 * 7 6 4 27 27 H 1.00901 * 111.00230 * 321.04579 * 12 2 1 28 28 H 1.08994 * 109.47313 * 299.99916 * 13 12 2 29 29 H 1.08998 * 109.47491 * 59.99971 * 13 12 2 30 30 H 1.07994 * 119.99697 * 307.25402 * 14 13 12 31 31 H 1.07994 * 120.00150 * 188.03932 * 15 14 13 32 32 H 1.08000 * 120.05862 * 359.97438 * 17 16 15 33 33 H 1.08000 * 119.94186 * 180.25575 * 18 17 16 34 34 H 1.07999 * 119.94292 * 179.97438 * 21 19 18 35 35 H 1.08001 * 120.05742 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 0.9436 0.8300 2.6035 8 14 2.3214 -1.1206 4.0079 9 1 3.6298 -0.5462 4.4122 10 1 1.3433 -0.9496 5.1119 11 1 2.4860 -2.5665 3.7118 12 7 2.0197 -0.6925 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5873 -0.5217 -3.5561 15 6 1.9001 -0.4889 -4.6893 16 6 0.7387 0.4155 -4.8235 17 6 -0.3956 -0.0004 -5.5218 18 6 -1.4786 0.8455 -5.6395 19 6 -1.4374 2.1105 -5.0751 20 9 -2.4989 2.9372 -5.1977 21 6 -0.3114 2.5304 -4.3852 22 6 0.7751 1.6905 -4.2572 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 0.5137 0.8900 26 1 0.7089 1.1611 3.4845 27 1 1.4496 -1.4979 -1.4101 28 1 1.0871 0.6164 -2.5525 29 1 2.7588 1.0463 -2.1182 30 1 3.5089 -1.0818 -3.4994 31 1 2.1888 -1.1230 -5.5145 32 1 -0.4268 -0.9843 -5.9660 33 1 -2.3586 0.5231 -6.1761 34 1 -0.2842 3.5174 -3.9476 35 1 1.6523 2.0188 -3.7197 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389960971.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:57 Heat of formation + Delta-G solvation = -20.145419 kcal Electronic energy + Delta-G solvation = -17412.398910 eV Core-core repulsion = 14517.355025 eV Total energy + Delta-G solvation = -2895.043885 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.92076 -40.32876 -38.00780 -35.71370 -33.94849 -32.20977 -30.97148 -29.36010 -27.26316 -25.98102 -23.84463 -23.31302 -22.11861 -20.22587 -18.67106 -18.28678 -17.48352 -16.87269 -16.65999 -16.49430 -16.24586 -15.32045 -15.17775 -14.78300 -14.50461 -14.47372 -14.11335 -13.80961 -13.52939 -13.21916 -13.10708 -12.82614 -12.76699 -12.27947 -12.15455 -12.04533 -11.94542 -11.69492 -11.05360 -10.61706 -10.48561 -10.08885 -9.18364 -8.84761 -8.09280 -6.20987 -0.10962 0.27319 1.36913 1.44310 1.44625 1.55718 2.44988 2.68299 3.18964 3.27441 3.70043 3.77954 3.86631 3.92940 4.21331 4.28236 4.38811 4.53528 4.65162 4.77111 4.87566 4.89611 4.97572 5.04053 5.14201 5.14423 5.19502 5.34188 5.44804 5.63741 5.68135 5.80645 5.83721 5.95847 6.27121 6.64258 6.83610 6.94746 7.49302 8.96183 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.028915 B = 0.004844 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.107262 B = 5779.478713 C = 6424.338137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.217 3.783 3 H 0.001 0.999 4 C -0.515 4.515 5 H 0.056 0.944 6 C 0.007 3.993 7 N -0.924 5.924 8 Si 0.962 3.038 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.268 1.268 12 N -0.684 5.684 13 C 0.070 3.930 14 C -0.126 4.126 15 C -0.121 4.121 16 C -0.072 4.072 17 C -0.080 4.080 18 C -0.155 4.155 19 C 0.074 3.926 20 F -0.150 7.150 21 C -0.167 4.167 22 C -0.090 4.090 23 H 0.031 0.969 24 H 0.019 0.981 25 H 0.061 0.939 26 H 0.261 0.739 27 H 0.331 0.669 28 H 0.039 0.961 29 H 0.060 0.940 30 H 0.131 0.869 31 H 0.154 0.846 32 H 0.163 0.837 33 H 0.157 0.843 34 H 0.139 0.861 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.988 -1.022 -17.568 17.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.108 3.892 3 H 0.019 0.981 4 C -0.554 4.554 5 H 0.075 0.925 6 C -0.191 4.191 7 N -0.565 5.565 8 Si 0.788 3.212 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.192 1.192 12 N -0.314 5.314 13 C -0.058 4.058 14 C -0.145 4.145 15 C -0.140 4.140 16 C -0.073 4.073 17 C -0.098 4.098 18 C -0.173 4.173 19 C 0.055 3.945 20 F -0.129 7.129 21 C -0.185 4.185 22 C -0.108 4.108 23 H 0.050 0.950 24 H 0.038 0.962 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.148 0.852 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.149 0.851 31 H 0.172 0.828 32 H 0.181 0.819 33 H 0.174 0.826 34 H 0.157 0.843 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.433 -0.783 -17.262 17.339 hybrid contribution -0.981 0.373 0.972 1.431 sum -2.414 -0.411 -16.290 16.473 Atomic orbital electron populations 1.22210 1.00205 0.99072 0.99752 1.18921 0.89835 0.92687 0.87717 0.98141 1.21471 1.30394 1.12517 0.91006 0.92544 1.25751 0.95435 0.95894 1.01999 1.70019 1.38084 1.24378 1.23988 0.85490 0.77898 0.79106 0.78717 1.20293 1.21007 1.19210 1.60631 1.57795 1.09618 1.03307 1.21447 0.98946 0.95448 0.89939 1.23323 0.99161 0.99110 0.92863 1.21816 0.94107 0.99022 0.99045 1.19395 0.95679 0.94004 0.98181 1.21439 0.90977 1.00314 0.97051 1.21345 1.01498 0.92200 1.02305 1.18052 0.84750 0.90020 1.01711 1.91463 1.55085 1.71820 1.94508 1.21245 0.93413 1.02138 1.01748 1.21441 0.98469 0.93423 0.97442 0.95013 0.96203 0.92027 0.93030 0.85184 0.94311 0.92186 0.85099 0.82835 0.81945 0.82563 0.84305 0.84867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.53 8.94 71.98 0.64 -6.89 16 2 C 0.22 11.10 2.57 44.17 0.11 11.22 16 3 H 0.00 0.04 7.80 -2.39 -0.02 0.02 16 4 C -0.52 -28.85 8.84 25.60 0.23 -28.63 16 5 H 0.06 3.16 7.81 -2.91 -0.02 3.14 16 6 C 0.01 0.40 5.30 84.65 0.45 0.85 16 7 N -0.92 -53.89 11.32 21.45 0.24 -53.65 16 8 Si 0.96 44.16 29.54 68.60 2.03 46.18 16 9 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 11 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 12 N -0.68 -28.74 6.22 -499.46 -3.11 -31.85 16 13 C 0.07 2.42 4.24 85.56 0.36 2.78 16 14 C -0.13 -3.27 9.72 24.54 0.24 -3.04 16 15 C -0.12 -2.57 9.79 23.65 0.23 -2.34 16 16 C -0.07 -1.69 5.15 -20.11 -0.10 -1.79 16 17 C -0.08 -1.58 9.78 22.51 0.22 -1.36 16 18 C -0.15 -3.25 10.01 22.28 0.22 -3.03 16 19 C 0.07 1.88 7.30 22.43 0.16 2.04 16 20 F -0.15 -4.01 17.26 44.97 0.78 -3.24 16 21 C -0.17 -4.34 10.01 22.28 0.22 -4.12 16 22 C -0.09 -2.33 7.31 22.51 0.16 -2.17 16 23 H 0.03 1.48 8.13 -2.38 -0.02 1.46 16 24 H 0.02 0.87 7.45 -2.39 -0.02 0.85 16 25 H 0.06 3.38 6.07 -2.39 -0.01 3.37 16 26 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 27 H 0.33 13.23 8.46 -89.69 -0.76 12.47 16 28 H 0.04 1.36 4.12 -2.39 -0.01 1.35 16 29 H 0.06 2.17 7.91 -2.39 -0.02 2.16 16 30 H 0.13 3.15 8.06 -2.91 -0.02 3.13 16 31 H 0.15 2.29 8.06 -2.91 -0.02 2.26 16 32 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 33 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16 34 H 0.14 3.34 8.06 -2.91 -0.02 3.31 16 35 H 0.13 3.48 6.35 -2.91 -0.02 3.46 16 Total: -1.00 -62.20 297.32 3.43 -58.78 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 0.33 Total: 20.24 kcal Atomic # 6 Polarization: -39.62 SS G_CDS: 3.16 Total: -36.47 kcal Atomic # 7 Polarization: -82.63 SS G_CDS: -2.86 Total: -85.50 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.78 Total: -3.24 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -62.20 3.43 -58.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389960971.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.631 kcal (2) G-P(sol) polarization free energy of solvation -62.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds