Wall clock time and date at job start Mon Mar 30 2020 07:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99876 * 2 1 4 4 H 1.48496 * 109.47395 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47188 * 300.00643 * 3 2 1 6 6 H 1.48501 * 109.46854 * 60.00069 * 3 2 1 7 7 C 1.37872 * 120.00155 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00083 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99955 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47233 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47278 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46962 * 179.97438 * 11 10 9 13 13 O 1.42901 * 109.47061 * 179.97438 * 12 11 10 14 14 C 1.42894 * 114.00572 * 179.97438 * 13 12 11 15 15 C 1.50689 * 109.47746 * 179.97438 * 14 13 12 16 16 C 1.38293 * 119.92619 * 90.00070 * 15 14 13 17 17 C 1.38103 * 120.07544 * 180.02562 * 16 15 14 18 18 C 1.38914 * 119.92585 * 0.02562 * 17 16 15 19 19 N 1.39671 * 120.07130 * 179.97438 * 18 17 16 20 20 C 1.38912 * 119.84788 * 0.25342 * 18 17 16 21 21 C 1.38098 * 119.92495 * 359.48977 * 20 18 17 22 22 H 0.97000 * 120.00052 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47299 * 60.00284 * 9 7 2 24 24 H 1.08998 * 109.47252 * 299.99682 * 9 7 2 25 25 H 1.09000 * 109.47636 * 59.99559 * 10 9 7 26 26 H 1.09003 * 109.46767 * 299.99851 * 10 9 7 27 27 H 1.08996 * 109.47325 * 59.99712 * 11 10 9 28 28 H 1.09003 * 109.47051 * 299.99617 * 11 10 9 29 29 H 1.08996 * 109.47177 * 59.99815 * 12 11 10 30 30 H 1.09003 * 109.47084 * 299.99791 * 12 11 10 31 31 H 1.09007 * 109.46963 * 59.99273 * 14 13 12 32 32 H 1.09003 * 109.46797 * 300.00619 * 14 13 12 33 33 H 1.08001 * 119.95818 * 0.04180 * 16 15 14 34 34 H 1.07999 * 120.03416 * 179.97438 * 17 16 15 35 35 H 0.97001 * 120.00529 * 0.02562 * 19 18 17 36 36 H 0.97005 * 119.99745 * 179.72366 * 19 18 17 37 37 H 1.08005 * 120.03088 * 179.72680 * 20 18 17 38 38 H 1.08005 * 119.96252 * 180.25688 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9870 -0.0012 12 6 2.4747 -6.1499 -0.0018 13 8 1.7603 -7.3875 -0.0018 14 6 2.6001 -8.5436 -0.0030 15 6 1.7461 -9.7851 -0.0022 16 6 1.3537 -10.3533 -1.2004 17 6 0.5705 -11.4908 -1.2034 18 6 0.1764 -12.0639 -0.0009 19 7 -0.6161 -13.2140 -0.0003 20 6 0.5675 -11.4872 1.2008 21 6 1.3551 -10.3529 1.1965 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6248 -2.5571 0.8897 25 1 2.8721 -3.6043 0.8894 26 1 2.8720 -3.6042 -0.8906 27 1 0.8540 -5.0446 -0.8913 28 1 0.8535 -5.0451 0.8886 29 1 3.1014 -6.0926 0.8881 30 1 3.1013 -6.0917 -0.8919 31 1 3.2302 -8.5359 0.8865 32 1 3.2288 -8.5351 -0.8934 33 1 1.6603 -9.9071 -2.1349 34 1 0.2641 -11.9337 -2.1395 35 1 -0.8916 -13.6137 -0.8401 36 1 -0.8873 -13.6156 0.8400 37 1 0.2591 -11.9279 2.1374 38 1 1.6630 -9.9064 2.1305 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395362005.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:32 Heat of formation + Delta-G solvation = -69.253655 kcal Electronic energy + Delta-G solvation = -16667.614510 eV Core-core repulsion = 13893.901437 eV Total energy + Delta-G solvation = -2773.713073 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.39686 -38.85537 -36.48584 -35.48779 -34.25706 -31.77789 -31.25411 -29.98044 -26.76188 -25.71164 -23.73509 -23.34953 -22.14359 -21.64428 -18.44303 -18.03549 -17.81712 -17.35127 -17.00059 -16.67836 -16.44210 -15.67344 -15.06300 -14.84003 -14.49683 -14.23777 -14.19500 -13.94939 -13.66154 -13.60502 -12.85919 -12.82188 -12.38544 -12.30297 -12.20967 -11.91616 -11.82642 -11.42886 -11.41812 -11.29192 -11.05217 -10.55887 -10.48926 -9.82374 -8.39841 -8.19245 -6.30965 0.55616 0.58290 1.40689 1.41398 1.55014 2.41502 2.67559 3.04660 3.13569 3.23741 3.94857 4.01871 4.09528 4.17056 4.31850 4.34922 4.47131 4.50153 4.60700 4.64279 4.70582 4.82461 4.89830 4.95164 5.17314 5.19004 5.26637 5.30814 5.40928 5.49759 5.54560 5.76568 5.82023 5.86793 5.98735 6.25230 6.35688 6.61141 6.86868 7.02089 7.38458 8.93122 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.058586 B = 0.002647 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.814074 B =10576.503917 C =10722.518876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.006 4.006 3 Si 0.969 3.031 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.021 3.979 10 C -0.094 4.094 11 C -0.110 4.110 12 C 0.070 3.930 13 O -0.408 6.408 14 C 0.106 3.894 15 C -0.170 4.170 16 C -0.062 4.062 17 C -0.212 4.212 18 C 0.215 3.785 19 N -0.868 5.868 20 C -0.212 4.212 21 C -0.062 4.062 22 H 0.263 0.737 23 H -0.011 1.011 24 H -0.011 1.011 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.128 0.872 34 H 0.137 0.863 35 H 0.407 0.593 36 H 0.407 0.593 37 H 0.137 0.863 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.516 -27.240 -0.003 27.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.793 3.207 4 H -0.184 1.184 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.580 4.580 8 H 0.081 0.919 9 C -0.016 4.016 10 C -0.131 4.131 11 C -0.148 4.148 12 C -0.006 4.006 13 O -0.328 6.328 14 C 0.030 3.970 15 C -0.173 4.173 16 C -0.081 4.081 17 C -0.235 4.235 18 C 0.108 3.892 19 N -0.407 5.407 20 C -0.235 4.235 21 C -0.080 4.080 22 H 0.072 0.928 23 H 0.008 0.992 24 H 0.008 0.992 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.146 0.854 34 H 0.155 0.845 35 H 0.236 0.764 36 H 0.236 0.764 37 H 0.155 0.845 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.192 -27.135 -0.004 27.322 hybrid contribution -0.022 0.800 0.000 0.800 sum 3.170 -26.335 -0.003 26.525 Atomic orbital electron populations 1.70124 1.07942 1.27730 1.51864 1.26064 0.95820 1.03638 0.94769 0.85339 0.79096 0.78470 0.77766 1.18354 1.20366 1.20356 1.21764 0.93680 0.92308 1.50271 0.91863 1.19038 0.94560 0.93335 0.94705 1.21355 0.98000 0.92685 1.01099 1.21461 0.98366 0.93151 1.01773 1.22494 0.94297 0.82803 1.00989 1.87949 1.35267 1.14034 1.95571 1.21327 0.91553 0.82693 1.01414 1.19527 1.05673 0.97952 0.94100 1.21005 0.94983 0.94398 0.97665 1.20791 1.05669 0.99791 0.97203 1.17978 0.89899 0.87556 0.93733 1.42466 1.57833 1.28467 1.11969 1.20791 1.05621 0.99827 0.97214 1.21001 0.94961 0.94428 0.97657 0.92781 0.99223 0.99231 0.92413 0.92424 0.92767 0.92763 0.92282 0.92270 0.91865 0.91859 0.85374 0.84487 0.76368 0.76369 0.84488 0.85377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.68 13.29 21.45 0.28 -58.39 16 2 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 3 Si 0.97 45.06 29.54 68.60 2.03 47.09 16 4 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.54 -31.74 9.11 25.60 0.23 -31.50 16 8 H 0.06 3.51 7.74 -2.91 -0.02 3.49 16 9 C 0.02 1.14 4.97 29.85 0.15 1.29 16 10 C -0.09 -3.97 5.15 30.60 0.16 -3.81 16 11 C -0.11 -4.07 5.58 30.59 0.17 -3.90 16 12 C 0.07 2.10 5.94 71.98 0.43 2.53 16 13 O -0.41 -12.64 10.33 -148.98 -1.54 -14.18 16 14 C 0.11 2.52 6.06 71.23 0.43 2.95 16 15 C -0.17 -4.03 5.51 -19.84 -0.11 -4.14 16 16 C -0.06 -1.34 9.69 22.25 0.22 -1.12 16 17 C -0.21 -3.95 9.90 22.40 0.22 -3.73 16 18 C 0.21 3.73 6.75 38.22 0.26 3.99 16 19 N -0.87 -8.92 9.09 -51.37 -0.47 -9.39 16 20 C -0.21 -3.95 9.90 22.40 0.22 -3.73 16 21 C -0.06 -1.34 9.69 22.25 0.22 -1.12 16 22 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 23 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 24 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 25 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 26 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.06 1.32 8.08 -2.38 -0.02 1.30 16 32 H 0.06 1.32 8.08 -2.39 -0.02 1.30 16 33 H 0.13 2.47 8.06 -2.91 -0.02 2.44 16 34 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 35 H 0.41 2.73 8.84 -92.71 -0.82 1.91 16 36 H 0.41 2.73 8.84 -92.70 -0.82 1.91 16 37 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 38 H 0.13 2.47 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -70.39 324.55 2.76 -67.63 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -0.60 Total: 9.40 kcal Atomic # 6 Polarization: -45.21 SS G_CDS: 3.05 Total: -42.16 kcal Atomic # 7 Polarization: -67.60 SS G_CDS: -0.18 Total: -67.78 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -1.54 Total: -14.18 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -70.39 2.76 -67.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395362005.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.628 kcal (2) G-P(sol) polarization free energy of solvation -70.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds