Wall clock time and date at job start Mon Mar 30 2020 07:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86798 * 119.99895 * 2 1 4 4 H 1.48498 * 109.46821 * 270.00284 * 3 2 1 5 5 H 1.48501 * 109.47257 * 29.99856 * 3 2 1 6 6 H 1.48498 * 109.47318 * 150.00210 * 3 2 1 7 7 C 1.39941 * 119.99899 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99869 * 197.84807 * 7 2 1 9 9 C 1.41399 * 120.00319 * 17.84028 * 7 2 1 10 10 C 1.40712 * 120.24577 * 204.38609 * 9 7 2 11 11 C 1.37615 * 119.74605 * 180.02562 * 10 9 7 12 12 C 1.38639 * 120.24435 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.74557 * 179.97438 * 12 11 10 14 14 O 1.42901 * 109.46919 * 90.00503 * 13 12 11 15 15 C 1.42900 * 113.99945 * 179.97438 * 14 13 12 16 16 C 1.52998 * 109.47177 * 179.97438 * 15 14 13 17 17 C 1.53000 * 109.47151 * 180.02562 * 16 15 14 18 18 C 1.53000 * 109.47164 * 180.02562 * 17 16 15 19 19 N 1.46900 * 109.47298 * 180.02562 * 18 17 16 20 20 C 1.38631 * 120.50645 * 0.26133 * 12 11 10 21 21 C 1.37622 * 120.24099 * 359.44149 * 20 12 11 22 22 H 0.96994 * 119.99970 * 359.97438 * 1 2 3 23 23 H 1.07998 * 120.12698 * 0.02562 * 10 9 7 24 24 H 1.08000 * 119.87918 * 180.02562 * 11 10 9 25 25 H 1.09001 * 109.47229 * 210.00062 * 13 12 11 26 26 H 1.08996 * 109.47414 * 330.00379 * 13 12 11 27 27 H 1.08997 * 109.47726 * 300.00179 * 15 14 13 28 28 H 1.09004 * 109.46980 * 60.00149 * 15 14 13 29 29 H 1.08995 * 109.47453 * 300.00349 * 16 15 14 30 30 H 1.09004 * 109.46807 * 60.00333 * 16 15 14 31 31 H 1.08997 * 109.47720 * 300.00449 * 17 16 15 32 32 H 1.09004 * 109.47011 * 60.00435 * 17 16 15 33 33 H 1.09008 * 109.47312 * 300.00056 * 18 17 16 34 34 H 1.08996 * 109.47218 * 59.99816 * 18 17 16 35 35 H 1.00900 * 110.99965 * 179.97438 * 19 18 17 36 36 H 1.00899 * 110.99939 * 303.95056 * 19 18 17 37 37 H 1.07998 * 119.87837 * 179.69772 * 20 12 11 38 38 H 1.08002 * 120.12182 * 180.28267 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4896 2.0464 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4402 0.7000 7 6 2.0080 -1.2119 -0.0005 8 1 3.0490 -1.2346 0.2861 9 6 1.3520 -2.4069 -0.3762 10 6 1.8258 -3.6499 0.0825 11 6 1.1798 -4.8065 -0.2899 12 6 0.0666 -4.7502 -1.1143 13 6 -0.6318 -6.0239 -1.5156 14 8 -1.6493 -6.3305 -0.5602 15 6 -2.3766 -7.5261 -0.8492 16 6 -3.4332 -7.7547 0.2335 17 6 -4.2115 -9.0352 -0.0756 18 6 -5.2684 -9.2634 1.0068 19 7 -6.0153 -10.4931 0.7104 20 6 -0.4054 -3.5316 -1.5770 21 6 0.2212 -2.3619 -1.2124 22 1 -0.4850 0.8400 0.0004 23 1 2.6931 -3.6960 0.7245 24 1 1.5414 -5.7617 0.0613 25 1 -1.0838 -5.8960 -2.4992 26 1 0.0909 -6.8390 -1.5510 27 1 -2.8648 -7.4291 -1.8189 28 1 -1.6903 -8.3727 -0.8711 29 1 -2.9447 -7.8520 1.2030 30 1 -4.1196 -6.9082 0.2558 31 1 -4.6999 -8.9385 -1.0452 32 1 -3.5248 -9.8814 -0.0975 33 1 -4.7803 -9.3601 1.9767 34 1 -5.9550 -8.4171 1.0284 35 1 -6.7198 -10.6663 1.4117 36 1 -6.4241 -10.4546 -0.2113 37 1 -1.2706 -3.4999 -2.2227 38 1 -0.1509 -1.4133 -1.5704 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399119214.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:40 Heat of formation + Delta-G solvation = -52.982312 kcal Electronic energy + Delta-G solvation = -17000.012540 eV Core-core repulsion = 14227.005046 eV Total energy + Delta-G solvation = -2773.007495 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.12978 -37.13816 -35.99426 -33.79871 -32.48692 -30.43189 -29.26057 -27.48255 -26.22247 -23.47377 -22.41562 -21.22574 -20.97860 -19.90990 -17.30072 -16.45299 -16.09845 -15.64069 -15.41192 -15.06835 -14.85906 -14.28220 -13.87013 -13.56145 -13.10973 -12.63334 -12.42228 -11.95663 -11.83562 -11.81173 -11.54316 -11.40954 -11.13320 -11.01940 -10.75677 -10.71357 -10.52822 -10.27455 -9.59176 -9.39384 -9.18969 -9.07510 -9.02003 -7.45659 -7.33764 -6.77261 -4.36883 2.69498 3.06230 3.09572 3.10330 3.14351 3.91895 4.01642 4.42250 4.68306 4.81786 4.93087 5.20913 5.24418 5.44526 5.56417 5.64700 5.70824 5.76788 5.79614 5.84434 5.92821 6.19070 6.20125 6.26349 6.39189 6.41545 6.79363 6.95627 7.06759 7.09327 7.29017 7.37209 7.61666 7.71936 7.89077 8.05063 8.13135 8.29353 8.63681 8.88369 8.97142 10.16978 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.042625 B = 0.003285 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.735062 B = 8521.438753 C = 8829.710885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.461 4.461 8 H 0.079 0.921 9 C 0.115 3.885 10 C -0.230 4.230 11 C -0.070 4.070 12 C -0.223 4.223 13 C 0.129 3.871 14 O -0.384 6.384 15 C 0.060 3.940 16 C -0.118 4.118 17 C -0.115 4.115 18 C 0.060 3.940 19 N -0.854 5.854 20 C -0.080 4.080 21 C -0.170 4.170 22 H 0.281 0.719 23 H 0.093 0.907 24 H 0.087 0.913 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.040 0.960 28 H 0.041 0.959 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.028 0.972 35 H 0.341 0.659 36 H 0.339 0.661 37 H 0.087 0.913 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.807 -11.325 -1.335 13.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.490 4.490 8 H 0.097 0.903 9 C 0.112 3.888 10 C -0.249 4.249 11 C -0.088 4.088 12 C -0.225 4.225 13 C 0.054 3.946 14 O -0.303 6.303 15 C -0.017 4.017 16 C -0.156 4.156 17 C -0.153 4.153 18 C -0.071 4.071 19 N -0.384 5.384 20 C -0.099 4.099 21 C -0.189 4.189 22 H 0.092 0.908 23 H 0.111 0.889 24 H 0.105 0.895 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.046 0.954 35 H 0.153 0.847 36 H 0.151 0.849 37 H 0.105 0.895 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.339 -11.408 -1.070 13.607 hybrid contribution -0.526 1.249 -0.224 1.374 sum -7.865 -10.159 -1.294 12.913 Atomic orbital electron populations 1.69841 1.07619 1.29276 1.34705 1.25945 0.94734 1.01398 0.92249 0.86295 0.80491 0.80505 0.79328 1.19246 1.20302 1.18588 1.19634 0.98177 0.91274 1.39916 0.90331 1.17658 0.90952 0.92048 0.88120 1.20959 1.04054 0.92798 1.07129 1.20373 0.95371 0.96506 0.96546 1.18779 1.00802 0.92456 1.10416 1.21099 0.88082 0.95183 0.90269 1.88090 1.50048 1.41558 1.50642 1.22364 0.93661 0.88314 0.97346 1.21454 0.97309 0.97354 0.99463 1.21481 0.97681 0.97806 0.98312 1.21810 0.95632 0.90123 0.99520 1.58724 1.33554 1.38570 1.07503 1.20528 0.97696 0.92582 0.99103 1.21294 0.99668 0.96639 1.01320 0.90810 0.88903 0.89468 0.94437 0.94463 0.94162 0.94049 0.91024 0.91231 0.92144 0.91055 0.90829 0.95363 0.84713 0.84867 0.89512 0.86368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.66 10.95 55.55 0.61 -20.05 16 2 C 0.07 1.90 5.14 -17.34 -0.09 1.81 16 3 Si 0.91 18.71 29.60 -169.99 -5.03 13.68 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 6 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.46 -12.36 9.05 -37.74 -0.34 -12.70 16 8 H 0.08 2.02 7.91 -52.49 -0.42 1.60 16 9 C 0.11 3.13 5.57 -106.83 -0.60 2.53 16 10 C -0.23 -5.81 9.80 -38.88 -0.38 -6.20 16 11 C -0.07 -1.63 9.67 -39.66 -0.38 -2.01 16 12 C -0.22 -5.15 5.53 -104.33 -0.58 -5.73 16 13 C 0.13 2.47 6.05 36.01 0.22 2.68 16 14 O -0.38 -7.37 10.33 -35.23 -0.36 -7.74 16 15 C 0.06 0.86 5.94 37.16 0.22 1.08 16 16 C -0.12 -1.44 5.58 -26.73 -0.15 -1.59 16 17 C -0.11 -1.12 5.47 -26.73 -0.15 -1.27 16 18 C 0.06 0.53 6.79 -3.82 -0.03 0.51 16 19 N -0.85 -6.76 9.62 -10.37 -0.10 -6.86 16 20 C -0.08 -1.96 9.67 -39.66 -0.38 -2.34 16 21 C -0.17 -4.53 8.70 -38.87 -0.34 -4.86 16 22 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 23 H 0.09 2.20 8.06 -52.49 -0.42 1.77 16 24 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 25 H 0.04 0.66 8.08 -51.93 -0.42 0.24 16 26 H 0.04 0.65 8.08 -51.93 -0.42 0.23 16 27 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.68 8.14 -51.92 -0.42 0.25 16 34 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.34 2.13 9.08 -39.29 -0.36 1.77 16 36 H 0.34 2.27 8.99 -39.29 -0.35 1.91 16 37 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 38 H 0.12 3.22 6.16 -52.49 -0.32 2.90 16 LS Contribution 320.69 15.07 4.83 4.83 Total: -1.00 -28.95 320.69 -9.10 -38.04 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -6.07 Total: 6.18 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: -2.97 Total: -28.09 kcal Atomic # 7 Polarization: -27.42 SS G_CDS: 0.51 Total: -26.91 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: -0.36 Total: -7.74 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.95 -9.10 -38.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399119214.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.938 kcal (2) G-P(sol) polarization free energy of solvation -28.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds