Wall clock time and date at job start Mon Mar 30 2020 06:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47060 * 2 1 4 4 C 1.50701 * 109.47037 * 240.00670 * 2 1 3 5 5 H 1.08005 * 119.99767 * 245.61219 * 4 2 1 6 6 C 1.37878 * 120.00200 * 65.61366 * 4 2 1 7 7 N 1.31519 * 119.99974 * 196.67568 * 6 4 2 8 8 Si 1.86797 * 120.00098 * 16.67337 * 6 4 2 9 9 H 1.48493 * 109.47378 * 180.02562 * 8 6 4 10 10 H 1.48500 * 109.47083 * 60.00089 * 8 6 4 11 11 H 1.48500 * 109.47106 * 300.00200 * 8 6 4 12 12 N 1.46899 * 109.47394 * 120.00415 * 2 1 3 13 13 C 1.46895 * 110.99968 * 274.99991 * 12 2 1 14 14 H 1.09002 * 110.01556 * 325.70099 * 13 12 2 15 15 C 1.53873 * 110.03324 * 87.09113 * 13 12 2 16 16 C 1.54272 * 106.59686 * 119.28270 * 15 13 12 17 17 C 1.54886 * 104.19426 * 23.61186 * 16 15 13 18 18 H 1.09003 * 110.75686 * 80.55948 * 17 16 15 19 19 O 1.42900 * 110.75305 * 203.73960 * 17 16 15 20 20 C 1.42904 * 114.00231 * 268.54530 * 19 17 16 21 21 F 1.39905 * 109.47146 * 300.00509 * 20 19 17 22 22 F 1.39904 * 109.46852 * 59.99846 * 20 19 17 23 23 C 1.54269 * 110.03284 * 204.30825 * 13 12 2 24 24 H 1.09001 * 109.47333 * 66.89758 * 1 2 3 25 25 H 1.09004 * 109.46924 * 186.89622 * 1 2 3 26 26 H 1.09000 * 109.46896 * 306.89684 * 1 2 3 27 27 H 0.97000 * 120.00142 * 355.67947 * 7 6 4 28 28 H 1.00904 * 110.99877 * 151.04692 * 12 2 1 29 29 H 1.08995 * 110.03485 * 238.56749 * 15 13 12 30 30 H 1.09002 * 110.03180 * 0.02562 * 15 13 12 31 31 H 1.09004 * 110.48271 * 142.28999 * 16 15 13 32 32 H 1.08993 * 110.48652 * 264.80093 * 16 15 13 33 33 H 1.08996 * 109.47145 * 179.97438 * 20 19 17 34 34 H 1.08998 * 110.48656 * 335.78600 * 23 13 12 35 35 H 1.09006 * 110.48731 * 98.42407 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.5764 -1.6382 -1.1341 6 6 1.7973 -0.1755 -2.4795 7 7 1.9319 -0.9251 -3.5517 8 14 1.2877 1.6137 -2.6486 9 1 1.0970 1.9405 -4.0845 10 1 2.3457 2.4857 -2.0783 11 1 0.0146 1.8370 -1.9174 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2224 2.3468 14 1 2.3523 1.2238 2.0112 15 6 0.7241 0.2566 3.0687 16 6 0.9780 -0.2341 4.5091 17 6 2.4822 0.0485 4.7470 18 1 2.6427 1.0957 5.0033 19 8 3.0028 -0.8060 5.7672 20 6 2.9345 -0.2502 7.0819 21 9 3.6702 0.9391 7.1242 22 9 1.5999 0.0154 7.4071 23 6 3.1154 -0.2871 3.3731 24 1 -0.3634 0.4032 -0.9452 25 1 -0.3633 -1.0203 0.1234 26 1 -0.3633 0.6170 0.8218 27 1 2.2567 -1.8354 -3.4695 28 1 2.9174 -1.1205 1.0286 29 1 0.3350 1.2746 3.0843 30 1 0.0183 -0.4061 2.5679 31 1 0.3678 0.3274 5.2165 32 1 0.7707 -1.3011 4.5907 33 1 3.3484 -0.9597 7.7983 34 1 3.2561 -1.3632 3.2707 35 1 4.0641 0.2358 3.2514 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389991143.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:26 Heat of formation + Delta-G solvation = -190.889717 kcal Electronic energy + Delta-G solvation = -18813.469260 eV Core-core repulsion = 15480.252121 eV Total energy + Delta-G solvation = -3333.217138 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.128 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.00543 -48.12462 -40.20906 -38.18512 -36.09325 -34.03085 -31.09920 -29.52582 -27.65553 -26.59824 -25.72824 -22.16839 -21.73615 -20.91064 -19.63119 -19.35187 -18.61601 -18.55751 -16.86169 -16.57488 -16.42522 -15.59262 -15.25389 -15.11862 -14.76813 -14.54533 -14.46976 -14.36983 -14.00120 -13.65930 -13.40277 -13.36610 -13.00276 -12.62957 -12.45860 -12.35660 -12.09734 -11.97999 -11.72036 -11.48867 -11.42047 -11.18247 -10.97421 -10.41302 -9.22064 -8.74235 -6.38054 1.45124 1.51178 1.70798 2.05802 2.47435 2.75027 3.05426 3.40584 3.45967 3.64260 3.77600 3.88356 3.94395 4.23637 4.38599 4.47724 4.50207 4.62810 4.66521 4.83004 4.86505 4.94167 5.02165 5.06082 5.07381 5.21143 5.38065 5.62558 5.66934 5.82039 6.02002 6.30095 6.69323 6.78744 7.40579 8.63070 Molecular weight = 249.13amu Principal moments of inertia in cm(-1) A = 0.049152 B = 0.004565 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.520745 B = 6132.184059 C = 6205.875420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.190 3.810 3 H -0.004 1.004 4 C -0.607 4.607 5 H 0.022 0.978 6 C -0.019 4.019 7 N -0.938 5.938 8 Si 1.084 2.916 9 H -0.289 1.289 10 H -0.267 1.267 11 H -0.242 1.242 12 N -0.677 5.677 13 C 0.078 3.922 14 H 0.040 0.960 15 C -0.114 4.114 16 C -0.129 4.129 17 C 0.078 3.922 18 H 0.086 0.914 19 O -0.387 6.387 20 C 0.398 3.602 21 F -0.220 7.220 22 F -0.218 7.218 23 C -0.112 4.112 24 H 0.041 0.959 25 H 0.038 0.962 26 H 0.053 0.947 27 H 0.252 0.748 28 H 0.333 0.667 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.212 0.788 34 H 0.079 0.921 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.636 4.598 22.814 23.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.080 3.920 3 H 0.014 0.986 4 C -0.645 4.645 5 H 0.041 0.959 6 C -0.218 4.218 7 N -0.574 5.574 8 Si 0.905 3.095 9 H -0.215 1.215 10 H -0.193 1.193 11 H -0.166 1.166 12 N -0.308 5.308 13 C -0.032 4.032 14 H 0.058 0.942 15 C -0.152 4.152 16 C -0.167 4.167 17 C 0.021 3.979 18 H 0.104 0.896 19 O -0.308 6.308 20 C 0.307 3.693 21 F -0.203 7.203 22 F -0.200 7.200 23 C -0.150 4.150 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.151 0.849 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.228 0.772 34 H 0.098 0.902 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.381 5.337 21.849 22.494 hybrid contribution 1.337 -0.915 0.363 1.660 sum 0.956 4.422 22.212 22.668 Atomic orbital electron populations 1.22109 0.97083 1.00243 0.99714 1.19357 0.93097 0.91788 0.87715 0.98623 1.22354 1.39667 1.08931 0.93527 0.95931 1.27155 0.94349 1.08423 0.91824 1.70987 1.44313 1.09630 1.32512 0.83578 0.78831 0.70717 0.76345 1.21522 1.19251 1.16618 1.60726 1.32381 1.32792 1.04904 1.22224 0.95605 0.94243 0.91108 0.94167 1.22239 0.96958 1.01546 0.94474 1.22771 0.95004 1.02271 0.96688 1.23248 0.93900 0.93874 0.86906 0.89556 1.88423 1.82123 1.44481 1.15786 1.23901 0.74639 0.82722 0.87990 1.93037 1.77529 1.53235 1.96460 1.93054 1.39098 1.95061 1.92768 1.22503 0.98010 1.02740 0.91715 0.93992 0.94284 0.92766 0.93917 0.84921 0.91018 0.91100 0.90206 0.91026 0.77208 0.90209 0.90301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.77 8.20 71.98 0.59 -5.18 16 2 C 0.19 8.85 2.18 44.17 0.10 8.95 16 3 H 0.00 -0.17 6.11 -2.39 -0.01 -0.18 16 4 C -0.61 -34.46 8.83 25.60 0.23 -34.23 16 5 H 0.02 1.41 7.92 -2.91 -0.02 1.38 16 6 C -0.02 -1.11 5.30 84.65 0.45 -0.66 16 7 N -0.94 -59.12 13.70 21.45 0.29 -58.82 16 8 Si 1.08 49.76 26.27 68.60 1.80 51.56 16 9 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 10 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 11 H -0.24 -9.86 5.72 99.48 0.57 -9.30 16 12 N -0.68 -27.31 6.01 -469.61 -2.82 -30.13 16 13 C 0.08 2.50 3.24 45.64 0.15 2.65 16 14 H 0.04 1.32 7.45 -2.39 -0.02 1.30 16 15 C -0.11 -3.21 5.30 31.32 0.17 -3.04 16 16 C -0.13 -3.11 6.01 31.67 0.19 -2.92 16 17 C 0.08 1.82 3.09 31.91 0.10 1.92 16 18 H 0.09 1.90 7.31 -2.39 -0.02 1.88 16 19 O -0.39 -8.25 10.43 -148.98 -1.55 -9.80 16 20 C 0.40 6.09 6.28 113.37 0.71 6.80 16 21 F -0.22 -4.12 16.67 44.97 0.75 -3.37 16 22 F -0.22 -4.03 16.27 44.97 0.73 -3.30 16 23 C -0.11 -3.00 5.99 31.69 0.19 -2.81 16 24 H 0.04 1.86 4.81 -2.39 -0.01 1.85 16 25 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 26 H 0.05 1.97 6.46 -2.39 -0.02 1.96 16 27 H 0.25 16.13 8.73 -92.71 -0.81 15.32 16 28 H 0.33 13.84 7.86 -89.69 -0.71 13.13 16 29 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.07 2.25 6.61 -2.39 -0.02 2.24 16 31 H 0.08 1.71 7.73 -2.38 -0.02 1.69 16 32 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.21 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.08 2.29 7.97 -2.39 -0.02 2.27 16 35 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 Total: -1.00 -66.15 283.36 2.28 -63.86 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: 0.22 Total: 18.53 kcal Atomic # 6 Polarization: -31.40 SS G_CDS: 2.87 Total: -28.53 kcal Atomic # 7 Polarization: -86.42 SS G_CDS: -2.53 Total: -88.95 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -1.55 Total: -9.80 kcal Atomic # 9 Polarization: -8.15 SS G_CDS: 1.48 Total: -6.67 kcal Atomic # 14 Polarization: 49.76 SS G_CDS: 1.80 Total: 51.56 kcal Total: -66.15 2.28 -63.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389991143.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.028 kcal (2) G-P(sol) polarization free energy of solvation -66.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds