Wall clock time and date at job start Mon Mar 30 2020 07:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86300 * 109.46759 * 2 1 4 4 C 1.86291 * 109.47224 * 239.99669 * 2 1 3 5 5 C 1.86306 * 109.47129 * 119.99543 * 2 1 3 6 6 N 1.46493 * 109.46830 * 60.00065 * 5 2 1 7 7 C 1.39689 * 119.99965 * 95.00259 * 6 5 2 8 8 C 1.39342 * 119.95090 * 0.02562 * 7 6 5 9 9 C 1.38473 * 120.42636 * 180.02562 * 8 7 6 10 10 C 1.37697 * 120.32336 * 359.97438 * 9 8 7 11 11 C 1.40746 * 119.89465 * 359.97438 * 10 9 8 12 12 C 1.41404 * 120.21074 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99371 * 24.37889 * 12 11 10 14 14 C 1.39933 * 120.00117 * 204.38210 * 12 11 10 15 15 N 1.30828 * 119.99831 * 17.83940 * 14 12 11 16 16 Si 1.86796 * 119.99788 * 197.83665 * 14 12 11 17 17 H 1.48501 * 109.47082 * 94.69103 * 16 14 12 18 18 H 1.48500 * 109.46974 * 214.69005 * 16 14 12 19 19 H 1.48501 * 109.47492 * 334.69201 * 16 14 12 20 20 C 1.38280 * 119.95305 * 179.97438 * 7 6 5 21 21 H 1.09002 * 109.47218 * 299.99993 * 1 2 3 22 22 H 1.08989 * 109.47253 * 60.00440 * 1 2 3 23 23 H 1.08999 * 109.46940 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46974 * 179.97438 * 3 2 1 25 25 H 1.09003 * 109.47075 * 299.99645 * 3 2 1 26 26 H 1.08990 * 109.47887 * 59.99908 * 3 2 1 27 27 H 1.09001 * 109.47169 * 300.00088 * 4 2 1 28 28 H 1.09003 * 109.47114 * 60.00047 * 4 2 1 29 29 H 1.08998 * 109.47527 * 179.97438 * 4 2 1 30 30 H 1.08997 * 109.46792 * 300.00070 * 5 2 1 31 31 H 1.08998 * 109.46641 * 179.97438 * 5 2 1 32 32 H 0.96994 * 120.00640 * 274.99509 * 6 5 2 33 33 H 1.08001 * 119.78652 * 359.97438 * 8 7 6 34 34 H 1.07998 * 119.84159 * 180.02562 * 9 8 7 35 35 H 1.08000 * 120.04805 * 179.97438 * 10 9 8 36 36 H 0.97001 * 119.99854 * 180.02562 * 15 14 12 37 37 H 1.07993 * 120.16172 * 359.72195 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8783 -1.5210 5 6 2.4840 -0.8781 1.5213 6 7 1.9957 -2.2593 1.5213 7 6 2.7966 -3.2833 1.0101 8 6 4.0600 -2.9899 0.5009 9 6 4.8620 -3.9973 -0.0087 10 6 4.4192 -5.3011 -0.0172 11 6 3.1457 -5.6128 0.4947 12 6 2.6846 -6.9495 0.4897 13 1 3.3927 -7.7649 0.4773 14 6 1.3109 -7.2158 0.5007 15 7 0.4603 -6.2791 0.1681 16 14 0.6916 -8.9088 0.9903 17 1 0.3508 -8.9123 2.4356 18 1 -0.5178 -9.2423 0.1957 19 1 1.7495 -9.9176 0.7287 20 6 2.3349 -4.5867 1.0111 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 3.5739 1.7565 0.0005 25 1 2.1206 2.2703 -0.8900 26 1 2.1206 2.2704 0.8898 27 1 2.1207 -1.9059 -1.5210 28 1 2.1207 -0.3645 -2.4110 29 1 3.5740 -0.8779 -1.5213 30 1 2.1207 -0.3642 2.4111 31 1 3.5740 -0.8785 1.5209 32 1 1.1163 -2.4628 1.8763 33 1 4.4158 -1.9702 0.5030 34 1 5.8398 -3.7593 -0.4006 35 1 5.0482 -6.0832 -0.4161 36 1 -0.4920 -6.4635 0.1761 37 1 1.3580 -4.8160 1.4104 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401797365.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:29 Heat of formation + Delta-G solvation = -20.539105 kcal Electronic energy + Delta-G solvation = -15951.991651 eV Core-core repulsion = 13543.597446 eV Total energy + Delta-G solvation = -2408.394204 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 249.124 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -37.73807 -34.67366 -33.09502 -29.39978 -28.69698 -28.18435 -27.39187 -27.11775 -25.17797 -24.21769 -20.93126 -19.72612 -17.10534 -15.97934 -14.86069 -14.75036 -14.02625 -13.64010 -13.14645 -13.06526 -12.83134 -12.71006 -12.50631 -12.29428 -12.20666 -12.10127 -11.88248 -11.64030 -11.49188 -11.26692 -11.02009 -10.61937 -10.38993 -10.21438 -9.76175 -9.58965 -9.52840 -9.35409 -9.08678 -8.33831 -7.24359 -6.67458 -5.96505 -4.25715 2.87873 2.94516 3.04192 3.07902 3.12806 3.16823 3.31366 3.43248 3.90052 4.01553 4.57821 4.78765 5.65441 5.67165 5.71632 5.78100 5.85333 5.89875 6.06718 6.17227 6.22150 6.36674 6.39838 6.58298 6.71064 6.94467 6.99153 7.17645 7.20226 7.44547 7.50137 7.88387 8.02646 8.18085 8.23725 8.55563 8.79310 8.90555 9.07391 9.18904 10.30658 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.029388 B = 0.005984 C = 0.005370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.539441 B = 4677.663883 C = 5213.158179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.442 4.442 2 Si 0.976 3.024 3 C -0.447 4.447 4 C -0.436 4.436 5 C -0.151 4.151 6 N -0.744 5.744 7 C 0.216 3.784 8 C -0.296 4.296 9 C -0.067 4.067 10 C -0.259 4.259 11 C 0.139 3.861 12 C -0.466 4.466 13 H 0.075 0.925 14 C 0.078 3.922 15 N -0.793 5.793 16 Si 0.903 3.097 17 H -0.270 1.270 18 H -0.279 1.279 19 H -0.263 1.263 20 C -0.234 4.234 21 H 0.061 0.939 22 H 0.061 0.939 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.390 0.610 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.276 0.724 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.723 10.862 0.760 10.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.550 4.550 2 Si 1.172 2.828 3 C -0.554 4.554 4 C -0.544 4.544 5 C -0.325 4.325 6 N -0.377 5.377 7 C 0.117 3.883 8 C -0.319 4.319 9 C -0.086 4.086 10 C -0.280 4.280 11 C 0.135 3.865 12 C -0.496 4.496 13 H 0.093 0.907 14 C -0.139 4.139 15 N -0.419 5.419 16 Si 0.728 3.272 17 H -0.195 1.195 18 H -0.205 1.205 19 H -0.187 1.187 20 C -0.258 4.258 21 H 0.080 0.920 22 H 0.081 0.919 23 H 0.092 0.908 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.098 0.902 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.223 0.777 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.840 11.060 0.709 11.114 hybrid contribution -0.717 -0.840 0.247 1.132 sum -1.557 10.220 0.956 10.382 Atomic orbital electron populations 1.26045 1.21053 1.04536 1.03341 0.79974 0.67733 0.65412 0.69704 1.26125 1.06093 1.19500 1.03694 1.26031 1.05996 1.08877 1.13521 1.26099 1.04462 0.89880 1.12027 1.43946 1.19040 1.03683 1.71042 1.17641 0.89893 0.87722 0.93011 1.19898 0.96378 0.97373 1.18222 1.20284 0.96781 0.93391 0.98154 1.20847 0.99741 0.94855 1.12562 1.17312 0.90087 0.92807 0.86244 1.19561 0.91538 0.93024 1.45463 0.90687 1.25853 0.97040 0.98573 0.92414 1.69871 1.03510 1.34419 1.34089 0.86392 0.78724 0.82761 0.79321 1.19533 1.20474 1.18687 1.20723 1.02891 0.90034 1.12137 0.91959 0.91927 0.90842 0.91418 0.91707 0.91704 0.90248 0.92744 0.91513 0.92522 0.90452 0.77665 0.89291 0.89801 0.89576 0.91297 0.86600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 -5.44 8.65 101.05 0.87 -4.57 16 2 Si 0.98 11.76 12.66 -169.99 -2.15 9.61 16 3 C -0.45 -4.64 8.65 101.05 0.87 -3.77 16 4 C -0.44 -6.63 8.23 101.05 0.83 -5.80 16 5 C -0.15 -2.20 5.15 59.84 0.31 -1.89 16 6 N -0.74 -13.67 4.85 -7.11 -0.03 -13.71 16 7 C 0.22 4.92 6.54 -83.85 -0.55 4.38 16 8 C -0.30 -6.56 8.73 -39.08 -0.34 -6.91 16 9 C -0.07 -1.55 10.02 -39.69 -0.40 -1.95 16 10 C -0.26 -6.61 9.79 -38.83 -0.38 -6.99 16 11 C 0.14 3.79 5.57 -106.85 -0.60 3.19 16 12 C -0.47 -12.69 9.05 -37.74 -0.34 -13.03 16 13 H 0.07 1.98 7.91 -52.49 -0.41 1.57 16 14 C 0.08 2.01 5.14 -17.34 -0.09 1.92 16 15 N -0.79 -20.73 10.95 55.55 0.61 -20.12 16 16 Si 0.90 19.08 29.59 -169.99 -5.03 14.05 16 17 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 18 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 19 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 20 C -0.23 -6.08 8.53 -38.67 -0.33 -6.41 16 21 H 0.06 0.68 7.96 -51.93 -0.41 0.27 16 22 H 0.06 0.71 7.96 -51.94 -0.41 0.30 16 23 H 0.07 1.02 7.96 -51.93 -0.41 0.61 16 24 H 0.07 0.69 7.96 -51.93 -0.41 0.27 16 25 H 0.06 0.64 7.96 -51.93 -0.41 0.22 16 26 H 0.06 0.61 7.96 -51.93 -0.41 0.20 16 27 H 0.08 1.47 7.96 -51.93 -0.41 1.06 16 28 H 0.05 0.73 7.96 -51.93 -0.41 0.32 16 29 H 0.07 1.02 7.96 -51.93 -0.41 0.61 16 30 H 0.06 0.70 7.96 -51.93 -0.41 0.29 16 31 H 0.08 1.17 5.74 -51.93 -0.30 0.88 16 32 H 0.39 6.82 8.84 -40.82 -0.36 6.46 16 33 H 0.09 1.75 5.97 -52.49 -0.31 1.43 16 34 H 0.08 1.70 8.06 -52.49 -0.42 1.28 16 35 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 36 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 37 H 0.12 3.11 6.16 -52.49 -0.32 2.78 16 LS Contribution 312.09 15.07 4.70 4.70 Total: -1.00 -28.68 312.09 -7.87 -36.54 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -5.83 Total: 10.75 kcal Atomic # 6 Polarization: -41.69 SS G_CDS: -0.13 Total: -41.83 kcal Atomic # 7 Polarization: -34.40 SS G_CDS: 0.57 Total: -33.83 kcal Atomic # 14 Polarization: 30.84 SS G_CDS: -7.18 Total: 23.65 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.68 -7.87 -36.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401797365.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.006 kcal (2) G-P(sol) polarization free energy of solvation -28.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds