Wall clock time and date at job start Mon Mar 30 2020 07:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09000 * 109.47017 * 54.99395 * 10 9 7 12 12 N 1.46908 * 109.46833 * 294.99820 * 10 9 7 13 13 C 1.46901 * 110.99611 * 155.00030 * 12 10 9 14 14 C 1.53008 * 109.46975 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47043 * 179.97438 * 14 13 12 16 16 O 1.42902 * 109.46791 * 180.02562 * 15 14 13 17 17 C 1.50695 * 109.47310 * 174.99934 * 10 9 7 18 18 C 1.38233 * 120.00093 * 79.72590 * 17 10 9 19 19 C 1.38241 * 120.00133 * 179.79073 * 18 17 10 20 20 C 1.38229 * 119.99727 * 0.43877 * 19 18 17 21 21 C 1.38236 * 119.99976 * 359.81143 * 20 19 18 22 22 C 1.38231 * 120.00171 * 359.97438 * 21 20 19 23 23 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 25 25 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 26 26 H 1.00896 * 111.00371 * 31.04673 * 12 10 9 27 27 H 1.09002 * 109.47410 * 299.99608 * 13 12 10 28 28 H 1.08996 * 109.47316 * 60.00010 * 13 12 10 29 29 H 1.08997 * 109.46917 * 300.00547 * 14 13 12 30 30 H 1.09005 * 109.46844 * 59.99940 * 14 13 12 31 31 H 1.09002 * 109.47449 * 299.99774 * 15 14 13 32 32 H 1.08996 * 109.47209 * 60.00134 * 15 14 13 33 33 H 0.96703 * 114.00095 * 180.02562 * 16 15 14 34 34 H 1.08002 * 120.00198 * 359.97438 * 18 17 10 35 35 H 1.07998 * 119.99639 * 180.27390 * 19 18 17 36 36 H 1.07997 * 119.99947 * 179.83467 * 20 19 18 37 37 H 1.08002 * 120.00040 * 179.97438 * 21 20 19 38 38 H 1.08003 * 120.00083 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9292 -3.5590 0.8318 12 7 3.0083 -3.6484 -1.2657 13 6 4.3094 -4.3094 -1.0979 14 6 5.0731 -4.2759 -2.4232 15 6 6.4285 -4.9638 -2.2483 16 8 7.1420 -4.9319 -3.4860 17 6 1.4957 -4.9642 0.1075 18 6 0.8893 -5.5160 -1.0054 19 6 0.2055 -6.7126 -0.8981 20 6 0.1204 -7.3528 0.3240 21 6 0.7224 -6.7984 1.4381 22 6 1.4099 -5.6041 1.3299 23 1 -0.4850 0.8401 -0.0004 24 1 0.6242 -2.5609 0.8844 25 1 0.6244 -2.5529 -0.8956 26 1 3.1228 -2.7066 -1.6089 27 1 4.8855 -3.7888 -0.3329 28 1 4.1544 -5.3448 -0.7943 29 1 4.4968 -4.7966 -3.1879 30 1 5.2280 -3.2406 -2.7272 31 1 7.0046 -4.4426 -1.4837 32 1 6.2740 -5.9990 -1.9442 33 1 8.0124 -5.3517 -3.4492 34 1 0.9523 -5.0138 -1.9595 35 1 -0.2645 -7.1459 -1.7686 36 1 -0.4161 -8.2863 0.4084 37 1 0.6556 -7.2983 2.3931 38 1 1.8806 -5.1711 2.2002 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390768486.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:41 Heat of formation + Delta-G solvation = -64.842172 kcal Electronic energy + Delta-G solvation = -17865.882603 eV Core-core repulsion = 15092.360826 eV Total energy + Delta-G solvation = -2773.521777 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.30789 -38.33870 -37.39224 -35.12594 -33.72639 -31.66446 -31.05002 -30.15114 -26.68022 -24.82284 -23.71682 -23.20724 -22.21054 -20.98724 -18.60675 -18.27875 -17.47719 -16.98882 -16.58674 -16.36089 -15.99673 -15.63705 -15.08689 -14.70996 -14.39361 -14.21700 -14.06821 -13.90009 -13.48832 -13.20789 -12.97877 -12.73843 -12.52355 -12.43966 -12.04727 -12.00847 -11.93088 -11.72170 -11.43436 -11.15745 -10.87624 -10.59814 -9.68495 -9.42960 -9.27909 -8.20862 -6.32703 0.59436 0.65608 1.39468 1.40096 1.50315 2.38784 2.97984 3.08567 3.16759 3.69566 4.01218 4.09463 4.16171 4.27604 4.33458 4.36138 4.42377 4.49088 4.59275 4.67564 4.76282 4.80199 4.83555 4.89533 5.17890 5.21019 5.25080 5.30763 5.41608 5.50335 5.68066 5.73208 5.79787 5.88278 6.15349 6.26779 6.37841 6.58810 6.81902 6.91920 7.36424 8.90429 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.011226 B = 0.007956 C = 0.004987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.555516 B = 3518.643035 C = 5612.814315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.962 3.038 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.536 4.536 8 H 0.060 0.940 9 C 0.041 3.959 10 C 0.142 3.858 11 H 0.033 0.967 12 N -0.682 5.682 13 C 0.071 3.929 14 C -0.113 4.113 15 C 0.083 3.917 16 O -0.595 6.595 17 C -0.079 4.079 18 C -0.106 4.106 19 C -0.131 4.131 20 C -0.131 4.131 21 C -0.125 4.125 22 C -0.139 4.139 23 H 0.263 0.737 24 H -0.009 1.009 25 H -0.002 1.002 26 H 0.347 0.653 27 H 0.026 0.974 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.398 0.602 34 H 0.113 0.887 35 H 0.138 0.862 36 H 0.148 0.852 37 H 0.144 0.856 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.711 -13.989 -0.701 16.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.787 3.213 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.574 4.574 8 H 0.078 0.922 9 C 0.003 3.997 10 C 0.032 3.968 11 H 0.051 0.949 12 N -0.314 5.314 13 C -0.059 4.059 14 C -0.151 4.151 15 C 0.005 3.995 16 O -0.404 6.404 17 C -0.080 4.080 18 C -0.125 4.125 19 C -0.149 4.149 20 C -0.149 4.149 21 C -0.143 4.143 22 C -0.157 4.157 23 H 0.072 0.928 24 H 0.009 0.991 25 H 0.016 0.984 26 H 0.167 0.833 27 H 0.044 0.956 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.248 0.752 34 H 0.131 0.869 35 H 0.156 0.844 36 H 0.166 0.834 37 H 0.162 0.838 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 7.732 -14.118 -1.142 16.137 hybrid contribution 0.968 1.666 0.741 2.064 sum 8.700 -12.452 -0.401 15.195 Atomic orbital electron populations 1.70107 1.07814 1.27737 1.51197 1.25892 0.95611 1.03084 0.94633 0.85499 0.78609 0.78774 0.78464 1.19779 1.20982 1.18890 1.21480 0.93137 0.91807 1.50942 0.92193 1.19016 0.93842 0.91721 0.95074 1.20301 0.94134 0.92045 0.90313 0.94879 1.60434 1.17584 1.24707 1.28665 1.21779 0.88930 0.99264 0.95899 1.21384 0.95032 1.01150 0.97495 1.22056 0.91981 0.99821 0.85661 1.86433 1.35848 1.83386 1.34699 1.20118 0.98218 0.95522 0.94163 1.21055 0.96984 0.95997 0.98450 1.21433 0.99301 0.95252 0.98930 1.21422 1.00133 1.00920 0.92400 1.21351 0.97720 0.95357 0.99826 1.21214 1.01224 0.96543 0.96747 0.92778 0.99101 0.98412 0.83341 0.95585 0.91225 0.91548 0.92520 0.92710 0.92210 0.75208 0.86938 0.84392 0.83416 0.83776 0.86398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.32 13.29 21.45 0.28 -56.04 16 2 C 0.01 0.36 5.46 84.66 0.46 0.82 16 3 Si 0.96 43.88 29.54 68.60 2.03 45.91 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.54 -29.61 8.12 25.60 0.21 -29.41 16 8 H 0.06 3.16 7.49 -2.91 -0.02 3.14 16 9 C 0.04 2.16 4.55 29.85 0.14 2.30 16 10 C 0.14 6.01 2.19 44.16 0.10 6.11 16 11 H 0.03 1.42 7.66 -2.39 -0.02 1.41 16 12 N -0.68 -26.19 5.56 -495.43 -2.76 -28.94 16 13 C 0.07 2.19 5.48 86.31 0.47 2.67 16 14 C -0.11 -3.13 5.84 30.60 0.18 -2.96 16 15 C 0.08 1.80 7.05 71.98 0.51 2.30 16 16 O -0.60 -13.10 13.66 -148.98 -2.03 -15.14 16 17 C -0.08 -3.03 4.71 -19.87 -0.09 -3.13 16 18 C -0.11 -3.83 9.32 22.27 0.21 -3.63 16 19 C -0.13 -3.82 10.05 22.27 0.22 -3.60 16 20 C -0.13 -3.36 10.05 22.27 0.22 -3.14 16 21 C -0.12 -3.40 10.05 22.27 0.22 -3.18 16 22 C -0.14 -4.65 9.67 22.27 0.22 -4.43 16 23 H 0.26 15.05 8.31 -92.70 -0.77 14.28 16 24 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 25 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 26 H 0.35 14.53 7.21 -89.70 -0.65 13.89 16 27 H 0.03 0.81 8.06 -2.39 -0.02 0.79 16 28 H 0.07 2.09 8.00 -2.39 -0.02 2.07 16 29 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 31 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.40 4.49 9.12 -74.06 -0.68 3.82 16 34 H 0.11 4.30 7.73 -2.91 -0.02 4.28 16 35 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 36 H 0.15 2.73 8.06 -2.91 -0.02 2.70 16 37 H 0.14 2.99 8.06 -2.91 -0.02 2.96 16 38 H 0.12 3.75 8.04 -2.91 -0.02 3.72 16 Total: -1.00 -66.73 320.52 0.30 -66.43 By element: Atomic # 1 Polarization: 27.32 SS G_CDS: -0.28 Total: 27.04 kcal Atomic # 6 Polarization: -42.33 SS G_CDS: 3.06 Total: -39.27 kcal Atomic # 7 Polarization: -82.51 SS G_CDS: -2.47 Total: -84.98 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -2.03 Total: -15.14 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -66.73 0.30 -66.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390768486.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.589 kcal (2) G-P(sol) polarization free energy of solvation -66.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds