Wall clock time and date at job start Mon Mar 30 2020 07:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86791 * 120.00058 * 2 1 4 4 H 1.48502 * 109.47426 * 270.00277 * 3 2 1 5 5 H 1.48500 * 109.47168 * 30.00135 * 3 2 1 6 6 H 1.48504 * 109.47197 * 150.00446 * 3 2 1 7 7 C 1.37876 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00375 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99994 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46936 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46786 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46786 * 180.02562 * 11 10 9 13 13 O 1.42903 * 109.47006 * 179.97438 * 12 11 10 14 14 C 1.35899 * 116.99930 * 180.02562 * 13 12 11 15 15 C 1.38747 * 120.05586 * 359.97438 * 14 13 12 16 16 C 1.38125 * 119.94590 * 180.02562 * 15 14 13 17 17 C 1.38289 * 120.05159 * 359.97438 * 16 15 14 18 18 C 1.38243 * 120.11362 * 0.02562 * 17 16 15 19 19 C 1.38163 * 120.05438 * 359.97438 * 18 17 16 20 20 C 1.50708 * 120.02715 * 179.97438 * 19 18 17 21 21 N 1.46895 * 109.47356 * 260.02460 * 20 19 18 22 22 H 0.96997 * 120.00143 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47189 * 60.00276 * 9 7 2 24 24 H 1.09003 * 109.47078 * 299.99938 * 9 7 2 25 25 H 1.08998 * 109.47474 * 59.99817 * 10 9 7 26 26 H 1.09003 * 109.46669 * 299.99554 * 10 9 7 27 27 H 1.08993 * 109.47093 * 59.99777 * 11 10 9 28 28 H 1.09003 * 109.46925 * 299.99119 * 11 10 9 29 29 H 1.08998 * 109.47474 * 59.99538 * 12 11 10 30 30 H 1.08995 * 109.46823 * 299.99558 * 12 11 10 31 31 H 1.08000 * 120.03046 * 0.02562 * 15 14 13 32 32 H 1.07993 * 119.97844 * 179.72247 * 16 15 14 33 33 H 1.08004 * 119.94567 * 179.97438 * 17 16 15 34 34 H 1.08001 * 119.97538 * 179.97438 * 18 17 16 35 35 H 1.09002 * 109.47162 * 20.02710 * 20 19 18 36 36 H 1.09005 * 109.46612 * 140.02285 * 20 19 18 37 37 H 1.00901 * 110.99982 * 56.04326 * 21 20 19 38 38 H 1.00893 * 110.99973 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9872 -0.0012 12 6 2.4744 -6.1501 -0.0005 13 8 1.7599 -7.3877 -0.0005 14 6 2.5000 -8.5274 0.0005 15 6 3.8857 -8.4561 0.0011 16 6 4.6358 -9.6160 0.0016 17 6 4.0067 -10.8475 0.0022 18 6 2.6262 -10.9212 0.0017 19 6 1.8715 -9.7639 0.0012 20 6 0.3666 -9.8450 0.0000 21 7 -0.1343 -9.6317 -1.3643 22 1 -0.4850 0.8400 0.0004 23 1 0.6240 -2.5568 -0.8903 24 1 0.6246 -2.5571 0.8897 25 1 2.8719 -3.6044 0.8894 26 1 2.8718 -3.6044 -0.8906 27 1 0.8538 -5.0446 -0.8913 28 1 0.8533 -5.0452 0.8887 29 1 3.1005 -6.0924 0.8898 30 1 3.1016 -6.0923 -0.8901 31 1 4.3774 -7.4946 0.0010 32 1 5.7143 -9.5611 -0.0025 33 1 4.5949 -11.7533 0.0022 34 1 2.1373 -11.8842 0.0018 35 1 0.0555 -10.8286 0.3517 36 1 -0.0390 -9.0781 0.6600 37 1 0.2778 -10.2906 -2.0079 38 1 -1.1416 -9.6809 -1.3915 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395382809.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:28 Heat of formation + Delta-G solvation = -39.134219 kcal Electronic energy + Delta-G solvation = -17241.951240 eV Core-core repulsion = 14469.544244 eV Total energy + Delta-G solvation = -2772.406996 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.22402 -37.59739 -34.93327 -34.66101 -32.41331 -30.73551 -30.03522 -28.58977 -25.14668 -25.01006 -22.79184 -21.53768 -21.00885 -20.03324 -17.90589 -16.47086 -16.22908 -16.01704 -15.89970 -15.28784 -14.65207 -14.45080 -14.30239 -13.93210 -13.47929 -13.15538 -12.64586 -12.48331 -12.34955 -11.82404 -11.54860 -11.49585 -11.42063 -10.90173 -10.83981 -10.53590 -10.39243 -10.38955 -9.67353 -9.33411 -9.05180 -9.04976 -8.73673 -8.32892 -8.13487 -5.97807 -4.00352 1.18959 1.40486 3.33283 3.36285 3.39575 3.43069 3.65048 4.47748 4.57131 4.64286 4.77241 4.94403 5.10610 5.16922 5.26302 5.34072 5.37916 5.43773 5.48835 5.64044 5.64935 5.94045 6.05163 6.12246 6.26094 6.31801 6.40301 6.46176 6.73777 6.74899 6.89935 7.01313 7.11581 7.33603 7.57417 7.70106 7.84618 8.02545 8.44411 9.06840 9.63540 11.13577 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.038688 B = 0.003414 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.558166 B = 8198.868420 C = 8820.362220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.107 4.107 11 C -0.115 4.115 12 C 0.059 3.941 13 O -0.300 6.300 14 C 0.161 3.839 15 C -0.215 4.215 16 C -0.078 4.078 17 C -0.169 4.169 18 C -0.079 4.079 19 C -0.129 4.129 20 C 0.114 3.886 21 N -0.840 5.840 22 H 0.260 0.740 23 H 0.017 0.983 24 H 0.017 0.983 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.130 0.870 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.029 0.971 36 H 0.083 0.917 37 H 0.337 0.663 38 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.902 -22.899 -0.153 23.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.153 4.153 12 C -0.016 4.016 13 O -0.212 6.212 14 C 0.114 3.886 15 C -0.234 4.234 16 C -0.096 4.096 17 C -0.187 4.187 18 C -0.098 4.098 19 C -0.130 4.130 20 C -0.016 4.016 21 N -0.370 5.370 22 H 0.070 0.930 23 H 0.036 0.964 24 H 0.035 0.965 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.148 0.852 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.048 0.952 36 H 0.102 0.898 37 H 0.149 0.851 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.850 -22.005 -0.079 22.534 hybrid contribution 0.405 0.068 0.073 0.417 sum 5.255 -21.937 -0.006 22.558 Atomic orbital electron populations 1.69967 1.06053 1.26582 1.50855 1.25032 0.94855 0.99263 0.95372 0.86595 0.79827 0.83490 0.78088 1.20668 1.21231 1.19897 1.21264 0.93023 0.91121 1.50563 0.92709 1.19089 0.93963 0.91087 0.97417 1.21584 0.99249 0.93201 1.00425 1.21668 0.97985 0.92392 1.03221 1.23077 0.96045 0.81677 1.00807 1.86184 1.35436 1.12451 1.87142 1.18869 0.89639 0.86800 0.93271 1.21362 0.92985 0.99942 1.09076 1.20941 0.99625 0.91985 0.97066 1.20941 0.94444 0.97608 1.05729 1.20838 0.93820 0.96859 0.98243 1.19144 0.95700 0.90498 1.07665 1.20465 0.90459 0.99469 0.91197 1.58582 1.11541 1.59768 1.07071 0.93002 0.96432 0.96486 0.93234 0.93191 0.91194 0.91456 0.92434 0.92288 0.85242 0.86004 0.86213 0.85993 0.95247 0.89828 0.85078 0.84520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.85 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.96 9.11 -34.44 -0.31 -15.28 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.20 5.15 -26.73 -0.14 -2.34 16 11 C -0.12 -2.04 5.58 -26.73 -0.15 -2.19 16 12 C 0.06 0.89 4.74 37.16 0.18 1.06 16 13 O -0.30 -4.71 9.37 -19.42 -0.18 -4.89 16 14 C 0.16 2.26 6.66 -39.22 -0.26 2.00 16 15 C -0.21 -2.68 9.04 -39.43 -0.36 -3.04 16 16 C -0.08 -0.82 10.04 -39.60 -0.40 -1.22 16 17 C -0.17 -1.65 10.04 -39.56 -0.40 -2.04 16 18 C -0.08 -0.80 9.67 -39.61 -0.38 -1.18 16 19 C -0.13 -1.57 5.41 -104.47 -0.56 -2.13 16 20 C 0.11 1.25 6.58 -4.98 -0.03 1.22 16 21 N -0.84 -8.90 9.61 -11.41 -0.11 -9.01 16 22 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 23 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 27 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.06 0.81 7.66 -51.93 -0.40 0.41 16 30 H 0.06 0.85 7.66 -51.93 -0.40 0.45 16 31 H 0.13 1.51 6.30 -52.49 -0.33 1.18 16 32 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 34 H 0.12 0.93 8.04 -52.49 -0.42 0.50 16 35 H 0.03 0.26 8.00 -51.93 -0.42 -0.16 16 36 H 0.08 1.03 7.85 -51.93 -0.41 0.63 16 37 H 0.34 3.10 8.99 -39.29 -0.35 2.74 16 38 H 0.34 2.95 9.08 -39.30 -0.36 2.60 16 LS Contribution 320.18 15.07 4.83 4.83 Total: -1.00 -31.72 320.18 -8.81 -40.53 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -6.00 Total: 1.45 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: -3.05 Total: -23.19 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.63 Total: -35.56 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: -0.18 Total: -4.89 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.72 -8.81 -40.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395382809.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.399 kcal (2) G-P(sol) polarization free energy of solvation -31.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds