Wall clock time and date at job start Mon Mar 30 2020 07:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99675 * 2 1 4 4 H 1.48505 * 109.47313 * 270.00428 * 3 2 1 5 5 H 1.48500 * 109.47412 * 30.00728 * 3 2 1 6 6 H 1.48508 * 109.46984 * 150.00587 * 3 2 1 7 7 C 1.37870 * 120.00313 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00168 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00239 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47186 * 175.57003 * 9 7 2 11 11 H 1.09004 * 109.46800 * 54.49311 * 10 9 7 12 12 N 1.46900 * 109.47116 * 174.49021 * 10 9 7 13 13 C 1.46901 * 111.00006 * 274.42405 * 12 10 9 14 14 C 1.53001 * 109.47174 * 175.01753 * 13 12 10 15 15 C 1.52997 * 109.47342 * 180.02562 * 14 13 12 16 16 O 1.42892 * 109.47170 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.47417 * 294.49302 * 10 9 7 18 18 C 1.38238 * 119.99673 * 279.73012 * 17 10 9 19 19 C 1.38239 * 119.99478 * 179.81105 * 18 17 10 20 20 C 1.38231 * 120.00408 * 0.38854 * 19 18 17 21 21 C 1.38242 * 119.99695 * 359.86142 * 20 19 18 22 22 C 1.38230 * 119.99974 * 359.95577 * 21 20 19 23 23 H 0.96998 * 119.99757 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46962 * 55.57068 * 9 7 2 25 25 H 1.08998 * 109.47108 * 295.57165 * 9 7 2 26 26 H 1.00900 * 110.99651 * 150.46783 * 12 10 9 27 27 H 1.08997 * 109.47002 * 55.01163 * 13 12 10 28 28 H 1.09010 * 109.46845 * 295.01400 * 13 12 10 29 29 H 1.08998 * 109.46629 * 299.99774 * 14 13 12 30 30 H 1.08999 * 109.47006 * 59.99393 * 14 13 12 31 31 H 1.09010 * 109.46693 * 299.99657 * 15 14 13 32 32 H 1.08997 * 109.46985 * 59.99317 * 15 14 13 33 33 H 0.96700 * 114.00206 * 179.97438 * 16 15 14 34 34 H 1.07991 * 120.00346 * 359.97438 * 18 17 10 35 35 H 1.08007 * 119.99630 * 180.22632 * 19 18 17 36 36 H 1.07999 * 120.00383 * 179.83332 * 20 19 18 37 37 H 1.08000 * 119.99376 * 179.97438 * 21 20 19 38 38 H 1.08002 * 119.99638 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0217 -2.6321 0.1098 11 1 3.5798 -3.2365 -0.6825 12 7 5.4846 -2.6445 -0.0232 13 6 5.8844 -2.6922 -1.4360 14 6 7.4067 -2.5785 -1.5393 15 6 7.8231 -2.6276 -3.0107 16 8 9.2448 -2.5209 -3.1072 17 6 3.6344 -3.2006 1.4506 18 6 4.3794 -2.8920 2.5734 19 6 4.0217 -3.4103 3.8040 20 6 2.9240 -4.2436 3.9105 21 6 2.1821 -4.5563 2.7867 22 6 2.5374 -4.0350 1.5568 23 1 -0.4850 0.8401 0.0004 24 1 3.8753 -0.6131 0.8465 25 1 3.8746 -0.7501 -0.9281 26 1 5.8881 -3.4118 0.4930 27 1 5.4209 -1.8646 -1.9728 28 1 5.5600 -3.6364 -1.8737 29 1 7.7310 -1.6345 -1.1016 30 1 7.8701 -3.4062 -1.0023 31 1 7.4987 -3.5716 -3.4488 32 1 7.3596 -1.7997 -3.5472 33 1 9.5804 -2.5452 -4.0138 34 1 5.2391 -2.2439 2.4897 35 1 4.6016 -3.1663 4.6819 36 1 2.6462 -4.6507 4.8715 37 1 1.3247 -5.2077 2.8699 38 1 1.9575 -4.2791 0.6790 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390768483.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:37 Heat of formation + Delta-G solvation = -37.386263 kcal Electronic energy + Delta-G solvation = -17911.360668 eV Core-core repulsion = 15139.029468 eV Total energy + Delta-G solvation = -2772.331199 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.01771 -37.37006 -36.14490 -33.38210 -32.11969 -30.37885 -29.76194 -28.91372 -25.19774 -23.33085 -22.10362 -21.85351 -21.02775 -19.32321 -17.47296 -16.93010 -16.31283 -15.84539 -15.00393 -14.88531 -14.51145 -13.96968 -13.90670 -13.48686 -13.16104 -12.86587 -12.74519 -12.49671 -12.07453 -11.83458 -11.49823 -11.43485 -11.09746 -10.92773 -10.70810 -10.47261 -10.11207 -10.04890 -9.93169 -9.70541 -9.16072 -8.50495 -8.32835 -8.11600 -7.94210 -6.00889 -3.97981 1.94511 1.98196 3.33634 3.41564 3.48047 3.98210 4.37096 4.49356 4.75597 4.97892 5.21527 5.27396 5.33678 5.39630 5.43467 5.48449 5.55069 5.64780 5.67343 5.83990 6.03132 6.10180 6.17280 6.25570 6.31015 6.44789 6.60419 6.68742 6.96289 7.02658 7.11123 7.20990 7.29795 7.48372 7.58180 7.63519 7.82567 7.88010 8.55606 9.03242 9.62014 11.12299 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.012671 B = 0.007704 C = 0.005297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.205816 B = 3633.416094 C = 5284.315506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.874 3.126 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.263 1.263 7 C -0.515 4.515 8 H 0.074 0.926 9 C 0.006 3.994 10 C 0.136 3.864 11 H 0.046 0.954 12 N -0.686 5.686 13 C 0.063 3.937 14 C -0.116 4.116 15 C 0.076 3.924 16 O -0.576 6.576 17 C -0.052 4.052 18 C -0.108 4.108 19 C -0.129 4.129 20 C -0.134 4.134 21 C -0.124 4.124 22 C -0.096 4.096 23 H 0.262 0.738 24 H 0.026 0.974 25 H 0.013 0.987 26 H 0.333 0.667 27 H 0.078 0.922 28 H 0.026 0.974 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.043 0.957 32 H 0.048 0.952 33 H 0.377 0.623 34 H 0.124 0.876 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.245 -8.118 -0.715 14.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.132 4.132 3 Si 0.702 3.298 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.187 1.187 7 C -0.553 4.553 8 H 0.092 0.908 9 C -0.032 4.032 10 C 0.028 3.972 11 H 0.064 0.936 12 N -0.317 5.317 13 C -0.067 4.067 14 C -0.154 4.154 15 C -0.002 4.002 16 O -0.382 6.382 17 C -0.052 4.052 18 C -0.127 4.127 19 C -0.147 4.147 20 C -0.152 4.152 21 C -0.142 4.142 22 C -0.115 4.115 23 H 0.071 0.929 24 H 0.044 0.956 25 H 0.031 0.969 26 H 0.150 0.850 27 H 0.096 0.904 28 H 0.045 0.955 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.223 0.777 34 H 0.142 0.858 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 12.086 -7.280 -0.022 14.109 hybrid contribution -0.078 0.092 -0.831 0.840 sum 12.009 -7.188 -0.853 14.022 Atomic orbital electron populations 1.69909 1.06240 1.26739 1.51409 1.24945 0.94649 0.98953 0.94639 0.86856 0.80655 0.83863 0.78434 1.20470 1.21526 1.18701 1.21095 0.89250 0.94514 1.50473 0.90837 1.19562 0.96434 0.90374 0.96865 1.20557 0.84875 0.99395 0.92374 0.93574 1.60581 1.10492 1.50423 1.10199 1.21828 0.93944 1.00454 0.90464 1.21457 0.95584 1.03697 0.94660 1.22163 0.80692 0.99600 0.97761 1.86474 1.21950 1.97182 1.32554 1.19845 0.95064 0.94932 0.95405 1.20986 1.00259 0.99464 0.91946 1.21018 0.97755 0.98658 0.97261 1.20975 0.96489 0.99784 0.97967 1.21013 0.99482 1.00780 0.92954 1.21005 0.96166 0.96656 0.97673 0.92857 0.95574 0.96857 0.84963 0.90389 0.95537 0.90390 0.91676 0.93840 0.93405 0.77679 0.85798 0.86912 0.87057 0.86806 0.86396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 3 Si 0.87 22.08 27.56 -169.99 -4.68 17.40 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.26 -6.48 6.42 56.52 0.36 -6.12 16 7 C -0.51 -14.39 9.09 -34.44 -0.31 -14.70 16 8 H 0.07 2.18 6.98 -52.48 -0.37 1.81 16 9 C 0.01 0.13 3.77 -27.88 -0.11 0.03 16 10 C 0.14 2.67 2.24 -68.86 -0.15 2.52 16 11 H 0.05 0.92 7.71 -51.93 -0.40 0.52 16 12 N -0.69 -11.24 5.67 -107.95 -0.61 -11.85 16 13 C 0.06 0.90 5.46 -3.82 -0.02 0.88 16 14 C -0.12 -1.47 5.89 -26.73 -0.16 -1.63 16 15 C 0.08 0.83 7.05 37.16 0.26 1.09 16 16 O -0.58 -6.38 13.66 -35.23 -0.48 -6.86 16 17 C -0.05 -0.99 4.25 -104.62 -0.44 -1.44 16 18 C -0.11 -1.91 8.99 -39.58 -0.36 -2.26 16 19 C -0.13 -2.05 10.05 -39.58 -0.40 -2.44 16 20 C -0.13 -2.09 10.05 -39.58 -0.40 -2.49 16 21 C -0.12 -2.08 10.05 -39.58 -0.40 -2.48 16 22 C -0.10 -1.81 8.80 -39.59 -0.35 -2.16 16 23 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 24 H 0.03 0.65 6.89 -51.93 -0.36 0.30 16 25 H 0.01 0.32 6.98 -51.93 -0.36 -0.04 16 26 H 0.33 4.90 8.01 -39.29 -0.31 4.59 16 27 H 0.08 1.23 7.31 -51.93 -0.38 0.85 16 28 H 0.03 0.36 8.14 -51.92 -0.42 -0.06 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.04 0.42 8.14 -51.92 -0.42 0.00 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.38 2.31 9.12 45.56 0.42 2.73 16 34 H 0.12 2.10 7.71 -52.49 -0.40 1.69 16 35 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 36 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 37 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 38 H 0.12 2.21 7.84 -52.49 -0.41 1.80 16 LS Contribution 314.35 15.07 4.74 4.74 Total: -1.00 -32.14 314.35 -8.33 -40.48 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -5.14 Total: 6.37 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: -2.93 Total: -23.17 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.16 Total: -38.95 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -0.48 Total: -6.86 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.68 Total: 17.40 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.14 -8.33 -40.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390768483.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.091 kcal (2) G-P(sol) polarization free energy of solvation -32.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds