Wall clock time and date at job start Mon Mar 30 2020 06:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09010 * 109.46729 * 2 1 4 4 C 1.50700 * 109.47211 * 119.99884 * 2 1 3 5 5 H 1.07995 * 120.00043 * 120.00873 * 4 2 1 6 6 C 1.37881 * 119.99768 * 300.00284 * 4 2 1 7 7 N 1.31514 * 120.00289 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99695 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47114 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47231 * 119.99981 * 8 6 4 11 11 H 1.48502 * 109.47148 * 240.00060 * 8 6 4 12 12 N 1.46895 * 109.47403 * 240.00241 * 2 1 3 13 13 C 1.46904 * 111.00207 * 84.99823 * 12 2 1 14 14 H 1.09002 * 115.55029 * 9.41572 * 13 12 2 15 15 C 1.53005 * 117.49808 * 223.74549 * 13 12 2 16 16 C 1.52999 * 59.99973 * 252.48570 * 15 13 12 17 17 H 1.08995 * 117.49529 * 107.48826 * 16 15 13 18 18 C 1.50693 * 117.50064 * 252.51042 * 16 15 13 19 19 C 1.38230 * 120.01281 * 8.62248 * 18 16 15 20 20 C 1.38216 * 120.02435 * 179.97438 * 19 18 16 21 21 C 1.38272 * 120.05539 * 359.97438 * 20 19 18 22 22 C 1.38175 * 120.02138 * 0.04721 * 21 20 19 23 23 C 1.38436 * 120.01464 * 188.34613 * 18 16 15 24 24 F 1.35094 * 120.02629 * 0.02562 * 23 18 16 25 25 H 1.08995 * 109.47699 * 299.99955 * 1 2 3 26 26 H 1.08997 * 109.47412 * 60.00483 * 1 2 3 27 27 H 1.09005 * 109.46337 * 179.97438 * 1 2 3 28 28 H 0.96991 * 119.99902 * 179.97438 * 7 6 4 29 29 H 1.00904 * 110.99838 * 208.94998 * 12 2 1 30 30 H 1.09004 * 117.49602 * 359.97438 * 15 13 12 31 31 H 1.09004 * 117.49357 * 144.97252 * 15 13 12 32 32 H 1.07997 * 119.98392 * 359.96092 * 19 18 16 33 33 H 1.08009 * 119.97202 * 180.02562 * 20 19 18 34 34 H 1.07995 * 119.98500 * 180.02562 * 21 20 19 35 35 H 1.08007 * 120.00900 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5883 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9426 0.8297 2.6034 8 14 2.3225 -1.1194 4.0080 9 1 3.1474 -2.2861 3.6038 10 1 3.1472 -0.1856 4.8161 11 1 1.1678 -1.5866 4.8165 12 7 2.0197 -0.6924 -1.1994 13 6 2.0825 0.2227 -2.3469 14 1 1.9232 1.2763 -2.1173 15 6 1.5653 -0.2934 -3.6912 16 6 3.0683 -0.1149 -3.4672 17 1 3.6706 -1.0161 -3.3529 18 6 3.7447 1.0346 -4.1687 19 6 2.9873 1.9821 -4.8316 20 6 3.6074 3.0367 -5.4747 21 6 4.9857 3.1458 -5.4552 22 6 5.7448 2.1996 -4.7936 23 6 5.1244 1.1452 -4.1446 24 9 5.8653 0.2227 -3.4927 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3632 -1.0278 -0.0005 28 1 0.7080 1.1608 3.4843 29 1 2.9174 -1.1204 -1.0287 30 1 1.1789 -1.3121 -3.7242 31 1 1.0654 0.4206 -4.3458 32 1 1.9108 1.8980 -4.8473 33 1 3.0148 3.7768 -5.9921 34 1 5.4690 3.9706 -5.9577 35 1 6.8214 2.2848 -4.7789 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393202325.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:28 Heat of formation + Delta-G solvation = -15.429707 kcal Electronic energy + Delta-G solvation = -17510.319527 eV Core-core repulsion = 14615.480130 eV Total energy + Delta-G solvation = -2894.839396 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.88975 -40.47566 -38.57831 -36.35879 -33.78549 -31.58800 -31.33217 -29.29018 -27.28653 -25.09328 -23.49051 -22.67812 -21.60503 -21.44501 -18.79538 -18.47655 -17.44680 -17.06561 -16.66437 -16.58709 -16.04575 -15.55184 -15.34140 -15.06332 -14.41569 -14.22179 -13.95695 -13.48201 -13.33836 -13.05450 -12.87346 -12.62717 -12.56773 -12.29638 -12.25745 -12.15479 -11.97488 -11.60738 -11.37362 -10.89339 -10.58380 -9.87506 -9.57896 -8.94410 -8.16461 -6.31001 0.18207 0.26008 1.39739 1.41167 1.53407 2.39227 2.54348 3.00991 3.11808 3.33729 3.37540 3.70982 3.78584 3.93134 4.10821 4.20827 4.38637 4.40600 4.46855 4.70777 4.81367 4.94421 4.98327 5.08356 5.12453 5.17247 5.20047 5.25359 5.44552 5.47073 5.50736 5.65241 5.82944 5.97322 6.18226 6.40377 6.70923 6.92159 7.39405 8.89584 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.028327 B = 0.004980 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.210967 B = 5621.288124 C = 5976.656943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.218 3.782 3 H -0.031 1.031 4 C -0.542 4.542 5 H 0.057 0.943 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.964 3.036 9 H -0.268 1.268 10 H -0.280 1.280 11 H -0.277 1.277 12 N -0.655 5.655 13 C 0.027 3.973 14 H 0.079 0.921 15 C -0.138 4.138 16 C -0.134 4.134 17 H 0.103 0.897 18 C -0.095 4.095 19 C -0.104 4.104 20 C -0.122 4.122 21 C -0.096 4.096 22 C -0.157 4.157 23 C 0.067 3.933 24 F -0.155 7.155 25 H 0.057 0.943 26 H 0.024 0.976 27 H 0.028 0.972 28 H 0.264 0.736 29 H 0.332 0.668 30 H 0.102 0.898 31 H 0.119 0.881 32 H 0.145 0.855 33 H 0.161 0.839 34 H 0.166 0.834 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.757 4.712 -17.285 18.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.110 3.890 3 H -0.013 1.013 4 C -0.580 4.580 5 H 0.075 0.925 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.789 3.211 9 H -0.192 1.192 10 H -0.205 1.205 11 H -0.203 1.203 12 N -0.285 5.285 13 C -0.084 4.084 14 H 0.097 0.903 15 C -0.176 4.176 16 C -0.153 4.153 17 H 0.121 0.879 18 C -0.096 4.096 19 C -0.121 4.121 20 C -0.140 4.140 21 C -0.113 4.113 22 C -0.175 4.175 23 C 0.047 3.953 24 F -0.134 7.134 25 H 0.076 0.924 26 H 0.043 0.957 27 H 0.047 0.953 28 H 0.073 0.927 29 H 0.151 0.849 30 H 0.121 0.879 31 H 0.137 0.863 32 H 0.163 0.837 33 H 0.179 0.821 34 H 0.183 0.817 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 5.082 4.527 -17.262 18.555 hybrid contribution 1.186 -0.190 1.557 1.967 sum 6.268 4.336 -15.704 17.456 Atomic orbital electron populations 1.21508 0.97259 0.98935 0.99145 1.18975 0.93027 0.90590 0.86425 1.01350 1.21611 1.31853 1.12796 0.91727 0.92454 1.25731 0.95077 0.95663 1.02034 1.70022 1.37324 1.24003 1.24234 0.85417 0.78190 0.78547 0.78925 1.19237 1.20537 1.20258 1.60510 1.31288 1.31610 1.05063 1.22618 1.02930 0.95118 0.87761 0.90299 1.23370 0.92860 1.03640 0.97741 1.21279 0.93098 0.97948 1.02975 0.87854 1.19394 0.91752 0.97886 1.00603 1.21251 1.01059 0.93514 0.96322 1.21609 0.95301 0.97984 0.99059 1.21427 0.93894 0.98414 0.97602 1.21432 1.02108 0.94289 0.99694 1.17963 0.88995 0.90197 0.98101 1.91439 1.76914 1.65326 1.79680 0.92388 0.95711 0.95293 0.92710 0.84926 0.87943 0.86270 0.83709 0.82141 0.81668 0.83216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.63 9.19 71.98 0.66 -4.97 16 2 C 0.22 11.55 2.56 44.17 0.11 11.66 16 3 H -0.03 -1.82 7.57 -2.38 -0.02 -1.84 16 4 C -0.54 -30.72 8.59 25.60 0.22 -30.50 16 5 H 0.06 3.21 7.62 -2.91 -0.02 3.19 16 6 C 0.01 0.81 5.30 84.66 0.45 1.26 16 7 N -0.92 -53.58 11.32 21.45 0.24 -53.34 16 8 Si 0.96 44.29 29.54 68.60 2.03 46.32 16 9 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 11 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 12 N -0.65 -29.30 6.55 -473.29 -3.10 -32.39 16 13 C 0.03 1.01 5.67 44.92 0.25 1.26 16 14 H 0.08 3.18 7.60 -2.39 -0.02 3.16 16 15 C -0.14 -4.00 9.79 30.60 0.30 -3.70 16 16 C -0.13 -4.22 5.60 -11.54 -0.06 -4.29 16 17 H 0.10 3.44 7.87 -2.39 -0.02 3.42 16 18 C -0.10 -2.71 5.62 -19.82 -0.11 -2.82 16 19 C -0.10 -2.33 9.30 22.26 0.21 -2.13 16 20 C -0.12 -2.09 10.04 22.27 0.22 -1.87 16 21 C -0.10 -1.58 10.04 22.26 0.22 -1.36 16 22 C -0.16 -3.39 10.03 22.31 0.22 -3.16 16 23 C 0.07 1.91 7.25 22.38 0.16 2.07 16 24 F -0.15 -5.06 16.62 44.97 0.75 -4.31 16 25 H 0.06 3.23 6.07 -2.39 -0.01 3.21 16 26 H 0.02 1.12 8.07 -2.39 -0.02 1.10 16 27 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 28 H 0.26 14.52 8.31 -92.72 -0.77 13.75 16 29 H 0.33 14.90 8.18 -89.69 -0.73 14.17 16 30 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 31 H 0.12 2.75 6.18 -2.38 -0.01 2.73 16 32 H 0.15 2.82 6.02 -2.91 -0.02 2.80 16 33 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 34 H 0.17 1.53 8.06 -2.91 -0.02 1.50 16 35 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -64.45 298.26 3.14 -61.31 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 0.36 Total: 20.96 kcal Atomic # 6 Polarization: -41.41 SS G_CDS: 2.86 Total: -38.55 kcal Atomic # 7 Polarization: -82.88 SS G_CDS: -2.86 Total: -85.73 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 0.75 Total: -4.31 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -64.45 3.14 -61.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393202325.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.877 kcal (2) G-P(sol) polarization free energy of solvation -64.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds