Wall clock time and date at job start Mon Mar 30 2020 06:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46760 * 2 1 4 4 C 1.50701 * 109.46848 * 119.99807 * 2 1 3 5 5 H 1.07997 * 119.99702 * 120.00233 * 4 2 1 6 6 C 1.37875 * 120.00238 * 299.99991 * 4 2 1 7 7 N 1.31518 * 120.00299 * 180.02562 * 6 4 2 8 8 Si 1.86803 * 120.00151 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.46618 * 89.99974 * 8 6 4 10 10 H 1.48497 * 109.47480 * 210.00091 * 8 6 4 11 11 H 1.48501 * 109.46860 * 330.00517 * 8 6 4 12 12 N 1.46500 * 109.47161 * 239.99768 * 2 1 3 13 13 C 1.39667 * 119.99491 * 85.00126 * 12 2 1 14 14 C 1.38951 * 120.06625 * 359.97438 * 13 12 2 15 15 C 1.38096 * 119.97361 * 179.74969 * 14 13 12 16 16 C 1.38274 * 120.09805 * 0.54572 * 15 14 13 17 17 C 1.50699 * 119.93306 * 179.72755 * 16 15 14 18 18 C 1.53000 * 117.50321 * 59.72856 * 17 16 15 19 19 C 1.52997 * 117.50247 * 351.09956 * 17 16 15 20 20 C 1.38490 * 120.12203 * 359.45144 * 16 15 14 21 21 F 1.35106 * 119.98527 * 180.25300 * 20 16 15 22 22 C 1.38339 * 120.02759 * 0.27406 * 20 16 15 23 23 H 1.09003 * 109.47276 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46973 * 300.00214 * 1 2 3 25 25 H 1.08997 * 109.47217 * 59.99730 * 1 2 3 26 26 H 0.96993 * 119.99866 * 180.02562 * 7 6 4 27 27 H 0.96992 * 119.99788 * 265.00070 * 12 2 1 28 28 H 1.07999 * 120.01079 * 0.02562 * 14 13 12 29 29 H 1.08005 * 119.94866 * 180.26816 * 15 14 13 30 30 H 1.09002 * 115.55636 * 205.41255 * 17 16 15 31 31 H 1.08990 * 117.49990 * 145.01584 * 18 17 16 32 32 H 1.09004 * 117.49237 * 359.97438 * 18 17 16 33 33 H 1.08999 * 117.49685 * 0.02562 * 19 17 16 34 34 H 1.08999 * 117.52022 * 214.97066 * 19 17 16 35 35 H 1.08005 * 120.05443 * 180.02562 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1379 -0.8590 3.5566 8 14 0.6259 1.2799 2.6542 9 1 -0.8020 0.8745 2.6993 10 1 0.9772 1.9955 3.9071 11 1 0.8492 2.1773 1.4923 12 7 2.0184 -0.6907 -1.1961 13 6 2.1517 0.0062 -2.3992 14 6 1.8212 1.3542 -2.4632 15 6 1.9587 2.0426 -3.6524 16 6 2.4143 1.3897 -4.7829 17 6 2.5571 2.1430 -6.0803 18 6 3.5039 3.3448 -6.0989 19 6 1.9900 3.5628 -6.1390 20 6 2.7450 0.0461 -4.7237 21 9 3.1947 -0.5879 -5.8287 22 6 2.6146 -0.6471 -3.5337 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.9033 -0.5278 4.4375 27 1 2.2490 -1.6317 -1.1525 28 1 1.4610 1.8645 -1.5821 29 1 1.7057 3.0915 -3.7007 30 1 2.4939 1.5380 -6.9848 31 1 4.0635 3.5304 -7.0156 32 1 4.0231 3.5907 -5.1726 33 1 1.5139 3.9521 -5.2390 34 1 1.5537 3.8923 -7.0819 35 1 2.8728 -1.6948 -3.4869 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390426200.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:43 Heat of formation + Delta-G solvation = -9.533726 kcal Electronic energy + Delta-G solvation = -17635.082866 eV Core-core repulsion = 14740.499139 eV Total energy + Delta-G solvation = -2894.583728 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.83673 -40.58243 -38.50657 -36.69252 -34.48600 -32.34601 -31.25091 -29.24685 -27.18097 -24.55702 -24.09823 -23.08117 -22.03662 -21.11462 -19.48075 -18.36097 -17.76583 -16.93321 -16.88076 -16.52331 -16.41163 -15.45765 -15.31249 -15.06919 -14.94174 -14.29450 -14.10084 -13.96857 -13.79765 -13.24865 -13.06748 -12.69501 -12.48030 -12.28065 -12.09165 -11.97764 -11.81331 -11.47276 -11.25572 -11.18517 -10.86801 -10.42051 -9.72114 -8.36988 -8.18421 -6.44181 0.32324 0.54054 1.31659 1.36488 1.46706 2.27532 2.60143 2.67207 2.99443 3.18294 3.47175 3.69324 3.89298 4.06592 4.19548 4.26710 4.38946 4.45040 4.50215 4.51121 4.68018 4.78415 4.85647 4.95623 5.00199 5.08218 5.19390 5.24562 5.33236 5.38058 5.45923 5.49858 5.60869 5.87759 6.08980 6.53422 6.63953 6.97111 7.24104 8.79491 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.033438 B = 0.005313 C = 0.004824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.160019 B = 5269.317940 C = 5803.210503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.248 3.752 3 H 0.039 0.961 4 C -0.538 4.538 5 H 0.041 0.959 6 C 0.021 3.979 7 N -0.942 5.942 8 Si 0.949 3.051 9 H -0.263 1.263 10 H -0.297 1.297 11 H -0.241 1.241 12 N -0.720 5.720 13 C 0.240 3.760 14 C -0.219 4.219 15 C -0.039 4.039 16 C -0.160 4.160 17 C -0.123 4.123 18 C -0.170 4.170 19 C -0.164 4.164 20 C 0.138 3.862 21 F -0.145 7.145 22 C -0.250 4.250 23 H 0.052 0.948 24 H 0.043 0.957 25 H 0.061 0.939 26 H 0.269 0.731 27 H 0.398 0.602 28 H 0.126 0.874 29 H 0.153 0.847 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.112 0.888 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.028 8.980 -17.882 20.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.143 3.857 3 H 0.057 0.943 4 C -0.576 4.576 5 H 0.059 0.941 6 C -0.178 4.178 7 N -0.581 5.581 8 Si 0.774 3.226 9 H -0.189 1.189 10 H -0.224 1.224 11 H -0.165 1.165 12 N -0.344 5.344 13 C 0.132 3.868 14 C -0.242 4.242 15 C -0.057 4.057 16 C -0.163 4.163 17 C -0.141 4.141 18 C -0.207 4.207 19 C -0.201 4.201 20 C 0.118 3.882 21 F -0.124 7.124 22 C -0.274 4.274 23 H 0.071 0.929 24 H 0.061 0.939 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.232 0.768 28 H 0.144 0.856 29 H 0.170 0.830 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.110 0.890 33 H 0.122 0.878 34 H 0.130 0.870 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.075 9.037 -17.534 19.835 hybrid contribution -0.013 -0.643 0.683 0.938 sum -2.088 8.395 -16.851 18.942 Atomic orbital electron populations 1.22470 0.98017 1.01535 1.00018 1.18845 0.90901 0.93410 0.82545 0.94296 1.21310 1.32218 1.13495 0.90586 0.94073 1.25742 0.97003 1.00053 0.95042 1.70017 1.46916 1.42343 0.98784 0.85865 0.79113 0.79702 0.77870 1.18910 1.22443 1.16475 1.45022 1.70244 1.12408 1.06717 1.17819 0.91423 0.91830 0.85721 1.20913 1.10393 0.93113 0.99811 1.20814 0.94686 1.00278 0.89939 1.18982 1.08844 0.91974 0.96513 1.20735 1.07705 0.90672 0.95011 1.23104 0.93298 1.00446 1.03833 1.23158 0.96070 0.96372 1.04452 1.17195 0.98278 0.90629 0.82097 1.91425 1.86801 1.82454 1.51679 1.20454 1.13760 1.01512 0.91679 0.92910 0.93863 0.92052 0.92150 0.76815 0.85600 0.82954 0.87424 0.87333 0.89038 0.87842 0.86950 0.84810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.39 8.91 71.98 0.64 -5.75 16 2 C 0.25 10.82 1.85 44.25 0.08 10.91 16 3 H 0.04 1.73 5.54 -2.39 -0.01 1.71 16 4 C -0.54 -29.02 9.31 25.60 0.24 -28.78 16 5 H 0.04 2.46 7.98 -2.91 -0.02 2.44 16 6 C 0.02 1.13 5.45 84.65 0.46 1.59 16 7 N -0.94 -56.53 13.96 21.45 0.30 -56.23 16 8 Si 0.95 41.95 24.37 68.60 1.67 43.62 16 9 H -0.26 -11.06 6.87 99.48 0.68 -10.37 16 10 H -0.30 -13.21 7.11 99.48 0.71 -12.50 16 11 H -0.24 -9.64 6.53 99.48 0.65 -8.99 16 12 N -0.72 -27.91 5.24 -322.52 -1.69 -29.60 16 13 C 0.24 8.30 6.64 38.21 0.25 8.55 16 14 C -0.22 -6.95 8.85 22.41 0.20 -6.75 16 15 C -0.04 -1.02 9.28 22.24 0.21 -0.81 16 16 C -0.16 -4.30 5.62 -19.80 -0.11 -4.41 16 17 C -0.12 -2.64 5.79 -11.54 -0.07 -2.71 16 18 C -0.17 -2.99 10.16 30.60 0.31 -2.68 16 19 C -0.16 -2.63 9.86 30.60 0.30 -2.33 16 20 C 0.14 4.16 7.24 22.35 0.16 4.33 16 21 F -0.14 -4.31 16.60 44.97 0.75 -3.56 16 22 C -0.25 -8.00 9.87 22.44 0.22 -7.77 16 23 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 24 H 0.04 1.73 3.27 -2.39 -0.01 1.72 16 25 H 0.06 2.09 7.71 -2.39 -0.02 2.07 16 26 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 27 H 0.40 15.10 8.55 -92.71 -0.79 14.31 16 28 H 0.13 4.05 6.11 -2.91 -0.02 4.03 16 29 H 0.15 3.10 6.02 -2.91 -0.02 3.08 16 30 H 0.11 2.30 7.86 -2.39 -0.02 2.28 16 31 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.10 1.56 6.18 -2.39 -0.01 1.54 16 34 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.13 4.00 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -60.22 287.65 4.17 -56.05 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: 0.24 Total: 26.36 kcal Atomic # 6 Polarization: -39.52 SS G_CDS: 2.90 Total: -36.63 kcal Atomic # 7 Polarization: -84.45 SS G_CDS: -1.39 Total: -85.84 kcal Atomic # 9 Polarization: -4.31 SS G_CDS: 0.75 Total: -3.56 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 1.67 Total: 43.62 kcal Total: -60.22 4.17 -56.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390426200.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.513 kcal (2) G-P(sol) polarization free energy of solvation -60.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds