Wall clock time and date at job start Mon Mar 30 2020 06:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47055 * 2 1 4 4 C 1.50704 * 109.47049 * 240.00099 * 2 1 3 5 5 H 1.07999 * 120.00518 * 239.99882 * 4 2 1 6 6 C 1.37880 * 119.99568 * 59.99780 * 4 2 1 7 7 N 1.31509 * 120.00132 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99711 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47261 * 60.00196 * 8 6 4 10 10 H 1.48499 * 109.47006 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47317 * 300.00268 * 8 6 4 12 12 N 1.46903 * 109.47507 * 120.00320 * 2 1 3 13 13 C 1.46899 * 110.99998 * 275.00033 * 12 2 1 14 14 H 1.09006 * 110.53908 * 32.38542 * 13 12 2 15 15 C 1.54265 * 110.48438 * 269.77534 * 13 12 2 16 16 C 1.53877 * 106.59605 * 217.71134 * 15 13 12 17 17 C 1.54463 * 106.68421 * 0.15594 * 16 15 13 18 18 H 1.09003 * 110.40626 * 264.75463 * 17 16 15 19 19 O 1.42904 * 110.66002 * 142.05615 * 17 16 15 20 20 C 1.42891 * 114.00321 * 95.23946 * 19 17 16 21 21 F 1.39900 * 109.47122 * 300.00136 * 20 19 17 22 22 F 1.39900 * 109.47487 * 59.99811 * 20 19 17 23 23 C 1.54887 * 110.48630 * 154.99580 * 13 12 2 24 24 H 1.09007 * 109.47252 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47117 * 299.99316 * 1 2 3 26 26 H 1.08994 * 109.47620 * 59.99789 * 1 2 3 27 27 H 0.97002 * 119.99604 * 179.97438 * 7 6 4 28 28 H 1.00895 * 111.00368 * 151.04052 * 12 2 1 29 29 H 1.08995 * 110.03137 * 336.99058 * 15 13 12 30 30 H 1.08993 * 110.03408 * 98.42791 * 15 13 12 31 31 H 1.08999 * 110.03493 * 119.28247 * 16 15 13 32 32 H 1.09003 * 110.03187 * 240.66884 * 16 15 13 33 33 H 1.09000 * 109.47542 * 180.02562 * 20 19 17 34 34 H 1.09002 * 110.75856 * 274.93647 * 23 13 12 35 35 H 1.09006 * 110.75640 * 38.12633 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9434 0.8303 -2.6033 8 14 2.3223 -1.1194 -4.0080 9 1 1.8279 -2.5197 -4.0083 10 1 1.8277 -0.4190 -5.2205 11 1 3.8073 -1.1188 -4.0079 12 7 2.0197 -0.6926 1.1994 13 6 2.0826 0.2225 2.3469 14 1 1.2917 0.9700 2.2837 15 6 3.4648 0.9036 2.4192 16 6 3.8254 1.0089 3.9114 17 6 2.6510 0.3841 4.6965 18 1 1.9527 1.1579 5.0154 19 8 3.1324 -0.3517 5.8230 20 6 3.1369 0.3911 7.0437 21 9 3.9585 1.5147 6.9028 22 9 1.8337 0.8012 7.3449 23 6 1.9777 -0.5664 3.6756 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 0.7094 1.1619 -3.4843 28 1 2.9173 -1.1206 1.0286 29 1 4.2067 0.2990 1.8976 30 1 3.4146 1.8981 1.9761 31 1 4.7422 0.4554 4.1140 32 1 3.9509 2.0546 4.1923 33 1 3.5160 -0.2369 7.8499 34 1 0.9348 -0.7412 3.9400 35 1 2.5210 -1.5091 3.6091 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389991140.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:23 Heat of formation + Delta-G solvation = -190.844831 kcal Electronic energy + Delta-G solvation = -18690.978048 eV Core-core repulsion = 15357.762856 eV Total energy + Delta-G solvation = -3333.215192 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.128 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.99117 -48.11153 -40.16940 -38.08606 -36.08239 -33.79308 -30.42695 -29.64660 -27.57886 -26.93690 -25.76228 -22.19282 -21.82609 -21.12271 -19.36464 -18.63876 -18.57683 -18.38008 -17.13316 -16.48333 -16.33633 -15.43305 -15.13481 -14.97841 -14.68529 -14.52779 -14.40396 -14.18764 -13.85856 -13.60790 -13.37143 -13.17038 -12.87655 -12.75959 -12.55331 -12.38778 -12.19110 -12.09113 -11.80710 -11.74007 -11.42123 -11.26473 -10.88829 -10.55697 -8.99127 -8.12372 -6.26361 1.43371 1.45103 1.52647 2.08204 2.42519 2.77121 3.16322 3.37099 3.57080 3.77293 3.83825 3.90931 3.92884 4.23694 4.41304 4.50953 4.55900 4.61802 4.85466 4.88674 4.96139 5.00811 5.08691 5.19262 5.22429 5.29558 5.52288 5.68735 5.70405 5.87846 6.23219 6.50170 6.79611 7.02492 7.44170 8.93134 Molecular weight = 249.13amu Principal moments of inertia in cm(-1) A = 0.053301 B = 0.004247 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.193317 B = 6590.616847 C = 6741.368685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.218 3.782 3 H -0.028 1.028 4 C -0.538 4.538 5 H 0.059 0.941 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.962 3.038 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.271 1.271 12 N -0.679 5.679 13 C 0.084 3.916 14 H 0.064 0.936 15 C -0.144 4.144 16 C -0.127 4.127 17 C 0.076 3.924 18 H 0.079 0.921 19 O -0.383 6.383 20 C 0.396 3.604 21 F -0.219 7.219 22 F -0.221 7.221 23 C -0.094 4.094 24 H 0.027 0.973 25 H 0.021 0.979 26 H 0.056 0.944 27 H 0.262 0.738 28 H 0.335 0.665 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.214 0.786 34 H 0.074 0.926 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.387 -0.506 18.189 18.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.109 3.891 3 H -0.010 1.010 4 C -0.577 4.577 5 H 0.078 0.922 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.787 3.213 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.196 1.196 12 N -0.309 5.309 13 C -0.028 4.028 14 H 0.082 0.918 15 C -0.184 4.184 16 C -0.165 4.165 17 C 0.019 3.981 18 H 0.097 0.903 19 O -0.304 6.304 20 C 0.306 3.694 21 F -0.201 7.201 22 F -0.203 7.203 23 C -0.132 4.132 24 H 0.046 0.954 25 H 0.040 0.960 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.153 0.847 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.230 0.770 34 H 0.092 0.908 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.722 -0.789 18.187 18.807 hybrid contribution 0.718 0.816 -1.305 1.698 sum 5.441 0.028 16.882 17.738 Atomic orbital electron populations 1.21572 0.97990 0.98821 0.98937 1.18877 0.92463 0.90919 0.86806 1.01047 1.21571 1.31718 1.12721 0.91649 0.92247 1.25719 0.95158 0.95650 1.02015 1.70018 1.37475 1.24052 1.24190 0.85558 0.78731 0.78657 0.78345 1.19674 1.21020 1.19574 1.60621 1.32453 1.32659 1.05144 1.22316 0.95787 0.93391 0.91258 0.91773 1.22769 0.97961 1.01044 0.96597 1.22517 0.98684 1.01430 0.93894 1.23129 0.95469 0.94272 0.85229 0.90257 1.88432 1.84650 1.40229 1.17137 1.23951 0.73827 0.80992 0.90664 1.93054 1.73022 1.57685 1.96387 1.93038 1.41914 1.92105 1.93283 1.22401 1.00747 0.98455 0.91625 0.95377 0.96049 0.92524 0.92876 0.84656 0.91670 0.92726 0.90070 0.90810 0.76996 0.90751 0.90071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.80 9.18 71.98 0.66 -5.14 16 2 C 0.22 11.10 2.47 44.17 0.11 11.20 16 3 H -0.03 -1.57 7.85 -2.39 -0.02 -1.59 16 4 C -0.54 -29.53 8.59 25.60 0.22 -29.31 16 5 H 0.06 3.18 7.62 -2.91 -0.02 3.15 16 6 C 0.01 0.76 5.30 84.66 0.45 1.21 16 7 N -0.92 -53.02 11.32 21.45 0.24 -52.77 16 8 Si 0.96 43.40 29.54 68.60 2.03 45.42 16 9 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 11 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 12 N -0.68 -28.52 6.16 -467.82 -2.88 -31.40 16 13 C 0.08 2.92 2.94 45.99 0.14 3.05 16 14 H 0.06 2.41 7.22 -2.38 -0.02 2.40 16 15 C -0.14 -4.51 6.49 31.32 0.20 -4.30 16 16 C -0.13 -3.22 6.14 31.39 0.19 -3.03 16 17 C 0.08 1.91 3.02 31.74 0.10 2.01 16 18 H 0.08 1.97 7.27 -2.39 -0.02 1.95 16 19 O -0.38 -8.42 10.36 -148.98 -1.54 -9.96 16 20 C 0.40 6.43 6.26 113.37 0.71 7.14 16 21 F -0.22 -4.31 16.78 44.97 0.75 -3.55 16 22 F -0.22 -4.46 16.68 44.97 0.75 -3.71 16 23 C -0.09 -2.72 6.28 31.88 0.20 -2.52 16 24 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 25 H 0.02 0.95 7.50 -2.38 -0.02 0.93 16 26 H 0.06 3.13 6.07 -2.39 -0.01 3.11 16 27 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 28 H 0.34 13.74 7.56 -89.70 -0.68 13.07 16 29 H 0.06 2.09 7.52 -2.39 -0.02 2.07 16 30 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.08 1.95 8.07 -2.39 -0.02 1.93 16 32 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.21 1.25 8.14 -2.39 -0.02 1.24 16 34 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 Total: -1.00 -61.48 292.65 2.74 -58.74 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 0.41 Total: 16.92 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: 2.98 Total: -19.68 kcal Atomic # 7 Polarization: -81.53 SS G_CDS: -2.64 Total: -84.17 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: -1.54 Total: -9.96 kcal Atomic # 9 Polarization: -8.77 SS G_CDS: 1.50 Total: -7.27 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -61.48 2.74 -58.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389991140.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.102 kcal (2) G-P(sol) polarization free energy of solvation -61.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds