Wall clock time and date at job start Mon Mar 30 2020 07:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86791 * 120.00058 * 2 1 4 4 H 1.48502 * 109.47426 * 270.00277 * 3 2 1 5 5 H 1.48500 * 109.47168 * 30.00135 * 3 2 1 6 6 H 1.48504 * 109.47197 * 150.00446 * 3 2 1 7 7 C 1.37876 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00375 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99994 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46936 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46786 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46786 * 180.02562 * 11 10 9 13 13 O 1.42903 * 109.47006 * 179.97438 * 12 11 10 14 14 C 1.35899 * 116.99930 * 180.02562 * 13 12 11 15 15 C 1.38747 * 120.05586 * 359.97438 * 14 13 12 16 16 C 1.38125 * 119.94590 * 180.02562 * 15 14 13 17 17 C 1.38289 * 120.05159 * 359.97438 * 16 15 14 18 18 C 1.38243 * 120.11362 * 0.02562 * 17 16 15 19 19 C 1.38163 * 120.05438 * 359.97438 * 18 17 16 20 20 C 1.50708 * 120.02715 * 179.97438 * 19 18 17 21 21 N 1.46895 * 109.47356 * 260.02460 * 20 19 18 22 22 H 0.96997 * 120.00143 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47189 * 60.00276 * 9 7 2 24 24 H 1.09003 * 109.47078 * 299.99938 * 9 7 2 25 25 H 1.08998 * 109.47474 * 59.99817 * 10 9 7 26 26 H 1.09003 * 109.46669 * 299.99554 * 10 9 7 27 27 H 1.08993 * 109.47093 * 59.99777 * 11 10 9 28 28 H 1.09003 * 109.46925 * 299.99119 * 11 10 9 29 29 H 1.08998 * 109.47474 * 59.99538 * 12 11 10 30 30 H 1.08995 * 109.46823 * 299.99558 * 12 11 10 31 31 H 1.08000 * 120.03046 * 0.02562 * 15 14 13 32 32 H 1.07993 * 119.97844 * 179.72247 * 16 15 14 33 33 H 1.08004 * 119.94567 * 179.97438 * 17 16 15 34 34 H 1.08001 * 119.97538 * 179.97438 * 18 17 16 35 35 H 1.09002 * 109.47162 * 20.02710 * 20 19 18 36 36 H 1.09005 * 109.46612 * 140.02285 * 20 19 18 37 37 H 1.00901 * 110.99982 * 56.04326 * 21 20 19 38 38 H 1.00893 * 110.99973 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9872 -0.0012 12 6 2.4744 -6.1501 -0.0005 13 8 1.7599 -7.3877 -0.0005 14 6 2.5000 -8.5274 0.0005 15 6 3.8857 -8.4561 0.0011 16 6 4.6358 -9.6160 0.0016 17 6 4.0067 -10.8475 0.0022 18 6 2.6262 -10.9212 0.0017 19 6 1.8715 -9.7639 0.0012 20 6 0.3666 -9.8450 0.0000 21 7 -0.1343 -9.6317 -1.3643 22 1 -0.4850 0.8400 0.0004 23 1 0.6240 -2.5568 -0.8903 24 1 0.6246 -2.5571 0.8897 25 1 2.8719 -3.6044 0.8894 26 1 2.8718 -3.6044 -0.8906 27 1 0.8538 -5.0446 -0.8913 28 1 0.8533 -5.0452 0.8887 29 1 3.1005 -6.0924 0.8898 30 1 3.1016 -6.0923 -0.8901 31 1 4.3774 -7.4946 0.0010 32 1 5.7143 -9.5611 -0.0025 33 1 4.5949 -11.7533 0.0022 34 1 2.1373 -11.8842 0.0018 35 1 0.0555 -10.8286 0.3517 36 1 -0.0390 -9.0781 0.6600 37 1 0.2778 -10.2906 -2.0079 38 1 -1.1416 -9.6809 -1.3915 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395382809.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:27 Heat of formation + Delta-G solvation = -59.165738 kcal Electronic energy + Delta-G solvation = -17242.819872 eV Core-core repulsion = 14469.544244 eV Total energy + Delta-G solvation = -2773.275628 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.17052 -38.61255 -36.47207 -35.71896 -34.40098 -31.58322 -31.24917 -30.07062 -26.90182 -25.84709 -24.25493 -22.54047 -22.29785 -21.55433 -18.90528 -18.43590 -17.37727 -17.19913 -16.83840 -16.50990 -16.11143 -15.65101 -15.31732 -15.15411 -14.64499 -14.35472 -13.95875 -13.78810 -13.68176 -13.34245 -12.99590 -12.96940 -12.63844 -12.41688 -12.31167 -12.16591 -11.78548 -11.61882 -11.39304 -11.35081 -11.13135 -10.55680 -9.87403 -9.52438 -9.05852 -8.19969 -6.31676 0.36606 0.54046 1.40334 1.42153 1.53257 2.28013 2.42653 2.81643 3.13077 3.77238 3.83663 3.92008 3.97009 4.06728 4.22324 4.30022 4.34984 4.37859 4.52825 4.59397 4.63207 4.69569 4.79637 4.87174 5.09988 5.13216 5.22996 5.25376 5.45355 5.50182 5.52380 5.60125 5.73810 5.85166 5.93041 6.23758 6.25970 6.54151 6.65330 6.85688 7.37752 8.92189 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.038688 B = 0.003414 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.558166 B = 8198.868420 C = 8820.362220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.022 3.978 10 C -0.093 4.093 11 C -0.106 4.106 12 C 0.069 3.931 13 O -0.320 6.320 14 C 0.126 3.874 15 C -0.228 4.228 16 C -0.083 4.083 17 C -0.164 4.164 18 C -0.078 4.078 19 C -0.142 4.142 20 C 0.116 3.884 21 N -0.855 5.855 22 H 0.264 0.736 23 H -0.010 1.010 24 H -0.009 1.009 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.131 0.869 32 H 0.146 0.854 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.345 0.655 38 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.905 -24.278 -0.181 25.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.583 4.583 8 H 0.081 0.919 9 C -0.015 4.015 10 C -0.131 4.131 11 C -0.144 4.144 12 C -0.006 4.006 13 O -0.234 6.234 14 C 0.080 3.920 15 C -0.247 4.247 16 C -0.101 4.101 17 C -0.182 4.182 18 C -0.096 4.096 19 C -0.143 4.143 20 C -0.014 4.014 21 N -0.386 5.386 22 H 0.072 0.928 23 H 0.009 0.991 24 H 0.009 0.991 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.149 0.851 32 H 0.164 0.836 33 H 0.168 0.832 34 H 0.168 0.832 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.158 0.842 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 6.863 -23.411 -0.110 24.396 hybrid contribution -0.235 0.385 0.076 0.457 sum 6.628 -23.026 -0.034 23.961 Atomic orbital electron populations 1.70109 1.07915 1.27811 1.51693 1.26038 0.95801 1.03565 0.94715 0.85406 0.78665 0.78202 0.78526 1.19728 1.20774 1.18541 1.21729 0.93677 0.92315 1.50532 0.91881 1.19017 0.94493 0.93142 0.94842 1.21348 0.98074 0.92407 1.01238 1.21443 0.98110 0.92470 1.02341 1.22818 0.94929 0.81027 1.01782 1.86114 1.36222 1.12962 1.88079 1.19218 0.90467 0.86631 0.95665 1.21524 0.92613 1.00983 1.09569 1.21288 1.00869 0.91666 0.96314 1.21368 0.94611 0.98456 1.03721 1.21190 0.94169 0.97236 0.97040 1.19436 0.96421 0.90640 1.07790 1.20414 0.90020 0.99944 0.91030 1.58539 1.12401 1.60456 1.07246 0.92761 0.99123 0.99059 0.92251 0.92356 0.92307 0.92192 0.91255 0.91481 0.85116 0.83649 0.83212 0.83212 0.92817 0.92074 0.84173 0.83551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.18 13.29 21.45 0.28 -57.89 16 2 C 0.00 -0.22 5.46 84.65 0.46 0.25 16 3 Si 0.97 44.78 29.54 68.60 2.03 46.80 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 7 C -0.54 -31.59 9.11 25.60 0.23 -31.36 16 8 H 0.06 3.47 7.74 -2.91 -0.02 3.44 16 9 C 0.02 1.20 4.97 29.85 0.15 1.35 16 10 C -0.09 -3.87 5.15 30.60 0.16 -3.71 16 11 C -0.11 -3.84 5.58 30.60 0.17 -3.67 16 12 C 0.07 2.09 4.74 71.98 0.34 2.43 16 13 O -0.32 -10.21 9.37 -92.41 -0.87 -11.07 16 14 C 0.13 3.49 6.66 22.50 0.15 3.64 16 15 C -0.23 -5.44 9.04 22.36 0.20 -5.24 16 16 C -0.08 -1.55 10.04 22.25 0.22 -1.33 16 17 C -0.16 -2.65 10.04 22.28 0.22 -2.42 16 18 C -0.08 -1.36 9.67 22.25 0.22 -1.15 16 19 C -0.14 -3.29 5.41 -19.77 -0.11 -3.40 16 20 C 0.12 2.47 6.58 85.56 0.56 3.03 16 21 N -0.85 -17.71 9.61 -190.00 -1.83 -19.54 16 22 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 23 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 24 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 25 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 26 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.07 1.90 7.66 -2.39 -0.02 1.89 16 30 H 0.07 1.89 7.66 -2.39 -0.02 1.87 16 31 H 0.13 2.94 6.30 -2.91 -0.02 2.92 16 32 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 33 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 34 H 0.15 1.71 8.04 -2.91 -0.02 1.69 16 35 H 0.05 0.85 8.00 -2.39 -0.02 0.84 16 36 H 0.06 1.55 7.85 -2.38 -0.02 1.53 16 37 H 0.35 6.00 8.99 -89.69 -0.81 5.19 16 38 H 0.35 5.94 9.08 -89.70 -0.81 5.12 16 Total: -1.00 -69.16 320.18 2.03 -67.13 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -0.57 Total: 16.14 kcal Atomic # 6 Polarization: -44.57 SS G_CDS: 2.98 Total: -41.58 kcal Atomic # 7 Polarization: -75.88 SS G_CDS: -1.54 Total: -77.43 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: -0.87 Total: -11.07 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -69.16 2.03 -67.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395382809.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.968 kcal (2) G-P(sol) polarization free energy of solvation -69.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds