Wall clock time and date at job start Mon Mar 30 2020 06:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47060 * 2 1 4 4 C 1.50701 * 109.47037 * 240.00670 * 2 1 3 5 5 H 1.08005 * 119.99767 * 245.61219 * 4 2 1 6 6 C 1.37878 * 120.00200 * 65.61366 * 4 2 1 7 7 N 1.31519 * 119.99974 * 196.67568 * 6 4 2 8 8 Si 1.86797 * 120.00098 * 16.67337 * 6 4 2 9 9 H 1.48493 * 109.47378 * 180.02562 * 8 6 4 10 10 H 1.48500 * 109.47083 * 60.00089 * 8 6 4 11 11 H 1.48500 * 109.47106 * 300.00200 * 8 6 4 12 12 N 1.46899 * 109.47394 * 120.00415 * 2 1 3 13 13 C 1.46895 * 110.99968 * 274.99991 * 12 2 1 14 14 H 1.09002 * 110.01556 * 325.70099 * 13 12 2 15 15 C 1.53873 * 110.03324 * 87.09113 * 13 12 2 16 16 C 1.54272 * 106.59686 * 119.28270 * 15 13 12 17 17 C 1.54886 * 104.19426 * 23.61186 * 16 15 13 18 18 H 1.09003 * 110.75686 * 80.55948 * 17 16 15 19 19 O 1.42900 * 110.75305 * 203.73960 * 17 16 15 20 20 C 1.42904 * 114.00231 * 268.54530 * 19 17 16 21 21 F 1.39905 * 109.47146 * 300.00509 * 20 19 17 22 22 F 1.39904 * 109.46852 * 59.99846 * 20 19 17 23 23 C 1.54269 * 110.03284 * 204.30825 * 13 12 2 24 24 H 1.09001 * 109.47333 * 66.89758 * 1 2 3 25 25 H 1.09004 * 109.46924 * 186.89622 * 1 2 3 26 26 H 1.09000 * 109.46896 * 306.89684 * 1 2 3 27 27 H 0.97000 * 120.00142 * 355.67947 * 7 6 4 28 28 H 1.00904 * 110.99877 * 151.04692 * 12 2 1 29 29 H 1.08995 * 110.03485 * 238.56749 * 15 13 12 30 30 H 1.09002 * 110.03180 * 0.02562 * 15 13 12 31 31 H 1.09004 * 110.48271 * 142.28999 * 16 15 13 32 32 H 1.08993 * 110.48652 * 264.80093 * 16 15 13 33 33 H 1.08996 * 109.47145 * 179.97438 * 20 19 17 34 34 H 1.08998 * 110.48656 * 335.78600 * 23 13 12 35 35 H 1.09006 * 110.48731 * 98.42407 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.5764 -1.6382 -1.1341 6 6 1.7973 -0.1755 -2.4795 7 7 1.9319 -0.9251 -3.5517 8 14 1.2877 1.6137 -2.6486 9 1 1.0970 1.9405 -4.0845 10 1 2.3457 2.4857 -2.0783 11 1 0.0146 1.8370 -1.9174 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2224 2.3468 14 1 2.3523 1.2238 2.0112 15 6 0.7241 0.2566 3.0687 16 6 0.9780 -0.2341 4.5091 17 6 2.4822 0.0485 4.7470 18 1 2.6427 1.0957 5.0033 19 8 3.0028 -0.8060 5.7672 20 6 2.9345 -0.2502 7.0819 21 9 3.6702 0.9391 7.1242 22 9 1.5999 0.0154 7.4071 23 6 3.1154 -0.2871 3.3731 24 1 -0.3634 0.4032 -0.9452 25 1 -0.3633 -1.0203 0.1234 26 1 -0.3633 0.6170 0.8218 27 1 2.2567 -1.8354 -3.4695 28 1 2.9174 -1.1205 1.0286 29 1 0.3350 1.2746 3.0843 30 1 0.0183 -0.4061 2.5679 31 1 0.3678 0.3274 5.2165 32 1 0.7707 -1.3011 4.5907 33 1 3.3484 -0.9597 7.7983 34 1 3.2561 -1.3632 3.2707 35 1 4.0641 0.2358 3.2514 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389991143.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:27 Heat of formation + Delta-G solvation = -169.192541 kcal Electronic energy + Delta-G solvation = -18812.528400 eV Core-core repulsion = 15480.252121 eV Total energy + Delta-G solvation = -3332.276278 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.128 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.25231 -47.36301 -39.07689 -36.92169 -34.47665 -32.06093 -29.51801 -28.34561 -26.30276 -25.25298 -24.20219 -21.05306 -20.02382 -19.51360 -18.54295 -17.86003 -17.77678 -17.43228 -15.66813 -15.39775 -14.64663 -14.42947 -14.16024 -13.75174 -13.57820 -13.40452 -13.33895 -13.05587 -12.51374 -12.35466 -12.15254 -11.78663 -11.53152 -11.34139 -10.98376 -10.79864 -10.73657 -10.40577 -10.22361 -10.17257 -9.91636 -9.57714 -8.87588 -8.24722 -7.55938 -6.46968 -4.08471 2.84175 3.37707 3.40368 3.47856 3.58932 4.28433 4.47000 4.47410 4.68333 4.74608 4.92060 5.03203 5.26674 5.36847 5.58822 5.62082 5.71191 5.86919 6.00949 6.04660 6.18945 6.38541 6.44385 6.55128 6.64131 6.72638 6.82573 6.98211 7.47777 7.75821 8.12262 8.38356 8.49057 8.94338 9.60546 10.92992 Molecular weight = 249.13amu Principal moments of inertia in cm(-1) A = 0.049152 B = 0.004565 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.520745 B = 6132.184059 C = 6205.875420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.188 3.812 3 H -0.007 1.007 4 C -0.605 4.605 5 H 0.060 0.940 6 C 0.032 3.968 7 N -0.906 5.906 8 Si 1.047 2.953 9 H -0.285 1.285 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.672 5.672 13 C 0.083 3.917 14 H 0.043 0.957 15 C -0.115 4.115 16 C -0.138 4.138 17 C 0.072 3.928 18 H 0.079 0.921 19 O -0.376 6.376 20 C 0.403 3.597 21 F -0.212 7.212 22 F -0.209 7.209 23 C -0.116 4.116 24 H 0.050 0.950 25 H 0.049 0.951 26 H 0.022 0.978 27 H 0.268 0.732 28 H 0.338 0.662 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.164 0.836 34 H 0.088 0.912 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.102 2.987 20.475 20.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.079 3.921 3 H 0.011 0.989 4 C -0.643 4.643 5 H 0.078 0.922 6 C -0.174 4.174 7 N -0.540 5.540 8 Si 0.875 3.125 9 H -0.211 1.211 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.304 5.304 13 C -0.028 4.028 14 H 0.061 0.939 15 C -0.154 4.154 16 C -0.176 4.176 17 C 0.015 3.985 18 H 0.097 0.903 19 O -0.297 6.297 20 C 0.311 3.689 21 F -0.194 7.194 22 F -0.191 7.191 23 C -0.154 4.154 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.041 0.959 27 H 0.078 0.922 28 H 0.157 0.843 29 H 0.076 0.924 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.180 0.820 34 H 0.107 0.893 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.086 3.740 19.466 19.823 hybrid contribution 1.128 -0.324 1.014 1.551 sum 1.214 3.416 20.480 20.799 Atomic orbital electron populations 1.22221 0.98355 1.00237 0.98955 1.19485 0.92205 0.92222 0.88227 0.98907 1.22106 1.40671 1.10220 0.91298 0.92216 1.25714 0.94669 1.04949 0.92062 1.70855 1.41768 1.10020 1.31347 0.84020 0.77115 0.75334 0.75994 1.21130 1.21250 1.19930 1.60755 1.32550 1.32035 1.05031 1.22107 0.93603 0.95184 0.91873 0.93935 1.22281 0.98434 1.01012 0.93635 1.22848 0.94416 1.02530 0.97756 1.23417 0.94516 0.93365 0.87195 0.90319 1.88437 1.82213 1.44254 1.14795 1.23148 0.75000 0.82255 0.88512 1.93053 1.77380 1.52413 1.96516 1.93072 1.38232 1.94952 1.92858 1.22603 0.98211 1.03307 0.91308 0.93100 0.93209 0.95946 0.92215 0.84340 0.92426 0.89434 0.91610 0.90406 0.81957 0.89348 0.91208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.20 37.16 0.30 -2.83 16 2 C 0.19 4.45 2.18 -68.87 -0.15 4.30 16 3 H -0.01 -0.16 6.11 -51.93 -0.32 -0.47 16 4 C -0.60 -16.87 8.83 -34.44 -0.30 -17.18 16 5 H 0.06 1.79 7.92 -52.48 -0.42 1.37 16 6 C 0.03 0.91 5.30 -17.82 -0.09 0.81 16 7 N -0.91 -27.78 13.70 55.43 0.76 -27.02 16 8 Si 1.05 25.22 26.27 -169.99 -4.46 20.75 16 9 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.27 -6.11 5.72 56.52 0.32 -5.78 16 12 N -0.67 -13.72 6.01 -99.79 -0.60 -14.32 16 13 C 0.08 1.40 3.24 -66.60 -0.22 1.18 16 14 H 0.04 0.75 7.45 -51.93 -0.39 0.36 16 15 C -0.12 -1.76 5.30 -25.61 -0.14 -1.90 16 16 C -0.14 -1.82 6.01 -25.07 -0.15 -1.97 16 17 C 0.07 0.93 3.09 -24.70 -0.08 0.85 16 18 H 0.08 0.98 7.31 -51.93 -0.38 0.60 16 19 O -0.38 -4.50 10.43 -35.23 -0.37 -4.87 16 20 C 0.40 3.71 6.28 101.05 0.63 4.35 16 21 F -0.21 -2.26 16.67 2.25 0.04 -2.23 16 22 F -0.21 -2.24 16.27 2.25 0.04 -2.20 16 23 C -0.12 -1.66 5.99 -25.03 -0.15 -1.81 16 24 H 0.05 1.19 4.81 -51.93 -0.25 0.94 16 25 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.02 0.43 6.46 -51.93 -0.34 0.10 16 27 H 0.27 8.19 8.73 -40.82 -0.36 7.83 16 28 H 0.34 6.94 7.86 -39.29 -0.31 6.63 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.09 1.48 6.61 -51.93 -0.34 1.13 16 31 H 0.07 0.81 7.73 -51.93 -0.40 0.40 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.16 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 1.31 7.97 -51.93 -0.41 0.90 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 283.36 15.07 4.27 4.27 Total: -1.00 -30.33 283.36 -5.56 -35.89 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -4.90 Total: 3.92 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: -0.34 Total: -14.20 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.16 Total: -41.34 kcal Atomic # 8 Polarization: -4.50 SS G_CDS: -0.37 Total: -4.87 kcal Atomic # 9 Polarization: -4.50 SS G_CDS: 0.07 Total: -4.43 kcal Atomic # 14 Polarization: 25.22 SS G_CDS: -4.46 Total: 20.75 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.33 -5.56 -35.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389991143.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.303 kcal (2) G-P(sol) polarization free energy of solvation -30.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds