Wall clock time and date at job start Mon Mar 30 2020 07:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86798 * 119.99895 * 2 1 4 4 H 1.48498 * 109.46821 * 270.00284 * 3 2 1 5 5 H 1.48501 * 109.47257 * 29.99856 * 3 2 1 6 6 H 1.48498 * 109.47318 * 150.00210 * 3 2 1 7 7 C 1.39941 * 119.99899 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99869 * 197.84807 * 7 2 1 9 9 C 1.41399 * 120.00319 * 17.84028 * 7 2 1 10 10 C 1.40712 * 120.24577 * 204.38609 * 9 7 2 11 11 C 1.37615 * 119.74605 * 180.02562 * 10 9 7 12 12 C 1.38639 * 120.24435 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.74557 * 179.97438 * 12 11 10 14 14 O 1.42901 * 109.46919 * 90.00503 * 13 12 11 15 15 C 1.42900 * 113.99945 * 179.97438 * 14 13 12 16 16 C 1.52998 * 109.47177 * 179.97438 * 15 14 13 17 17 C 1.53000 * 109.47151 * 180.02562 * 16 15 14 18 18 C 1.53000 * 109.47164 * 180.02562 * 17 16 15 19 19 N 1.46900 * 109.47298 * 180.02562 * 18 17 16 20 20 C 1.38631 * 120.50645 * 0.26133 * 12 11 10 21 21 C 1.37622 * 120.24099 * 359.44149 * 20 12 11 22 22 H 0.96994 * 119.99970 * 359.97438 * 1 2 3 23 23 H 1.07998 * 120.12698 * 0.02562 * 10 9 7 24 24 H 1.08000 * 119.87918 * 180.02562 * 11 10 9 25 25 H 1.09001 * 109.47229 * 210.00062 * 13 12 11 26 26 H 1.08996 * 109.47414 * 330.00379 * 13 12 11 27 27 H 1.08997 * 109.47726 * 300.00179 * 15 14 13 28 28 H 1.09004 * 109.46980 * 60.00149 * 15 14 13 29 29 H 1.08995 * 109.47453 * 300.00349 * 16 15 14 30 30 H 1.09004 * 109.46807 * 60.00333 * 16 15 14 31 31 H 1.08997 * 109.47720 * 300.00449 * 17 16 15 32 32 H 1.09004 * 109.47011 * 60.00435 * 17 16 15 33 33 H 1.09008 * 109.47312 * 300.00056 * 18 17 16 34 34 H 1.08996 * 109.47218 * 59.99816 * 18 17 16 35 35 H 1.00900 * 110.99965 * 179.97438 * 19 18 17 36 36 H 1.00899 * 110.99939 * 303.95056 * 19 18 17 37 37 H 1.07998 * 119.87837 * 179.69772 * 20 12 11 38 38 H 1.08002 * 120.12182 * 180.28267 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4896 2.0464 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4402 0.7000 7 6 2.0080 -1.2119 -0.0005 8 1 3.0490 -1.2346 0.2861 9 6 1.3520 -2.4069 -0.3762 10 6 1.8258 -3.6499 0.0825 11 6 1.1798 -4.8065 -0.2899 12 6 0.0666 -4.7502 -1.1143 13 6 -0.6318 -6.0239 -1.5156 14 8 -1.6493 -6.3305 -0.5602 15 6 -2.3766 -7.5261 -0.8492 16 6 -3.4332 -7.7547 0.2335 17 6 -4.2115 -9.0352 -0.0756 18 6 -5.2684 -9.2634 1.0068 19 7 -6.0153 -10.4931 0.7104 20 6 -0.4054 -3.5316 -1.5770 21 6 0.2212 -2.3619 -1.2124 22 1 -0.4850 0.8400 0.0004 23 1 2.6931 -3.6960 0.7245 24 1 1.5414 -5.7617 0.0613 25 1 -1.0838 -5.8960 -2.4992 26 1 0.0909 -6.8390 -1.5510 27 1 -2.8648 -7.4291 -1.8189 28 1 -1.6903 -8.3727 -0.8711 29 1 -2.9447 -7.8520 1.2030 30 1 -4.1196 -6.9082 0.2558 31 1 -4.6999 -8.9385 -1.0452 32 1 -3.5248 -9.8814 -0.0975 33 1 -4.7803 -9.3601 1.9767 34 1 -5.9550 -8.4171 1.0284 35 1 -6.7198 -10.6663 1.4117 36 1 -6.4241 -10.4546 -0.2113 37 1 -1.2706 -3.4999 -2.2227 38 1 -0.1509 -1.4133 -1.5704 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399119214.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:40 Heat of formation + Delta-G solvation = -70.601042 kcal Electronic energy + Delta-G solvation = -17000.776546 eV Core-core repulsion = 14227.005046 eV Total energy + Delta-G solvation = -2773.771500 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.77345 -38.64157 -36.90916 -35.63654 -33.49187 -32.16976 -31.18789 -28.90013 -27.54556 -25.20150 -23.34475 -22.91854 -22.16852 -21.68028 -19.25014 -17.49390 -17.30175 -17.18851 -16.56877 -16.48695 -15.95202 -15.69847 -15.39783 -15.01541 -14.59170 -14.11591 -13.83617 -13.75936 -13.46010 -13.05152 -12.79403 -12.72502 -12.61045 -12.45770 -12.31231 -11.98268 -11.80513 -11.62106 -11.42775 -11.27638 -11.04423 -10.45138 -9.64052 -9.40518 -9.28847 -8.66378 -6.37440 0.86712 1.12478 1.37644 1.49401 1.51701 2.19841 2.58107 3.02830 3.66743 3.81907 3.95872 4.03595 4.25692 4.27659 4.33090 4.42177 4.48618 4.57558 4.59375 4.63028 4.68836 4.78804 4.90999 5.00246 5.02318 5.13986 5.29221 5.34341 5.35505 5.43573 5.68081 5.91838 6.07543 6.20403 6.20533 6.35172 6.44541 6.58657 6.67095 6.90874 7.00485 8.30771 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.042625 B = 0.003285 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.735062 B = 8521.438753 C = 8829.710885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.033 3.967 3 Si 0.987 3.013 4 H -0.261 1.261 5 H -0.267 1.267 6 H -0.257 1.257 7 C -0.498 4.498 8 H 0.078 0.922 9 C 0.082 3.918 10 C -0.247 4.247 11 C -0.073 4.073 12 C -0.221 4.221 13 C 0.133 3.867 14 O -0.413 6.413 15 C 0.055 3.945 16 C -0.114 4.114 17 C -0.105 4.105 18 C 0.061 3.939 19 N -0.860 5.860 20 C -0.088 4.088 21 C -0.195 4.195 22 H 0.289 0.711 23 H 0.100 0.900 24 H 0.116 0.884 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.030 0.970 35 H 0.350 0.650 36 H 0.347 0.653 37 H 0.105 0.895 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.230 -12.432 -1.711 15.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.182 4.182 3 Si 0.807 3.193 4 H -0.185 1.185 5 H -0.192 1.192 6 H -0.181 1.181 7 C -0.527 4.527 8 H 0.096 0.904 9 C 0.079 3.921 10 C -0.266 4.266 11 C -0.091 4.091 12 C -0.222 4.222 13 C 0.057 3.943 14 O -0.334 6.334 15 C -0.022 4.022 16 C -0.152 4.152 17 C -0.143 4.143 18 C -0.070 4.070 19 N -0.391 5.391 20 C -0.106 4.106 21 C -0.214 4.214 22 H 0.100 0.900 23 H 0.118 0.882 24 H 0.134 0.866 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.048 0.952 35 H 0.164 0.836 36 H 0.160 0.840 37 H 0.123 0.877 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.778 -12.545 -1.448 14.831 hybrid contribution -0.483 1.422 -0.113 1.506 sum -8.261 -11.123 -1.561 13.943 Atomic orbital electron populations 1.69894 1.09151 1.30695 1.35200 1.26844 0.95516 1.04755 0.91116 0.85141 0.79020 0.75561 0.79597 1.18544 1.19181 1.18100 1.19887 0.98453 0.92487 1.41896 0.90419 1.18029 0.91800 0.93209 0.89013 1.21190 1.04720 0.93077 1.07643 1.20724 0.95201 0.97102 0.96115 1.19272 1.00433 0.93849 1.08665 1.21033 0.88726 0.93742 0.90776 1.88015 1.50431 1.43934 1.51001 1.22634 0.93992 0.86900 0.98630 1.21431 0.96845 0.98328 0.98572 1.21382 0.97592 0.96281 0.99045 1.21742 0.95589 0.90700 0.98981 1.58698 1.34140 1.37862 1.08391 1.20801 0.98027 0.92550 0.99227 1.21285 1.00583 0.96976 1.02556 0.90026 0.88202 0.86558 0.92753 0.92255 0.92726 0.92562 0.91865 0.92049 0.91180 0.91081 0.91334 0.95202 0.83649 0.84019 0.87695 0.87947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.21 10.95 21.83 0.24 -43.97 16 2 C 0.03 1.69 5.14 85.25 0.44 2.12 16 3 Si 0.99 38.68 29.60 68.60 2.03 40.71 16 4 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 5 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 6 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 7 C -0.50 -27.58 9.05 23.46 0.21 -27.37 16 8 H 0.08 4.13 7.91 -2.91 -0.02 4.11 16 9 C 0.08 4.60 5.57 -21.29 -0.12 4.48 16 10 C -0.25 -12.65 9.80 22.73 0.22 -12.43 16 11 C -0.07 -3.37 9.67 22.22 0.21 -3.15 16 12 C -0.22 -9.93 5.53 -19.67 -0.11 -10.04 16 13 C 0.13 4.72 6.05 71.24 0.43 5.15 16 14 O -0.41 -15.02 10.33 -148.98 -1.54 -16.56 16 15 C 0.05 1.42 5.94 71.98 0.43 1.84 16 16 C -0.11 -2.58 5.58 30.59 0.17 -2.41 16 17 C -0.11 -1.82 5.47 30.59 0.17 -1.66 16 18 C 0.06 0.98 6.79 86.30 0.59 1.56 16 19 N -0.86 -11.89 9.62 -186.71 -1.80 -13.69 16 20 C -0.09 -4.27 9.67 22.22 0.21 -4.06 16 21 C -0.19 -10.68 8.70 22.73 0.20 -10.48 16 22 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 23 H 0.10 4.81 8.06 -2.91 -0.02 4.78 16 24 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 25 H 0.05 1.75 8.08 -2.39 -0.02 1.73 16 26 H 0.06 1.85 8.08 -2.39 -0.02 1.83 16 27 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 29 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.35 3.73 9.08 -89.69 -0.81 2.92 16 36 H 0.35 3.89 8.99 -89.69 -0.81 3.08 16 37 H 0.10 4.59 8.06 -2.91 -0.02 4.57 16 38 H 0.10 5.83 6.16 -2.91 -0.02 5.81 16 Total: -1.00 -62.86 320.69 1.42 -61.45 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: -0.57 Total: 28.50 kcal Atomic # 6 Polarization: -59.49 SS G_CDS: 3.06 Total: -56.44 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: -1.56 Total: -57.66 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -1.54 Total: -16.56 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.71 kcal Total: -62.86 1.42 -61.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399119214.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.152 kcal (2) G-P(sol) polarization free energy of solvation -62.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds