Wall clock time and date at job start Mon Mar 30 2020 06:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 N 1.46895 * 109.47363 * 120.00320 * 2 1 3 13 13 C 1.46904 * 110.99921 * 275.00164 * 12 2 1 14 14 H 1.09005 * 110.43072 * 327.53741 * 13 12 2 15 15 C 1.54886 * 110.48786 * 90.22000 * 13 12 2 16 16 C 1.54891 * 102.74896 * 156.62272 * 15 13 12 17 17 C 1.54261 * 104.19510 * 322.05727 * 16 15 13 18 18 H 1.08998 * 110.03442 * 264.32350 * 17 16 15 19 19 O 1.42898 * 110.03369 * 142.89231 * 17 16 15 20 20 C 1.42903 * 113.99973 * 92.83326 * 19 17 16 21 21 F 1.39900 * 109.46943 * 300.00380 * 20 19 17 22 22 F 1.39900 * 109.47171 * 60.00287 * 20 19 17 23 23 C 1.53878 * 106.59836 * 23.61223 * 17 16 15 24 24 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 25 25 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 26 26 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 27 27 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 28 28 H 1.00890 * 111.00763 * 151.04479 * 12 2 1 29 29 H 1.09005 * 110.75861 * 274.93895 * 15 13 12 30 30 H 1.08998 * 110.75646 * 38.30765 * 15 13 12 31 31 H 1.08998 * 110.48532 * 203.38021 * 16 15 13 32 32 H 1.08998 * 110.59915 * 80.79259 * 16 15 13 33 33 H 1.08995 * 109.47203 * 179.97438 * 20 19 17 34 34 H 1.09006 * 110.03051 * 240.71753 * 23 17 16 35 35 H 1.08993 * 110.07306 * 119.30629 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 1.8153 -2.5276 -4.0022 10 1 1.8119 -0.4304 -5.2204 11 1 3.7959 -1.1284 -4.0138 12 7 2.0197 -0.6925 1.1993 13 6 2.0825 0.2225 2.3469 14 1 2.3201 1.2333 2.0150 15 6 0.7449 0.2056 3.1276 16 6 1.1668 0.6841 4.5390 17 6 2.5430 0.0253 4.7661 18 1 2.4249 -0.9033 5.3245 19 8 3.4021 0.9188 5.4772 20 6 3.3759 0.7449 6.8953 21 9 2.0764 0.9584 7.3674 22 9 3.7797 -0.5563 7.2131 23 6 3.1253 -0.2681 3.3723 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7011 1.1560 -3.4844 28 1 2.9173 -1.1205 1.0287 29 1 0.0293 0.8973 2.6830 30 1 0.3342 -0.8033 3.1685 31 1 0.4519 0.3420 5.2873 32 1 1.2547 1.7702 4.5653 33 1 4.0542 1.4594 7.3616 34 1 3.2896 -1.3392 3.2543 35 1 4.0633 0.2704 3.2378 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389991146.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:34 Heat of formation + Delta-G solvation = -170.152453 kcal Electronic energy + Delta-G solvation = -18727.579957 eV Core-core repulsion = 15395.262054 eV Total energy + Delta-G solvation = -3332.317903 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.128 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.19913 -47.30745 -39.01405 -36.69145 -34.34677 -31.93324 -29.06066 -28.11924 -26.03055 -25.32315 -24.60401 -20.65471 -20.15515 -19.66969 -18.58670 -17.75802 -17.74094 -16.43779 -15.42044 -15.05128 -14.69718 -14.36613 -14.00678 -13.83973 -13.68219 -13.28357 -13.17561 -13.02230 -12.50247 -12.32398 -11.84839 -11.34473 -11.16410 -10.90813 -10.88744 -10.73921 -10.61789 -10.58460 -10.23251 -10.03787 -10.00288 -9.75744 -8.78334 -8.44645 -7.30013 -6.01425 -4.08081 2.92593 3.31555 3.36034 3.38757 3.54568 4.33982 4.40485 4.55885 4.74651 4.83180 4.96801 5.29167 5.32682 5.56821 5.65659 5.74202 5.82598 5.99722 6.04097 6.23254 6.29043 6.52170 6.67265 6.74266 6.94846 7.20161 7.27051 7.54099 7.79225 7.92146 8.29341 8.41152 8.68678 9.02580 9.57802 11.04635 Molecular weight = 249.13amu Principal moments of inertia in cm(-1) A = 0.053298 B = 0.004283 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.222573 B = 6535.399908 C = 6839.187967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.212 3.788 3 H 0.001 0.999 4 C -0.520 4.520 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.682 5.682 13 C 0.086 3.914 14 H 0.046 0.954 15 C -0.108 4.108 16 C -0.143 4.143 17 C 0.078 3.922 18 H 0.075 0.925 19 O -0.379 6.379 20 C 0.402 3.598 21 F -0.210 7.210 22 F -0.212 7.212 23 C -0.122 4.122 24 H 0.010 0.990 25 H 0.078 0.922 26 H 0.029 0.971 27 H 0.261 0.739 28 H 0.331 0.669 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.163 0.837 34 H 0.083 0.917 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.736 0.768 17.200 17.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.104 3.896 3 H 0.019 0.981 4 C -0.558 4.558 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.204 1.204 12 N -0.313 5.313 13 C -0.025 4.025 14 H 0.064 0.936 15 C -0.146 4.146 16 C -0.181 4.181 17 C 0.021 3.979 18 H 0.093 0.907 19 O -0.301 6.301 20 C 0.310 3.690 21 F -0.192 7.192 22 F -0.194 7.194 23 C -0.160 4.160 24 H 0.029 0.971 25 H 0.097 0.903 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.149 0.851 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.179 0.821 34 H 0.101 0.899 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.121 0.744 17.124 17.422 hybrid contribution 0.849 -0.125 -0.880 1.229 sum 3.970 0.619 16.243 16.733 Atomic orbital electron populations 1.21785 0.97871 0.99281 0.99553 1.19160 0.92719 0.92169 0.85514 0.98148 1.21251 1.31442 1.12597 0.90557 0.92324 1.24917 0.95032 0.95006 0.99021 1.69893 1.36535 1.22912 1.23525 0.86589 0.79033 0.79805 0.82114 1.20214 1.21318 1.20356 1.60831 1.31849 1.32658 1.05964 1.22323 0.93335 0.95375 0.91464 0.93589 1.22565 0.97794 1.01867 0.92390 1.22912 0.95139 1.01256 0.98778 1.23040 0.89818 0.91638 0.93409 0.90724 1.88486 1.65866 1.59960 1.15769 1.23131 0.80944 0.81797 0.83132 1.93071 1.42524 1.94723 1.88842 1.93051 1.90447 1.43023 1.92847 1.22446 0.99505 1.02288 0.91745 0.97133 0.90316 0.95135 0.92900 0.85060 0.91177 0.90587 0.91426 0.90658 0.82083 0.89877 0.90692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 9.01 37.16 0.33 -2.81 16 2 C 0.21 5.35 2.60 -68.87 -0.18 5.17 16 3 H 0.00 0.03 7.44 -51.93 -0.39 -0.36 16 4 C -0.52 -14.25 8.60 -34.44 -0.30 -14.55 16 5 H 0.06 1.58 7.62 -52.49 -0.40 1.18 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.50 11.31 55.43 0.63 -24.87 16 8 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.68 -14.34 6.15 -99.22 -0.61 -14.95 16 13 C 0.09 1.53 3.17 -66.06 -0.21 1.32 16 14 H 0.05 0.90 7.44 -51.93 -0.39 0.51 16 15 C -0.11 -1.75 5.63 -24.74 -0.14 -1.89 16 16 C -0.14 -1.95 5.93 -25.07 -0.15 -2.10 16 17 C 0.08 1.04 3.11 -25.61 -0.08 0.96 16 18 H 0.07 0.96 7.24 -51.93 -0.38 0.59 16 19 O -0.38 -4.73 10.19 -35.23 -0.36 -5.09 16 20 C 0.40 3.87 6.26 101.05 0.63 4.50 16 21 F -0.21 -2.32 16.61 2.25 0.04 -2.28 16 22 F -0.21 -2.34 16.66 2.25 0.04 -2.30 16 23 C -0.12 -1.80 6.08 -25.61 -0.16 -1.96 16 24 H 0.01 0.22 5.74 -51.93 -0.30 -0.08 16 25 H 0.08 2.14 6.06 -51.93 -0.31 1.82 16 26 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.33 6.79 7.82 -39.30 -0.31 6.48 16 29 H 0.07 1.19 6.62 -51.93 -0.34 0.85 16 30 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 33 H 0.16 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 1.19 7.93 -51.93 -0.41 0.78 16 35 H 0.07 1.09 7.96 -51.93 -0.41 0.68 16 LS Contribution 288.30 15.07 4.34 4.34 Total: -1.00 -29.17 288.30 -6.16 -35.33 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -4.88 Total: 3.28 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: -0.34 Total: -9.72 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.02 Total: -39.83 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: -0.36 Total: -5.09 kcal Atomic # 9 Polarization: -4.66 SS G_CDS: 0.07 Total: -4.58 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.17 -6.16 -35.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389991146.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.821 kcal (2) G-P(sol) polarization free energy of solvation -29.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds