Wall clock time and date at job start Mon Mar 30 2020 06:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47019 * 2 1 4 4 C 1.50709 * 109.47007 * 239.99963 * 2 1 3 5 5 H 1.07994 * 119.99431 * 239.99964 * 4 2 1 6 6 C 1.37873 * 119.99688 * 59.99887 * 4 2 1 7 7 N 1.31513 * 120.00476 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99549 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47234 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.46887 * 120.00420 * 8 6 4 11 11 H 1.48496 * 109.47051 * 239.99869 * 8 6 4 12 12 N 1.46894 * 109.47085 * 120.00227 * 2 1 3 13 13 C 1.46909 * 110.99866 * 275.00043 * 12 2 1 14 14 H 1.09000 * 115.55827 * 350.68575 * 13 12 2 15 15 C 1.53069 * 117.49626 * 136.39987 * 13 12 2 16 16 C 1.53000 * 59.98584 * 107.48335 * 15 13 12 17 17 H 1.09002 * 117.49833 * 107.50105 * 16 15 13 18 18 C 1.50697 * 117.50034 * 252.49893 * 16 15 13 19 19 C 1.38244 * 119.97416 * 8.47523 * 18 16 15 20 20 C 1.38208 * 120.02508 * 179.72676 * 19 18 16 21 21 C 1.38455 * 119.96896 * 0.56881 * 20 19 18 22 22 F 1.35103 * 120.02220 * 179.68571 * 21 20 19 23 23 C 1.38454 * 119.95601 * 359.70312 * 21 20 19 24 24 C 1.38202 * 119.97236 * 359.97438 * 23 21 20 25 25 H 1.09001 * 109.47102 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46947 * 300.00235 * 1 2 3 27 27 H 1.08999 * 109.46937 * 59.99921 * 1 2 3 28 28 H 0.96997 * 119.99996 * 179.97438 * 7 6 4 29 29 H 1.00898 * 111.00502 * 38.95259 * 12 2 1 30 30 H 1.09008 * 117.49334 * 359.97438 * 15 13 12 31 31 H 1.08999 * 117.53397 * 214.95310 * 15 13 12 32 32 H 1.07994 * 119.98919 * 359.97426 * 19 18 16 33 33 H 1.07995 * 120.01155 * 180.25067 * 20 19 18 34 34 H 1.07996 * 120.01867 * 179.97438 * 23 21 20 35 35 H 1.07996 * 119.98876 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3225 -1.1196 -4.0080 9 1 3.1474 -2.2864 -3.6038 10 1 1.1677 -1.5866 -4.8165 11 1 3.1471 -0.1858 -4.8161 12 7 2.0197 -0.6925 1.1994 13 6 2.0824 0.2226 2.3469 14 1 1.9215 1.2760 2.1177 15 6 1.5681 -0.2950 3.6925 16 6 3.0703 -0.1140 3.4657 17 1 3.5593 0.7179 3.9726 18 6 3.9048 -1.3586 3.3059 19 6 3.2908 -2.5919 3.1909 20 6 4.0549 -3.7334 3.0387 21 6 5.4363 -3.6427 3.0132 22 9 6.1844 -4.7586 2.8708 23 6 6.0504 -2.4077 3.1341 24 6 5.2840 -1.2668 3.2796 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.7095 1.1617 -3.4844 29 1 1.4496 -1.4979 1.4100 30 1 1.1829 -1.3142 3.7257 31 1 1.0688 0.4177 4.3489 32 1 2.2135 -2.6629 3.2160 33 1 3.5749 -4.6962 2.9448 34 1 7.1278 -2.3358 3.1148 35 1 5.7628 -0.3034 3.3735 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390504884.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:18 Heat of formation + Delta-G solvation = 2.743396 kcal Electronic energy + Delta-G solvation = -17696.040977 eV Core-core repulsion = 14801.989626 eV Total energy + Delta-G solvation = -2894.051352 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.66366 -39.40792 -37.07749 -34.49151 -31.74300 -30.91575 -29.71991 -27.35674 -25.12954 -23.58018 -22.71256 -21.17835 -20.47373 -19.77876 -17.47430 -16.43001 -16.21727 -15.55626 -15.35897 -14.94220 -14.41122 -14.29668 -13.52418 -13.35252 -13.09630 -12.71550 -12.57367 -12.29858 -12.00518 -11.54123 -11.23684 -11.01693 -10.97759 -10.74253 -10.64004 -10.41943 -10.17791 -10.08092 -9.74732 -8.99343 -8.84794 -8.37893 -8.12735 -7.17546 -6.00398 -4.03210 1.41135 1.49575 3.31212 3.39182 3.45283 3.73478 4.33828 4.42493 4.50494 4.82894 4.91988 5.04739 5.08139 5.25057 5.31841 5.40953 5.50327 5.68400 5.76992 5.94415 6.08626 6.16594 6.26139 6.31951 6.37642 6.52929 6.66671 6.82002 6.84635 7.05290 7.14470 7.31477 7.71220 7.87471 8.24020 8.45661 8.56851 9.04417 9.62325 11.06805 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.019068 B = 0.006538 C = 0.005279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.069648 B = 4281.567350 C = 5302.456063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.213 3.787 3 H 0.036 0.964 4 C -0.494 4.494 5 H 0.063 0.937 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.646 5.646 13 C 0.062 3.938 14 H 0.107 0.893 15 C -0.210 4.210 16 C -0.128 4.128 17 H 0.108 0.892 18 C -0.022 4.022 19 C -0.079 4.079 20 C -0.148 4.148 21 C 0.079 3.921 22 F -0.148 7.148 23 C -0.152 4.152 24 C -0.090 4.090 25 H 0.027 0.973 26 H 0.007 0.993 27 H 0.089 0.911 28 H 0.259 0.741 29 H 0.328 0.672 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.147 -3.661 13.123 14.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.106 3.894 3 H 0.054 0.946 4 C -0.533 4.533 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.274 5.274 13 C -0.051 4.051 14 H 0.125 0.875 15 C -0.249 4.249 16 C -0.148 4.148 17 H 0.126 0.874 18 C -0.023 4.023 19 C -0.097 4.097 20 C -0.167 4.167 21 C 0.060 3.940 22 F -0.127 7.127 23 C -0.170 4.170 24 C -0.108 4.108 25 H 0.046 0.954 26 H 0.026 0.974 27 H 0.107 0.893 28 H 0.069 0.931 29 H 0.147 0.853 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.145 0.855 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.762 -3.524 12.759 14.067 hybrid contribution -0.510 -0.507 -0.756 1.043 sum 4.252 -4.030 12.002 13.356 Atomic orbital electron populations 1.22462 1.00494 0.99218 1.00626 1.19271 0.89677 0.94380 0.86121 0.94641 1.21173 1.30107 1.12454 0.89537 0.91908 1.24927 0.95310 0.95194 0.99024 1.69886 1.37413 1.23197 1.23261 0.86474 0.78537 0.79730 0.82886 1.19714 1.21201 1.21124 1.60448 1.56755 1.07931 1.02222 1.22634 0.98741 0.97531 0.86183 0.87495 1.23588 0.95645 1.02582 1.03052 1.21396 0.90467 0.96995 1.05950 0.87435 1.18999 0.92922 0.93315 0.97027 1.20780 0.99870 0.91126 0.97879 1.21035 0.91868 1.00072 1.03703 1.17649 0.89242 0.82463 1.04665 1.91455 1.76627 1.51068 1.93573 1.20996 1.00515 0.91347 1.04181 1.20727 0.93035 0.97733 0.99306 0.95395 0.97435 0.89267 0.93118 0.85270 0.88743 0.88986 0.85512 0.85281 0.85335 0.85482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.92 8.94 37.16 0.33 -3.59 16 2 C 0.21 5.17 2.53 -68.86 -0.17 5.00 16 3 H 0.04 0.95 7.57 -51.93 -0.39 0.56 16 4 C -0.49 -13.53 8.84 -34.44 -0.30 -13.83 16 5 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 6 C 0.06 1.54 5.30 -17.82 -0.09 1.45 16 7 N -0.90 -25.44 11.32 55.43 0.63 -24.81 16 8 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 9 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 N -0.65 -13.00 5.37 -100.91 -0.54 -13.55 16 13 C 0.06 1.03 6.04 -67.67 -0.41 0.62 16 14 H 0.11 1.84 7.60 -51.93 -0.39 1.44 16 15 C -0.21 -2.78 9.56 -26.70 -0.26 -3.04 16 16 C -0.13 -1.81 6.04 -91.77 -0.55 -2.36 16 17 H 0.11 1.33 8.14 -51.93 -0.42 0.90 16 18 C -0.02 -0.33 5.25 -104.62 -0.55 -0.88 16 19 C -0.08 -1.14 8.43 -39.59 -0.33 -1.47 16 20 C -0.15 -2.12 10.03 -39.51 -0.40 -2.51 16 21 C 0.08 1.17 7.30 -39.42 -0.29 0.88 16 22 F -0.15 -2.24 17.27 2.25 0.04 -2.20 16 23 C -0.15 -2.10 10.03 -39.51 -0.40 -2.49 16 24 C -0.09 -1.25 9.73 -39.59 -0.39 -1.64 16 25 H 0.03 0.62 8.13 -51.93 -0.42 0.20 16 26 H 0.01 0.14 8.07 -51.93 -0.42 -0.28 16 27 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 28 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.33 6.30 7.61 -39.29 -0.30 6.00 16 30 H 0.09 1.20 6.12 -51.92 -0.32 0.88 16 31 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.13 1.68 5.64 -52.49 -0.30 1.39 16 33 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 35 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 296.23 15.07 4.46 4.46 Total: -1.00 -28.54 296.23 -8.76 -37.30 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -4.52 Total: 6.09 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: -3.81 Total: -23.87 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.09 Total: -38.35 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.04 Total: -2.20 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.54 -8.76 -37.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390504884.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.043 kcal (2) G-P(sol) polarization free energy of solvation -28.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds