Wall clock time and date at job start Mon Mar 30 2020 06:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09010 * 109.46729 * 2 1 4 4 C 1.50700 * 109.47211 * 119.99884 * 2 1 3 5 5 H 1.07995 * 120.00043 * 120.00873 * 4 2 1 6 6 C 1.37881 * 119.99768 * 300.00284 * 4 2 1 7 7 N 1.31514 * 120.00289 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99695 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47114 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47231 * 119.99981 * 8 6 4 11 11 H 1.48502 * 109.47148 * 240.00060 * 8 6 4 12 12 N 1.46895 * 109.47403 * 240.00241 * 2 1 3 13 13 C 1.46904 * 111.00207 * 84.99823 * 12 2 1 14 14 H 1.09002 * 115.55029 * 9.41572 * 13 12 2 15 15 C 1.53005 * 117.49808 * 223.74549 * 13 12 2 16 16 C 1.52999 * 59.99973 * 252.48570 * 15 13 12 17 17 H 1.08995 * 117.49529 * 107.48826 * 16 15 13 18 18 C 1.50693 * 117.50064 * 252.51042 * 16 15 13 19 19 C 1.38230 * 120.01281 * 8.62248 * 18 16 15 20 20 C 1.38216 * 120.02435 * 179.97438 * 19 18 16 21 21 C 1.38272 * 120.05539 * 359.97438 * 20 19 18 22 22 C 1.38175 * 120.02138 * 0.04721 * 21 20 19 23 23 C 1.38436 * 120.01464 * 188.34613 * 18 16 15 24 24 F 1.35094 * 120.02629 * 0.02562 * 23 18 16 25 25 H 1.08995 * 109.47699 * 299.99955 * 1 2 3 26 26 H 1.08997 * 109.47412 * 60.00483 * 1 2 3 27 27 H 1.09005 * 109.46337 * 179.97438 * 1 2 3 28 28 H 0.96991 * 119.99902 * 179.97438 * 7 6 4 29 29 H 1.00904 * 110.99838 * 208.94998 * 12 2 1 30 30 H 1.09004 * 117.49602 * 359.97438 * 15 13 12 31 31 H 1.09004 * 117.49357 * 144.97252 * 15 13 12 32 32 H 1.07997 * 119.98392 * 359.96092 * 19 18 16 33 33 H 1.08009 * 119.97202 * 180.02562 * 20 19 18 34 34 H 1.07995 * 119.98500 * 180.02562 * 21 20 19 35 35 H 1.08007 * 120.00900 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5883 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9426 0.8297 2.6034 8 14 2.3225 -1.1194 4.0080 9 1 3.1474 -2.2861 3.6038 10 1 3.1472 -0.1856 4.8161 11 1 1.1678 -1.5866 4.8165 12 7 2.0197 -0.6924 -1.1994 13 6 2.0825 0.2227 -2.3469 14 1 1.9232 1.2763 -2.1173 15 6 1.5653 -0.2934 -3.6912 16 6 3.0683 -0.1149 -3.4672 17 1 3.6706 -1.0161 -3.3529 18 6 3.7447 1.0346 -4.1687 19 6 2.9873 1.9821 -4.8316 20 6 3.6074 3.0367 -5.4747 21 6 4.9857 3.1458 -5.4552 22 6 5.7448 2.1996 -4.7936 23 6 5.1244 1.1452 -4.1446 24 9 5.8653 0.2227 -3.4927 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3632 -1.0278 -0.0005 28 1 0.7080 1.1608 3.4843 29 1 2.9174 -1.1204 -1.0287 30 1 1.1789 -1.3121 -3.7242 31 1 1.0654 0.4206 -4.3458 32 1 1.9108 1.8980 -4.8473 33 1 3.0148 3.7768 -5.9921 34 1 5.4690 3.9706 -5.9577 35 1 6.8214 2.2848 -4.7789 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393202325.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:29 Heat of formation + Delta-G solvation = 1.111500 kcal Electronic energy + Delta-G solvation = -17509.602246 eV Core-core repulsion = 14615.480130 eV Total energy + Delta-G solvation = -2894.122116 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.76889 -39.41976 -37.24411 -34.54974 -31.92116 -30.56992 -30.23358 -27.47577 -25.15844 -24.06315 -22.50003 -21.10504 -20.29643 -19.77822 -17.72017 -16.55887 -16.33709 -15.85929 -15.48469 -14.88666 -14.56607 -14.19027 -14.08722 -13.56131 -13.12337 -12.72354 -12.48883 -12.44338 -11.89583 -11.44746 -11.29202 -11.08520 -10.94721 -10.75283 -10.61413 -10.49482 -10.14731 -10.01618 -9.87844 -8.92922 -8.82794 -8.53852 -8.41412 -7.26097 -6.03940 -4.10471 1.13737 1.16959 3.28782 3.36517 3.41079 3.50070 4.22797 4.35759 4.39092 4.62703 4.71508 4.88537 5.08960 5.11372 5.27493 5.29249 5.32151 5.47220 5.86021 5.88628 5.96326 6.09424 6.14604 6.18967 6.34531 6.42388 6.53051 6.87256 6.87791 7.14998 7.21514 7.49374 7.77219 7.86973 8.23721 8.34778 8.61586 8.99250 9.55566 11.02500 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.028327 B = 0.004980 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.210967 B = 5621.288124 C = 5976.656943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.212 3.788 3 H 0.004 0.996 4 C -0.520 4.520 5 H 0.061 0.939 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.657 5.657 13 C 0.061 3.939 14 H 0.094 0.906 15 C -0.164 4.164 16 C -0.150 4.150 17 H 0.114 0.886 18 C -0.069 4.069 19 C -0.097 4.097 20 C -0.128 4.128 21 C -0.105 4.105 22 C -0.153 4.153 23 C 0.099 3.901 24 F -0.137 7.137 25 H 0.081 0.919 26 H 0.006 0.994 27 H 0.031 0.969 28 H 0.261 0.739 29 H 0.336 0.664 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.134 0.866 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.473 3.915 -15.709 17.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.105 3.895 3 H 0.021 0.979 4 C -0.558 4.558 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.209 1.209 12 N -0.287 5.287 13 C -0.051 4.051 14 H 0.112 0.888 15 C -0.203 4.203 16 C -0.169 4.169 17 H 0.132 0.868 18 C -0.070 4.070 19 C -0.115 4.115 20 C -0.146 4.146 21 C -0.123 4.123 22 C -0.172 4.172 23 C 0.080 3.920 24 F -0.115 7.115 25 H 0.099 0.901 26 H 0.025 0.975 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.156 0.844 30 H 0.119 0.881 31 H 0.109 0.891 32 H 0.152 0.848 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.800 3.730 -15.658 16.797 hybrid contribution 1.241 -0.042 1.180 1.712 sum 6.040 3.689 -14.479 16.116 Atomic orbital electron populations 1.21707 0.97652 0.99393 0.99437 1.19199 0.92765 0.92371 0.85179 0.97866 1.21295 1.31486 1.12601 0.90438 0.92125 1.24912 0.94996 0.94982 0.99067 1.69904 1.36612 1.22911 1.23408 0.86454 0.78619 0.79628 0.82795 1.19723 1.21064 1.20939 1.60562 1.31440 1.31174 1.05558 1.22683 0.98501 0.96285 0.87636 0.88825 1.23291 0.93109 1.03142 1.00725 1.21399 0.92728 0.97744 1.05043 0.86786 1.19351 0.91421 0.97289 0.98970 1.21016 1.00488 0.93467 0.96488 1.21170 0.94731 0.98401 1.00272 1.20942 0.93885 0.98431 0.99047 1.21112 1.00859 0.94953 1.00295 1.17538 0.88698 0.89152 0.96605 1.91492 1.76543 1.64467 1.79033 0.90085 0.97539 0.94977 0.92945 0.84386 0.88061 0.89098 0.84823 0.85494 0.85341 0.84974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.10 9.19 37.16 0.34 -2.76 16 2 C 0.21 5.43 2.56 -68.87 -0.18 5.26 16 3 H 0.00 0.10 7.57 -51.92 -0.39 -0.29 16 4 C -0.52 -14.39 8.59 -34.44 -0.30 -14.69 16 5 H 0.06 1.66 7.62 -52.49 -0.40 1.26 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.54 11.32 55.43 0.63 -24.92 16 8 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 9 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 N -0.66 -14.27 6.55 -100.95 -0.66 -14.93 16 13 C 0.06 1.12 5.67 -67.71 -0.38 0.73 16 14 H 0.09 1.82 7.60 -51.93 -0.39 1.43 16 15 C -0.16 -2.47 9.79 -26.73 -0.26 -2.73 16 16 C -0.15 -2.35 5.60 -91.77 -0.51 -2.87 16 17 H 0.11 1.84 7.87 -51.93 -0.41 1.43 16 18 C -0.07 -1.00 5.62 -104.56 -0.59 -1.59 16 19 C -0.10 -1.19 9.30 -39.59 -0.37 -1.56 16 20 C -0.13 -1.33 10.04 -39.58 -0.40 -1.72 16 21 C -0.10 -1.06 10.04 -39.59 -0.40 -1.46 16 22 C -0.15 -1.80 10.03 -39.51 -0.40 -2.20 16 23 C 0.10 1.44 7.25 -39.42 -0.29 1.15 16 24 F -0.14 -2.16 16.62 2.25 0.04 -2.13 16 25 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 26 H 0.01 0.13 8.07 -51.93 -0.42 -0.29 16 27 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.34 7.24 8.18 -39.29 -0.32 6.92 16 30 H 0.10 1.54 8.14 -51.93 -0.42 1.11 16 31 H 0.09 1.16 6.18 -51.93 -0.32 0.84 16 32 H 0.13 1.48 6.02 -52.49 -0.32 1.16 16 33 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 34 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 LS Contribution 298.26 15.07 4.49 4.49 Total: -1.00 -29.18 298.26 -8.88 -38.06 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -4.54 Total: 5.82 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: -3.82 Total: -22.80 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: -0.03 Total: -39.84 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.18 -8.88 -38.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393202325.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.169 kcal (2) G-P(sol) polarization free energy of solvation -29.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds