Wall clock time and date at job start Mon Mar 30 2020 06:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47199 * 2 1 4 4 C 1.50701 * 109.47035 * 240.00189 * 2 1 3 5 5 H 1.08003 * 119.99638 * 240.00048 * 4 2 1 6 6 C 1.37872 * 119.99954 * 60.00256 * 4 2 1 7 7 N 1.31513 * 120.00471 * 359.97438 * 6 4 2 8 8 Si 1.86810 * 119.99820 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46966 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47249 * 119.99866 * 8 6 4 11 11 H 1.48502 * 109.46761 * 239.99793 * 8 6 4 12 12 N 1.46896 * 109.47177 * 120.00026 * 2 1 3 13 13 C 1.46900 * 111.00072 * 274.99903 * 12 2 1 14 14 H 1.08999 * 115.55158 * 9.33091 * 13 12 2 15 15 C 1.52997 * 117.49821 * 223.61701 * 13 12 2 16 16 C 1.53000 * 60.00347 * 252.51101 * 15 13 12 17 17 H 1.08990 * 117.49990 * 252.50929 * 16 15 13 18 18 C 1.50697 * 117.49504 * 107.48912 * 16 15 13 19 19 C 1.38246 * 119.97911 * 351.10558 * 18 16 15 20 20 C 1.38191 * 120.02862 * 179.72522 * 19 18 16 21 21 C 1.38455 * 119.97286 * 0.52678 * 20 19 18 22 22 F 1.35107 * 120.02661 * 179.72393 * 21 20 19 23 23 C 1.38458 * 119.95089 * 359.74709 * 21 20 19 24 24 C 1.38194 * 119.97317 * 0.02562 * 23 21 20 25 25 H 1.08997 * 109.47199 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47084 * 300.00308 * 1 2 3 27 27 H 1.09003 * 109.47082 * 59.99575 * 1 2 3 28 28 H 0.97002 * 120.00539 * 180.02562 * 7 6 4 29 29 H 1.00907 * 110.99974 * 38.95229 * 12 2 1 30 30 H 1.09002 * 117.49910 * 145.02241 * 15 13 12 31 31 H 1.09002 * 117.49884 * 0.02562 * 15 13 12 32 32 H 1.08000 * 119.98339 * 359.97438 * 19 18 16 33 33 H 1.08006 * 120.01689 * 180.25700 * 20 19 18 34 34 H 1.08003 * 120.01502 * 179.97438 * 23 21 20 35 35 H 1.08002 * 119.98873 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8298 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 3.1464 -2.2869 -3.6038 10 1 1.1661 -1.5866 -4.8161 11 1 3.1466 -0.1873 -4.8165 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2226 2.3468 14 1 1.6223 1.1990 2.1953 15 6 3.3267 0.1577 3.2349 16 6 1.9929 -0.3911 3.7456 17 1 1.4742 0.1817 4.5142 18 6 1.8471 -1.8880 3.8406 19 6 2.8189 -2.7121 3.3043 20 6 2.6890 -4.0849 3.3959 21 6 1.5797 -4.6349 4.0154 22 9 1.4489 -5.9769 4.1006 23 6 0.6042 -3.8087 4.5472 24 6 0.7385 -2.4361 4.4586 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.7082 1.1610 -3.4844 29 1 1.4495 -1.4979 1.4100 30 1 3.6854 1.0916 3.6676 31 1 4.0988 -0.5637 2.9674 32 1 3.6819 -2.2829 2.8171 33 1 3.4503 -4.7285 2.9805 34 1 -0.2618 -4.2366 5.0304 35 1 -0.0224 -1.7914 4.8730 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390504887.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:21 Heat of formation + Delta-G solvation = 1.872997 kcal Electronic energy + Delta-G solvation = -17704.491351 eV Core-core repulsion = 14810.402256 eV Total energy + Delta-G solvation = -2894.089095 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.77967 -39.53971 -37.03848 -34.49704 -31.72119 -31.03344 -29.84211 -27.35812 -25.13160 -23.63648 -22.83401 -21.14012 -20.24634 -19.85718 -17.58442 -16.45742 -16.29662 -15.67288 -15.48017 -14.93852 -14.50932 -14.28676 -13.56084 -13.44557 -13.16549 -12.85113 -12.58887 -12.15839 -12.08280 -11.47562 -11.35290 -10.98170 -10.96320 -10.75323 -10.64661 -10.25389 -10.17878 -10.11133 -9.79563 -8.98207 -8.94375 -8.38661 -8.24114 -7.22368 -5.99691 -4.02682 1.23721 1.36651 3.31343 3.39153 3.44437 3.61326 4.35550 4.38918 4.42409 4.71480 4.89140 4.96823 5.01655 5.22670 5.32439 5.42374 5.43655 5.59817 5.86619 5.97344 6.09017 6.11246 6.19384 6.23637 6.42625 6.46588 6.68316 6.74429 6.83530 7.01573 7.08209 7.34686 7.72926 7.88104 8.25977 8.48578 8.58865 9.04489 9.62693 11.07546 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.021908 B = 0.005899 C = 0.005181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.737612 B = 4745.472617 C = 5403.128549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.212 3.788 3 H 0.036 0.964 4 C -0.494 4.494 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.897 5.897 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.651 5.651 13 C 0.053 3.947 14 H 0.096 0.904 15 C -0.170 4.170 16 C -0.148 4.148 17 H 0.107 0.893 18 C -0.050 4.050 19 C -0.071 4.071 20 C -0.150 4.150 21 C 0.085 3.915 22 F -0.146 7.146 23 C -0.156 4.156 24 C -0.090 4.090 25 H 0.027 0.973 26 H 0.005 0.995 27 H 0.089 0.911 28 H 0.259 0.741 29 H 0.331 0.669 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.141 0.859 33 H 0.133 0.867 34 H 0.130 0.870 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.865 -4.839 14.076 14.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.104 3.896 3 H 0.054 0.946 4 C -0.533 4.533 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.537 5.537 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.281 5.281 13 C -0.059 4.059 14 H 0.114 0.886 15 C -0.208 4.208 16 C -0.168 4.168 17 H 0.125 0.875 18 C -0.050 4.050 19 C -0.089 4.089 20 C -0.169 4.169 21 C 0.066 3.934 22 F -0.125 7.125 23 C -0.175 4.175 24 C -0.108 4.108 25 H 0.046 0.954 26 H 0.024 0.976 27 H 0.107 0.893 28 H 0.069 0.931 29 H 0.150 0.850 30 H 0.109 0.891 31 H 0.118 0.882 32 H 0.159 0.841 33 H 0.151 0.849 34 H 0.148 0.852 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.440 -4.713 13.736 14.593 hybrid contribution -0.803 -0.547 -0.656 1.173 sum 0.636 -5.260 13.080 14.112 Atomic orbital electron populations 1.22455 1.00617 0.99208 1.00517 1.19259 0.89634 0.94448 0.86221 0.94616 1.21162 1.30175 1.12399 0.89541 0.91909 1.24936 0.95327 0.95194 0.99034 1.69887 1.37337 1.23248 1.23251 0.86464 0.78521 0.79674 0.82885 1.19738 1.21213 1.21125 1.60585 1.57191 1.08220 1.02072 1.22592 0.99509 0.97275 0.86508 0.88638 1.23275 0.91508 1.02185 1.03842 1.21444 1.03703 0.91413 1.00201 0.87528 1.19147 0.94293 0.93954 0.97607 1.21064 0.99387 0.91775 0.96694 1.21142 0.97884 0.96268 1.01615 1.17720 0.96900 0.76826 1.01984 1.91470 1.96059 1.30313 1.94658 1.21019 0.99380 0.93843 1.03250 1.20794 0.97358 0.93781 0.98907 0.95423 0.97574 0.89258 0.93118 0.84954 0.89070 0.88194 0.84112 0.84933 0.85185 0.85403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.02 8.94 37.16 0.33 -3.69 16 2 C 0.21 5.22 2.47 -68.87 -0.17 5.05 16 3 H 0.04 0.96 7.73 -51.93 -0.40 0.56 16 4 C -0.49 -13.54 8.84 -34.44 -0.30 -13.84 16 5 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 6 C 0.06 1.53 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -25.51 11.32 55.43 0.63 -24.89 16 8 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 9 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 N -0.65 -13.32 5.83 -100.96 -0.59 -13.91 16 13 C 0.05 0.90 5.93 -67.71 -0.40 0.50 16 14 H 0.10 1.67 7.77 -51.93 -0.40 1.27 16 15 C -0.17 -2.40 9.78 -26.73 -0.26 -2.66 16 16 C -0.15 -2.03 6.04 -91.77 -0.55 -2.59 16 17 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 18 C -0.05 -0.69 4.62 -104.62 -0.48 -1.17 16 19 C -0.07 -1.01 8.22 -39.60 -0.33 -1.33 16 20 C -0.15 -2.04 10.03 -39.52 -0.40 -2.44 16 21 C 0.08 1.16 7.30 -39.42 -0.29 0.88 16 22 F -0.15 -2.06 17.27 2.25 0.04 -2.02 16 23 C -0.16 -1.95 10.03 -39.52 -0.40 -2.35 16 24 C -0.09 -1.14 9.73 -39.59 -0.39 -1.52 16 25 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 26 H 0.01 0.11 8.07 -51.93 -0.42 -0.30 16 27 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 28 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.33 6.72 6.89 -39.29 -0.27 6.45 16 30 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.10 1.44 6.18 -51.93 -0.32 1.11 16 32 H 0.14 2.00 6.03 -52.49 -0.32 1.68 16 33 H 0.13 1.59 8.06 -52.48 -0.42 1.17 16 34 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 35 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 LS Contribution 295.96 15.07 4.46 4.46 Total: -1.00 -28.15 295.96 -8.74 -36.89 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -4.53 Total: 6.75 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: -3.73 Total: -23.73 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.04 Total: -38.80 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.15 -8.74 -36.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390504887.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.762 kcal (2) G-P(sol) polarization free energy of solvation -28.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds