Wall clock time and date at job start Mon Mar 30 2020 06:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47019 * 2 1 4 4 C 1.50709 * 109.47007 * 239.99963 * 2 1 3 5 5 H 1.07994 * 119.99431 * 239.99964 * 4 2 1 6 6 C 1.37873 * 119.99688 * 59.99887 * 4 2 1 7 7 N 1.31513 * 120.00476 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99549 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47234 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.46887 * 120.00420 * 8 6 4 11 11 H 1.48496 * 109.47051 * 239.99869 * 8 6 4 12 12 N 1.46894 * 109.47085 * 120.00227 * 2 1 3 13 13 C 1.46909 * 110.99866 * 275.00043 * 12 2 1 14 14 H 1.09000 * 115.55827 * 350.68575 * 13 12 2 15 15 C 1.53069 * 117.49626 * 136.39987 * 13 12 2 16 16 C 1.53000 * 59.98584 * 107.48335 * 15 13 12 17 17 H 1.09002 * 117.49833 * 107.50105 * 16 15 13 18 18 C 1.50697 * 117.50034 * 252.49893 * 16 15 13 19 19 C 1.38244 * 119.97416 * 8.47523 * 18 16 15 20 20 C 1.38208 * 120.02508 * 179.72676 * 19 18 16 21 21 C 1.38455 * 119.96896 * 0.56881 * 20 19 18 22 22 F 1.35103 * 120.02220 * 179.68571 * 21 20 19 23 23 C 1.38454 * 119.95601 * 359.70312 * 21 20 19 24 24 C 1.38202 * 119.97236 * 359.97438 * 23 21 20 25 25 H 1.09001 * 109.47102 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46947 * 300.00235 * 1 2 3 27 27 H 1.08999 * 109.46937 * 59.99921 * 1 2 3 28 28 H 0.96997 * 119.99996 * 179.97438 * 7 6 4 29 29 H 1.00898 * 111.00502 * 38.95259 * 12 2 1 30 30 H 1.09008 * 117.49334 * 359.97438 * 15 13 12 31 31 H 1.08999 * 117.53397 * 214.95310 * 15 13 12 32 32 H 1.07994 * 119.98919 * 359.97426 * 19 18 16 33 33 H 1.07995 * 120.01155 * 180.25067 * 20 19 18 34 34 H 1.07996 * 120.01867 * 179.97438 * 23 21 20 35 35 H 1.07996 * 119.98876 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3225 -1.1196 -4.0080 9 1 3.1474 -2.2864 -3.6038 10 1 1.1677 -1.5866 -4.8165 11 1 3.1471 -0.1858 -4.8161 12 7 2.0197 -0.6925 1.1994 13 6 2.0824 0.2226 2.3469 14 1 1.9215 1.2760 2.1177 15 6 1.5681 -0.2950 3.6925 16 6 3.0703 -0.1140 3.4657 17 1 3.5593 0.7179 3.9726 18 6 3.9048 -1.3586 3.3059 19 6 3.2908 -2.5919 3.1909 20 6 4.0549 -3.7334 3.0387 21 6 5.4363 -3.6427 3.0132 22 9 6.1844 -4.7586 2.8708 23 6 6.0504 -2.4077 3.1341 24 6 5.2840 -1.2668 3.2796 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.7095 1.1617 -3.4844 29 1 1.4496 -1.4979 1.4100 30 1 1.1829 -1.3142 3.7257 31 1 1.0688 0.4177 4.3489 32 1 2.2135 -2.6629 3.2160 33 1 3.5749 -4.6962 2.9448 34 1 7.1278 -2.3358 3.1148 35 1 5.7628 -0.3034 3.3735 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390504884.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:17 Heat of formation + Delta-G solvation = -12.264477 kcal Electronic energy + Delta-G solvation = -17696.691767 eV Core-core repulsion = 14801.989626 eV Total energy + Delta-G solvation = -2894.702142 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.80886 -40.54577 -38.38612 -36.21474 -33.63440 -31.99057 -30.90638 -29.05890 -27.19791 -24.67834 -23.81193 -22.56441 -22.14351 -21.00057 -18.60414 -18.34589 -17.44332 -16.82260 -16.70238 -16.50542 -15.85123 -15.58095 -14.83801 -14.65633 -14.41197 -14.37091 -14.00300 -13.61773 -13.40009 -13.09520 -12.89099 -12.77540 -12.45348 -12.28241 -12.14724 -12.00432 -11.80701 -11.69384 -11.12711 -10.90646 -10.48048 -9.92524 -9.32444 -8.67141 -8.09766 -6.19609 0.28742 0.41965 1.39765 1.42487 1.54111 2.43301 2.61486 3.18209 3.20219 3.40684 3.52471 3.81189 3.92127 4.04630 4.13698 4.32842 4.40484 4.47018 4.63700 4.78264 4.81725 4.92590 4.98940 5.09057 5.11371 5.16817 5.24851 5.29680 5.43402 5.47142 5.71360 5.75307 5.86819 6.06600 6.30358 6.67690 6.85678 6.96590 7.50353 8.95780 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.019068 B = 0.006538 C = 0.005279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.069648 B = 4281.567350 C = 5302.456063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.220 3.780 3 H 0.004 0.996 4 C -0.511 4.511 5 H 0.050 0.950 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.954 3.046 9 H -0.273 1.273 10 H -0.279 1.279 11 H -0.282 1.282 12 N -0.649 5.649 13 C 0.026 3.974 14 H 0.097 0.903 15 C -0.182 4.182 16 C -0.116 4.116 17 H 0.128 0.872 18 C -0.039 4.039 19 C -0.087 4.087 20 C -0.156 4.156 21 C 0.061 3.939 22 F -0.153 7.153 23 C -0.155 4.155 24 C -0.096 4.096 25 H 0.030 0.970 26 H 0.029 0.971 27 H 0.059 0.941 28 H 0.260 0.740 29 H 0.332 0.668 30 H 0.102 0.898 31 H 0.115 0.885 32 H 0.136 0.864 33 H 0.143 0.857 34 H 0.148 0.852 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.376 -4.001 14.157 15.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.112 3.888 3 H 0.022 0.978 4 C -0.550 4.550 5 H 0.068 0.932 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.780 3.220 9 H -0.197 1.197 10 H -0.205 1.205 11 H -0.208 1.208 12 N -0.277 5.277 13 C -0.085 4.085 14 H 0.114 0.886 15 C -0.221 4.221 16 C -0.135 4.135 17 H 0.146 0.854 18 C -0.039 4.039 19 C -0.105 4.105 20 C -0.175 4.175 21 C 0.042 3.958 22 F -0.132 7.132 23 C -0.174 4.174 24 C -0.114 4.114 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.151 0.849 30 H 0.120 0.880 31 H 0.134 0.866 32 H 0.154 0.846 33 H 0.161 0.839 34 H 0.166 0.834 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.995 -3.865 13.817 15.192 hybrid contribution -0.557 -0.395 -1.015 1.223 sum 4.438 -4.260 12.802 14.203 Atomic orbital electron populations 1.22254 0.99766 0.99181 1.00201 1.18964 0.90066 0.92609 0.87188 0.97771 1.21455 1.30063 1.12252 0.91209 0.93207 1.25627 0.95548 0.95874 1.01636 1.69999 1.38139 1.24169 1.23837 0.85570 0.78104 0.78617 0.79699 1.19721 1.20509 1.20800 1.60294 1.56639 1.08395 1.02359 1.22596 1.02901 0.96536 0.86514 0.88561 1.23653 0.95217 1.03307 0.99896 1.21474 0.91066 0.97304 1.03681 0.85385 1.19236 0.93544 0.93663 0.97502 1.20957 1.00455 0.91182 0.97868 1.21263 0.91915 1.00861 1.03475 1.17912 0.89655 0.82790 1.05430 1.91440 1.76731 1.51331 1.93696 1.21268 1.01693 0.90957 1.03441 1.21024 0.92969 0.98668 0.98761 0.95087 0.95168 0.92224 0.93041 0.84896 0.87968 0.86646 0.84597 0.83922 0.83408 0.83544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.18 8.94 71.98 0.64 -6.54 16 2 C 0.22 10.82 2.53 44.17 0.11 10.93 16 3 H 0.00 0.24 7.57 -2.39 -0.02 0.22 16 4 C -0.51 -28.29 8.84 25.60 0.23 -28.07 16 5 H 0.05 2.83 7.81 -2.91 -0.02 2.80 16 6 C 0.01 0.62 5.30 84.65 0.45 1.07 16 7 N -0.92 -52.78 11.32 21.45 0.24 -52.53 16 8 Si 0.95 44.41 29.54 68.60 2.03 46.43 16 9 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 12 N -0.65 -25.82 5.37 -473.17 -2.54 -28.36 16 13 C 0.03 0.84 6.04 44.94 0.27 1.11 16 14 H 0.10 3.27 7.60 -2.39 -0.02 3.25 16 15 C -0.18 -4.30 9.56 30.62 0.29 -4.00 16 16 C -0.12 -2.99 6.04 -11.54 -0.07 -3.06 16 17 H 0.13 2.76 8.14 -2.39 -0.02 2.74 16 18 C -0.04 -1.08 5.25 -19.86 -0.10 -1.18 16 19 C -0.09 -2.37 8.43 22.26 0.19 -2.18 16 20 C -0.16 -4.29 10.03 22.31 0.22 -4.07 16 21 C 0.06 1.75 7.30 22.37 0.16 1.91 16 22 F -0.15 -4.48 17.27 44.97 0.78 -3.70 16 23 C -0.15 -4.04 10.03 22.31 0.22 -3.82 16 24 C -0.10 -2.50 9.73 22.26 0.22 -2.28 16 25 H 0.03 1.37 8.13 -2.39 -0.02 1.35 16 26 H 0.03 1.21 8.07 -2.39 -0.02 1.20 16 27 H 0.06 3.14 6.07 -2.39 -0.01 3.12 16 28 H 0.26 14.21 8.31 -92.71 -0.77 13.43 16 29 H 0.33 12.45 7.61 -89.70 -0.68 11.77 16 30 H 0.10 2.28 6.12 -2.38 -0.01 2.27 16 31 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.14 3.36 5.64 -2.91 -0.02 3.34 16 33 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 34 H 0.15 3.16 8.06 -2.91 -0.02 3.13 16 35 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -60.84 296.23 3.76 -57.08 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 0.42 Total: 21.25 kcal Atomic # 6 Polarization: -43.01 SS G_CDS: 2.84 Total: -40.17 kcal Atomic # 7 Polarization: -78.60 SS G_CDS: -2.30 Total: -80.89 kcal Atomic # 9 Polarization: -4.48 SS G_CDS: 0.78 Total: -3.70 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -60.84 3.76 -57.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390504884.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.817 kcal (2) G-P(sol) polarization free energy of solvation -60.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds