Wall clock time and date at job start Mon Mar 30 2020 06:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 N 1.46895 * 109.47363 * 120.00320 * 2 1 3 13 13 C 1.46904 * 110.99921 * 275.00164 * 12 2 1 14 14 H 1.09005 * 110.43072 * 327.53741 * 13 12 2 15 15 C 1.54886 * 110.48786 * 90.22000 * 13 12 2 16 16 C 1.54891 * 102.74896 * 156.62272 * 15 13 12 17 17 C 1.54261 * 104.19510 * 322.05727 * 16 15 13 18 18 H 1.08998 * 110.03442 * 264.32350 * 17 16 15 19 19 O 1.42898 * 110.03369 * 142.89231 * 17 16 15 20 20 C 1.42903 * 113.99973 * 92.83326 * 19 17 16 21 21 F 1.39900 * 109.46943 * 300.00380 * 20 19 17 22 22 F 1.39900 * 109.47171 * 60.00287 * 20 19 17 23 23 C 1.53878 * 106.59836 * 23.61223 * 17 16 15 24 24 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 25 25 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 26 26 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 27 27 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 28 28 H 1.00890 * 111.00763 * 151.04479 * 12 2 1 29 29 H 1.09005 * 110.75861 * 274.93895 * 15 13 12 30 30 H 1.08998 * 110.75646 * 38.30765 * 15 13 12 31 31 H 1.08998 * 110.48532 * 203.38021 * 16 15 13 32 32 H 1.08998 * 110.59915 * 80.79259 * 16 15 13 33 33 H 1.08995 * 109.47203 * 179.97438 * 20 19 17 34 34 H 1.09006 * 110.03051 * 240.71753 * 23 17 16 35 35 H 1.08993 * 110.07306 * 119.30629 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 1.8153 -2.5276 -4.0022 10 1 1.8119 -0.4304 -5.2204 11 1 3.7959 -1.1284 -4.0138 12 7 2.0197 -0.6925 1.1993 13 6 2.0825 0.2225 2.3469 14 1 2.3201 1.2333 2.0150 15 6 0.7449 0.2056 3.1276 16 6 1.1668 0.6841 4.5390 17 6 2.5430 0.0253 4.7661 18 1 2.4249 -0.9033 5.3245 19 8 3.4021 0.9188 5.4772 20 6 3.3759 0.7449 6.8953 21 9 2.0764 0.9584 7.3674 22 9 3.7797 -0.5563 7.2131 23 6 3.1253 -0.2681 3.3723 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7011 1.1560 -3.4844 28 1 2.9173 -1.1205 1.0287 29 1 0.0293 0.8973 2.6830 30 1 0.3342 -0.8033 3.1685 31 1 0.4519 0.3420 5.2873 32 1 1.2547 1.7702 4.5653 33 1 4.0542 1.4594 7.3616 34 1 3.2896 -1.3392 3.2543 35 1 4.0633 0.2704 3.2378 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389991146.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:34 Heat of formation + Delta-G solvation = -189.494679 kcal Electronic energy + Delta-G solvation = -18728.418699 eV Core-core repulsion = 15395.262054 eV Total energy + Delta-G solvation = -3333.156645 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.128 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.98731 -48.10385 -40.19166 -38.04902 -36.02445 -33.80261 -30.68596 -29.43255 -27.63021 -26.89749 -25.85221 -22.01233 -21.75384 -21.19170 -19.48121 -18.63649 -18.57437 -18.37721 -16.92063 -16.44911 -16.26836 -15.58565 -15.44675 -14.98698 -14.71046 -14.53315 -14.43942 -14.26461 -13.86904 -13.53584 -13.19535 -13.07930 -12.77519 -12.71806 -12.49556 -12.34987 -12.14549 -12.00647 -11.87619 -11.65730 -11.48819 -11.26559 -10.81241 -10.53748 -9.08292 -8.12318 -6.26936 1.42963 1.44902 1.52486 2.11390 2.42087 2.77772 3.15739 3.46928 3.47561 3.62031 3.81576 3.93404 4.12963 4.28315 4.40594 4.47166 4.63899 4.68473 4.84475 4.88844 4.94517 5.01304 5.09906 5.25936 5.30289 5.31173 5.52885 5.68598 5.71126 5.89723 6.24340 6.49304 6.79908 7.01934 7.43636 8.92936 Molecular weight = 249.13amu Principal moments of inertia in cm(-1) A = 0.053298 B = 0.004283 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.222573 B = 6535.399908 C = 6839.187967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.217 3.783 3 H -0.034 1.034 4 C -0.540 4.540 5 H 0.060 0.940 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.963 3.037 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.270 1.270 12 N -0.677 5.677 13 C 0.080 3.920 14 H 0.024 0.976 15 C -0.105 4.105 16 C -0.133 4.133 17 C 0.083 3.917 18 H 0.084 0.916 19 O -0.390 6.390 20 C 0.397 3.603 21 F -0.218 7.218 22 F -0.220 7.220 23 C -0.114 4.114 24 H 0.029 0.971 25 H 0.053 0.947 26 H 0.025 0.975 27 H 0.262 0.738 28 H 0.334 0.666 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.211 0.789 34 H 0.090 0.910 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.480 0.151 18.360 18.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.108 3.892 3 H -0.017 1.017 4 C -0.579 4.579 5 H 0.078 0.922 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.788 3.212 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.195 1.195 12 N -0.308 5.308 13 C -0.030 4.030 14 H 0.042 0.958 15 C -0.143 4.143 16 C -0.171 4.171 17 C 0.026 3.974 18 H 0.102 0.898 19 O -0.312 6.312 20 C 0.307 3.693 21 F -0.200 7.200 22 F -0.202 7.202 23 C -0.152 4.152 24 H 0.048 0.952 25 H 0.071 0.929 26 H 0.045 0.955 27 H 0.071 0.929 28 H 0.152 0.848 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.227 0.773 34 H 0.108 0.892 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.872 0.122 18.311 18.716 hybrid contribution 0.622 0.102 -1.177 1.335 sum 4.494 0.224 17.134 17.715 Atomic orbital electron populations 1.21606 0.97659 0.98758 0.99254 1.18951 0.92879 0.90438 0.86883 1.01664 1.21605 1.31708 1.12839 0.91700 0.92170 1.25747 0.95133 0.95688 1.02089 1.70030 1.37403 1.24142 1.24190 0.85536 0.78723 0.78646 0.78246 1.19629 1.20993 1.19545 1.60767 1.32019 1.32795 1.05228 1.22392 0.95743 0.93724 0.91170 0.95760 1.22480 0.96497 1.01539 0.93798 1.22830 0.95764 1.01256 0.97217 1.22862 0.89499 0.92244 0.92832 0.89814 1.88470 1.65495 1.59690 1.17528 1.23884 0.81315 0.82319 0.81817 1.93054 1.43465 1.94736 1.88762 1.93035 1.90463 1.43975 1.92752 1.22330 0.98487 1.02576 0.91778 0.95175 0.92870 0.95532 0.92877 0.84829 0.92453 0.90757 0.89856 0.90669 0.77287 0.89182 0.90499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.78 9.01 71.98 0.65 -5.13 16 2 C 0.22 11.21 2.60 44.17 0.12 11.32 16 3 H -0.03 -1.97 7.44 -2.38 -0.02 -1.99 16 4 C -0.54 -29.91 8.60 25.60 0.22 -29.69 16 5 H 0.06 3.23 7.62 -2.91 -0.02 3.21 16 6 C 0.01 0.70 5.30 84.66 0.45 1.15 16 7 N -0.92 -53.48 11.31 21.45 0.24 -53.24 16 8 Si 0.96 43.62 29.54 68.60 2.03 45.64 16 9 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 12 N -0.68 -28.64 6.15 -467.82 -2.88 -31.52 16 13 C 0.08 2.86 3.17 45.99 0.15 3.00 16 14 H 0.02 0.98 7.44 -2.38 -0.02 0.96 16 15 C -0.10 -3.33 5.63 31.88 0.18 -3.15 16 16 C -0.13 -3.40 5.93 31.67 0.19 -3.21 16 17 C 0.08 2.05 3.11 31.32 0.10 2.14 16 18 H 0.08 1.95 7.24 -2.39 -0.02 1.93 16 19 O -0.39 -8.76 10.19 -148.98 -1.52 -10.28 16 20 C 0.40 6.46 6.26 113.37 0.71 7.17 16 21 F -0.22 -4.25 16.61 44.97 0.75 -3.50 16 22 F -0.22 -4.30 16.66 44.97 0.75 -3.55 16 23 C -0.11 -3.22 6.08 31.32 0.19 -3.03 16 24 H 0.03 1.35 5.74 -2.39 -0.01 1.33 16 25 H 0.05 2.95 6.06 -2.39 -0.01 2.94 16 26 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 27 H 0.26 14.51 8.31 -92.70 -0.77 13.74 16 28 H 0.33 13.67 7.82 -89.70 -0.70 12.97 16 29 H 0.06 1.94 6.62 -2.38 -0.02 1.93 16 30 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.07 1.94 8.08 -2.39 -0.02 1.92 16 33 H 0.21 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.09 2.43 7.93 -2.38 -0.02 2.41 16 35 H 0.08 2.14 7.96 -2.39 -0.02 2.13 16 Total: -1.00 -62.58 288.30 2.71 -59.87 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.40 Total: 16.01 kcal Atomic # 6 Polarization: -22.37 SS G_CDS: 2.94 Total: -19.43 kcal Atomic # 7 Polarization: -82.13 SS G_CDS: -2.64 Total: -84.76 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -1.52 Total: -10.28 kcal Atomic # 9 Polarization: -8.54 SS G_CDS: 1.50 Total: -7.04 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -62.58 2.71 -59.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389991146.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.622 kcal (2) G-P(sol) polarization free energy of solvation -62.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds