Wall clock time and date at job start Mon Mar 30 2020 07:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99876 * 2 1 4 4 H 1.48496 * 109.47395 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47188 * 300.00643 * 3 2 1 6 6 H 1.48501 * 109.46854 * 60.00069 * 3 2 1 7 7 C 1.37872 * 120.00155 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00083 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99955 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47233 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47278 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46962 * 179.97438 * 11 10 9 13 13 O 1.42901 * 109.47061 * 179.97438 * 12 11 10 14 14 C 1.42894 * 114.00572 * 179.97438 * 13 12 11 15 15 C 1.50689 * 109.47746 * 179.97438 * 14 13 12 16 16 C 1.38293 * 119.92619 * 90.00070 * 15 14 13 17 17 C 1.38103 * 120.07544 * 180.02562 * 16 15 14 18 18 C 1.38914 * 119.92585 * 0.02562 * 17 16 15 19 19 N 1.39671 * 120.07130 * 179.97438 * 18 17 16 20 20 C 1.38912 * 119.84788 * 0.25342 * 18 17 16 21 21 C 1.38098 * 119.92495 * 359.48977 * 20 18 17 22 22 H 0.97000 * 120.00052 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47299 * 60.00284 * 9 7 2 24 24 H 1.08998 * 109.47252 * 299.99682 * 9 7 2 25 25 H 1.09000 * 109.47636 * 59.99559 * 10 9 7 26 26 H 1.09003 * 109.46767 * 299.99851 * 10 9 7 27 27 H 1.08996 * 109.47325 * 59.99712 * 11 10 9 28 28 H 1.09003 * 109.47051 * 299.99617 * 11 10 9 29 29 H 1.08996 * 109.47177 * 59.99815 * 12 11 10 30 30 H 1.09003 * 109.47084 * 299.99791 * 12 11 10 31 31 H 1.09007 * 109.46963 * 59.99273 * 14 13 12 32 32 H 1.09003 * 109.46797 * 300.00619 * 14 13 12 33 33 H 1.08001 * 119.95818 * 0.04180 * 16 15 14 34 34 H 1.07999 * 120.03416 * 179.97438 * 17 16 15 35 35 H 0.97001 * 120.00529 * 0.02562 * 19 18 17 36 36 H 0.97005 * 119.99745 * 179.72366 * 19 18 17 37 37 H 1.08005 * 120.03088 * 179.72680 * 20 18 17 38 38 H 1.08005 * 119.96252 * 180.25688 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9870 -0.0012 12 6 2.4747 -6.1499 -0.0018 13 8 1.7603 -7.3875 -0.0018 14 6 2.6001 -8.5436 -0.0030 15 6 1.7461 -9.7851 -0.0022 16 6 1.3537 -10.3533 -1.2004 17 6 0.5705 -11.4908 -1.2034 18 6 0.1764 -12.0639 -0.0009 19 7 -0.6161 -13.2140 -0.0003 20 6 0.5675 -11.4872 1.2008 21 6 1.3551 -10.3529 1.1965 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6248 -2.5571 0.8897 25 1 2.8721 -3.6043 0.8894 26 1 2.8720 -3.6042 -0.8906 27 1 0.8540 -5.0446 -0.8913 28 1 0.8535 -5.0451 0.8886 29 1 3.1014 -6.0926 0.8881 30 1 3.1013 -6.0917 -0.8919 31 1 3.2302 -8.5359 0.8865 32 1 3.2288 -8.5351 -0.8934 33 1 1.6603 -9.9071 -2.1349 34 1 0.2641 -11.9337 -2.1395 35 1 -0.8916 -13.6137 -0.8401 36 1 -0.8873 -13.6156 0.8400 37 1 0.2591 -11.9279 2.1374 38 1 1.6630 -9.9064 2.1305 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395362005.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:32 Heat of formation + Delta-G solvation = -49.050399 kcal Electronic energy + Delta-G solvation = -16666.738431 eV Core-core repulsion = 13893.901437 eV Total energy + Delta-G solvation = -2772.836994 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.62048 -37.74019 -35.07703 -34.31133 -32.29475 -31.02274 -30.16341 -28.40044 -25.34544 -24.35544 -22.97859 -21.67644 -21.23683 -19.96677 -17.34496 -17.14807 -16.25199 -16.18410 -15.83851 -15.73508 -14.49590 -14.43679 -14.13196 -13.71958 -13.43541 -13.37397 -13.11811 -12.36233 -12.20337 -11.80569 -11.31804 -11.16154 -11.15416 -10.98896 -10.65383 -10.62286 -10.46587 -10.32996 -9.62106 -9.36968 -9.26610 -9.04582 -8.98814 -8.30222 -7.71613 -5.95009 -3.97252 1.32912 1.38283 3.34011 3.41134 3.45436 3.55692 3.61514 4.21498 4.50495 4.70203 4.85019 4.99097 5.15336 5.29946 5.40205 5.40346 5.45562 5.57830 5.62459 5.67330 5.85230 5.92597 6.14523 6.18553 6.22576 6.26528 6.55078 6.62419 6.71096 6.85380 6.99040 7.16403 7.23309 7.46003 7.47925 7.74528 7.89876 8.06255 8.48486 9.10467 9.66477 11.16433 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.058586 B = 0.002647 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.814074 B =10576.503917 C =10722.518876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.054 3.946 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.107 4.107 11 C -0.116 4.116 12 C 0.062 3.938 13 O -0.385 6.385 14 C 0.108 3.892 15 C -0.144 4.144 16 C -0.050 4.050 17 C -0.202 4.202 18 C 0.216 3.784 19 N -0.880 5.880 20 C -0.202 4.202 21 C -0.050 4.050 22 H 0.259 0.741 23 H 0.016 0.984 24 H 0.016 0.984 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.397 0.603 36 H 0.397 0.603 37 H 0.119 0.881 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.361 -26.391 -0.003 26.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.145 4.145 11 C -0.154 4.154 12 C -0.014 4.014 13 O -0.304 6.304 14 C 0.032 3.968 15 C -0.146 4.146 16 C -0.068 4.068 17 C -0.224 4.224 18 C 0.112 3.888 19 N -0.419 5.419 20 C -0.224 4.224 21 C -0.068 4.068 22 H 0.069 0.931 23 H 0.035 0.965 24 H 0.035 0.965 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.225 0.775 36 H 0.225 0.775 37 H 0.137 0.863 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.041 -26.240 -0.003 26.319 hybrid contribution 0.423 0.647 0.000 0.773 sum 2.464 -25.592 -0.003 25.711 Atomic orbital electron populations 1.69983 1.06048 1.26410 1.51093 1.25044 0.94855 0.99264 0.95461 0.86544 0.80095 0.83865 0.77539 1.19769 1.21047 1.21042 1.21319 0.93061 0.91150 1.50213 0.92666 1.19100 0.94028 0.91211 0.97338 1.21577 0.99160 0.93507 1.00263 1.21632 0.98105 0.92903 1.02735 1.22689 0.95413 0.83718 0.99598 1.87993 1.33841 1.13258 1.95348 1.21158 0.91563 0.83823 1.00290 1.19409 1.04294 0.97552 0.93340 1.20811 0.94629 0.93812 0.97588 1.20543 1.05827 0.99937 0.96127 1.17822 0.90098 0.86946 0.93968 1.42476 1.59070 1.29642 1.10749 1.20543 1.05777 0.99970 0.96137 1.20808 0.94604 0.93845 0.97581 0.93097 0.96525 0.96534 0.93355 0.93365 0.91745 0.91741 0.93702 0.93693 0.93048 0.93042 0.85969 0.86272 0.77523 0.77525 0.86270 0.85970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.60 13.29 55.43 0.74 -26.86 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.11 -2.28 5.15 -26.73 -0.14 -2.42 16 11 C -0.12 -2.15 5.58 -26.73 -0.15 -2.30 16 12 C 0.06 0.97 5.94 37.16 0.22 1.19 16 13 O -0.38 -6.10 10.33 -35.23 -0.36 -6.46 16 14 C 0.11 1.34 6.06 36.00 0.22 1.56 16 15 C -0.14 -1.74 5.51 -104.59 -0.58 -2.32 16 16 C -0.05 -0.55 9.69 -39.61 -0.38 -0.94 16 17 C -0.20 -2.01 9.90 -39.38 -0.39 -2.40 16 18 C 0.22 2.05 6.75 -83.79 -0.57 1.48 16 19 N -0.88 -5.48 9.09 32.41 0.29 -5.18 16 20 C -0.20 -2.01 9.90 -39.38 -0.39 -2.40 16 21 C -0.05 -0.55 9.69 -39.62 -0.38 -0.94 16 22 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 23 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.57 8.08 -51.92 -0.42 0.15 16 32 H 0.05 0.57 8.08 -51.93 -0.42 0.15 16 33 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 34 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 35 H 0.40 1.79 8.84 -40.82 -0.36 1.43 16 36 H 0.40 1.79 8.84 -40.82 -0.36 1.43 16 37 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 38 H 0.12 1.21 8.06 -52.48 -0.42 0.78 16 LS Contribution 324.55 15.07 4.89 4.89 Total: -1.00 -32.76 324.55 -8.73 -41.49 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -6.18 Total: -1.92 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: -3.09 Total: -22.98 kcal Atomic # 7 Polarization: -33.08 SS G_CDS: 1.03 Total: -32.05 kcal Atomic # 8 Polarization: -6.10 SS G_CDS: -0.36 Total: -6.46 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.76 -8.73 -41.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395362005.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.559 kcal (2) G-P(sol) polarization free energy of solvation -32.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds