Wall clock time and date at job start Mon Mar 30 2020 07:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86300 * 109.46759 * 2 1 4 4 C 1.86291 * 109.47224 * 239.99669 * 2 1 3 5 5 C 1.86306 * 109.47129 * 119.99543 * 2 1 3 6 6 N 1.46493 * 109.46830 * 60.00065 * 5 2 1 7 7 C 1.39689 * 119.99965 * 95.00259 * 6 5 2 8 8 C 1.39342 * 119.95090 * 0.02562 * 7 6 5 9 9 C 1.38473 * 120.42636 * 180.02562 * 8 7 6 10 10 C 1.37697 * 120.32336 * 359.97438 * 9 8 7 11 11 C 1.40746 * 119.89465 * 359.97438 * 10 9 8 12 12 C 1.41404 * 120.21074 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99371 * 24.37889 * 12 11 10 14 14 C 1.39933 * 120.00117 * 204.38210 * 12 11 10 15 15 N 1.30828 * 119.99831 * 17.83940 * 14 12 11 16 16 Si 1.86796 * 119.99788 * 197.83665 * 14 12 11 17 17 H 1.48501 * 109.47082 * 94.69103 * 16 14 12 18 18 H 1.48500 * 109.46974 * 214.69005 * 16 14 12 19 19 H 1.48501 * 109.47492 * 334.69201 * 16 14 12 20 20 C 1.38280 * 119.95305 * 179.97438 * 7 6 5 21 21 H 1.09002 * 109.47218 * 299.99993 * 1 2 3 22 22 H 1.08989 * 109.47253 * 60.00440 * 1 2 3 23 23 H 1.08999 * 109.46940 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46974 * 179.97438 * 3 2 1 25 25 H 1.09003 * 109.47075 * 299.99645 * 3 2 1 26 26 H 1.08990 * 109.47887 * 59.99908 * 3 2 1 27 27 H 1.09001 * 109.47169 * 300.00088 * 4 2 1 28 28 H 1.09003 * 109.47114 * 60.00047 * 4 2 1 29 29 H 1.08998 * 109.47527 * 179.97438 * 4 2 1 30 30 H 1.08997 * 109.46792 * 300.00070 * 5 2 1 31 31 H 1.08998 * 109.46641 * 179.97438 * 5 2 1 32 32 H 0.96994 * 120.00640 * 274.99509 * 6 5 2 33 33 H 1.08001 * 119.78652 * 359.97438 * 8 7 6 34 34 H 1.07998 * 119.84159 * 180.02562 * 9 8 7 35 35 H 1.08000 * 120.04805 * 179.97438 * 10 9 8 36 36 H 0.97001 * 119.99854 * 180.02562 * 15 14 12 37 37 H 1.07993 * 120.16172 * 359.72195 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8783 -1.5210 5 6 2.4840 -0.8781 1.5213 6 7 1.9957 -2.2593 1.5213 7 6 2.7966 -3.2833 1.0101 8 6 4.0600 -2.9899 0.5009 9 6 4.8620 -3.9973 -0.0087 10 6 4.4192 -5.3011 -0.0172 11 6 3.1457 -5.6128 0.4947 12 6 2.6846 -6.9495 0.4897 13 1 3.3927 -7.7649 0.4773 14 6 1.3109 -7.2158 0.5007 15 7 0.4603 -6.2791 0.1681 16 14 0.6916 -8.9088 0.9903 17 1 0.3508 -8.9123 2.4356 18 1 -0.5178 -9.2423 0.1957 19 1 1.7495 -9.9176 0.7287 20 6 2.3349 -4.5867 1.0111 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 3.5739 1.7565 0.0005 25 1 2.1206 2.2703 -0.8900 26 1 2.1206 2.2704 0.8898 27 1 2.1207 -1.9059 -1.5210 28 1 2.1207 -0.3645 -2.4110 29 1 3.5740 -0.8779 -1.5213 30 1 2.1207 -0.3642 2.4111 31 1 3.5740 -0.8785 1.5209 32 1 1.1163 -2.4628 1.8763 33 1 4.4158 -1.9702 0.5030 34 1 5.8398 -3.7593 -0.4006 35 1 5.0482 -6.0832 -0.4161 36 1 -0.4920 -6.4635 0.1761 37 1 1.3580 -4.8160 1.4104 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401797365.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:29 Heat of formation + Delta-G solvation = -33.457160 kcal Electronic energy + Delta-G solvation = -15952.551819 eV Core-core repulsion = 13543.597446 eV Total energy + Delta-G solvation = -2408.954373 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 249.124 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.54985 -36.39612 -34.94022 -31.31983 -30.20216 -29.34729 -28.30862 -28.22706 -27.06474 -25.70965 -22.81491 -21.55021 -19.00277 -17.74137 -16.57714 -16.50232 -15.77829 -14.86196 -14.71651 -14.41133 -14.07306 -14.00368 -13.83516 -13.71830 -13.48874 -13.15256 -13.09454 -13.06956 -12.92300 -12.74442 -12.70996 -12.40724 -12.05389 -11.77059 -11.49930 -11.24931 -10.95699 -10.67660 -10.63882 -9.91456 -9.19977 -8.58938 -7.63614 -6.29176 1.11573 1.36557 1.38116 1.51239 1.59385 1.93631 2.04443 2.17786 2.23782 2.82489 2.88180 3.10109 3.92628 4.48626 4.60038 4.79760 4.84520 4.85886 4.89068 4.92639 4.94906 4.96255 5.02531 5.18628 5.23937 5.37639 5.50376 5.58763 5.64469 5.68871 5.74187 6.01832 6.16918 6.26131 6.32206 6.62632 6.99094 7.09967 7.16151 7.33191 8.40733 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.029388 B = 0.005984 C = 0.005370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.539441 B = 4677.663883 C = 5213.158179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.454 4.454 2 Si 1.050 2.950 3 C -0.438 4.438 4 C -0.463 4.463 5 C -0.181 4.181 6 N -0.740 5.740 7 C 0.226 3.774 8 C -0.295 4.295 9 C -0.066 4.066 10 C -0.291 4.291 11 C 0.108 3.892 12 C -0.507 4.507 13 H 0.068 0.932 14 C 0.038 3.962 15 N -0.822 5.822 16 Si 0.978 3.022 17 H -0.263 1.263 18 H -0.268 1.268 19 H -0.261 1.261 20 C -0.265 4.265 21 H 0.079 0.921 22 H 0.072 0.928 23 H 0.048 0.952 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.035 0.965 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.393 0.607 33 H 0.120 0.880 34 H 0.115 0.885 35 H 0.085 0.915 36 H 0.284 0.716 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.983 13.316 1.332 13.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.561 4.561 2 Si 1.242 2.758 3 C -0.547 4.547 4 C -0.567 4.567 5 C -0.351 4.351 6 N -0.371 5.371 7 C 0.124 3.876 8 C -0.318 4.318 9 C -0.085 4.085 10 C -0.312 4.312 11 C 0.105 3.895 12 C -0.537 4.537 13 H 0.086 0.914 14 C -0.177 4.177 15 N -0.449 5.449 16 Si 0.800 3.200 17 H -0.188 1.188 18 H -0.192 1.192 19 H -0.185 1.185 20 C -0.290 4.290 21 H 0.098 0.902 22 H 0.091 0.909 23 H 0.068 0.932 24 H 0.092 0.908 25 H 0.094 0.906 26 H 0.101 0.899 27 H 0.054 0.946 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.227 0.773 33 H 0.138 0.862 34 H 0.133 0.867 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.098 13.510 1.277 13.615 hybrid contribution -0.603 -1.446 0.052 1.567 sum -1.701 12.064 1.328 12.256 Atomic orbital electron populations 1.26172 1.21699 1.03439 1.04770 0.78891 0.66415 0.65733 0.64777 1.25948 1.06519 1.17055 1.05216 1.26447 1.05899 1.07009 1.17309 1.26736 1.04641 0.87766 1.15914 1.44059 1.18650 1.04581 1.69788 1.17719 0.90437 0.87718 0.91770 1.20253 0.95876 0.98683 1.17006 1.20658 0.98129 0.92566 0.97124 1.20987 0.99726 0.96213 1.14300 1.17700 0.91274 0.93538 0.87015 1.19792 0.92719 0.93163 1.48021 0.91383 1.26676 0.96551 1.02797 0.91648 1.69930 1.04055 1.36511 1.34354 0.85261 0.78224 0.77421 0.79142 1.18791 1.19213 1.18498 1.20668 1.02539 0.91579 1.14178 0.90166 0.90930 0.93223 0.90780 0.90563 0.89898 0.94584 0.91516 0.91951 0.89629 0.90706 0.77335 0.86206 0.86691 0.89714 0.90547 0.88317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 -10.10 8.65 113.37 0.98 -9.12 16 2 Si 1.05 22.35 12.66 68.60 0.87 23.21 16 3 C -0.44 -6.91 8.65 113.37 0.98 -5.93 16 4 C -0.46 -13.73 8.23 113.37 0.93 -12.80 16 5 C -0.18 -4.79 5.15 127.77 0.66 -4.14 16 6 N -0.74 -26.77 4.85 -176.42 -0.85 -27.62 16 7 C 0.23 10.41 6.54 38.16 0.25 10.66 16 8 C -0.30 -12.94 8.73 22.59 0.20 -12.75 16 9 C -0.07 -3.06 10.02 22.20 0.22 -2.83 16 10 C -0.29 -15.44 9.79 22.75 0.22 -15.22 16 11 C 0.11 6.19 5.57 -21.31 -0.12 6.07 16 12 C -0.51 -29.10 9.05 23.46 0.21 -28.89 16 13 H 0.07 3.82 7.91 -2.91 -0.02 3.80 16 14 C 0.04 2.00 5.14 85.25 0.44 2.44 16 15 N -0.82 -44.64 10.95 21.82 0.24 -44.40 16 16 Si 0.98 40.10 29.59 68.60 2.03 42.13 16 17 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 18 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 19 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 20 C -0.27 -14.43 8.53 22.86 0.19 -14.23 16 21 H 0.08 1.49 7.96 -2.39 -0.02 1.47 16 22 H 0.07 1.47 7.96 -2.39 -0.02 1.45 16 23 H 0.05 1.34 7.96 -2.39 -0.02 1.32 16 24 H 0.07 1.14 7.96 -2.39 -0.02 1.12 16 25 H 0.08 1.11 7.96 -2.39 -0.02 1.09 16 26 H 0.08 1.08 7.96 -2.39 -0.02 1.06 16 27 H 0.03 1.36 7.96 -2.39 -0.02 1.34 16 28 H 0.07 1.73 7.96 -2.39 -0.02 1.71 16 29 H 0.06 1.84 7.96 -2.39 -0.02 1.82 16 30 H 0.09 1.81 7.96 -2.39 -0.02 1.79 16 31 H 0.07 2.04 5.74 -2.39 -0.01 2.03 16 32 H 0.39 13.72 8.84 -92.71 -0.82 12.90 16 33 H 0.12 4.44 5.97 -2.91 -0.02 4.42 16 34 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 35 H 0.08 4.33 8.06 -2.91 -0.02 4.31 16 36 H 0.28 13.92 8.30 -92.71 -0.77 13.15 16 37 H 0.10 5.60 6.16 -2.91 -0.02 5.58 16 Total: -1.00 -65.43 312.09 7.68 -57.75 By element: Atomic # 1 Polarization: 35.43 SS G_CDS: 0.22 Total: 35.66 kcal Atomic # 6 Polarization: -91.91 SS G_CDS: 5.17 Total: -86.74 kcal Atomic # 7 Polarization: -71.41 SS G_CDS: -0.62 Total: -72.02 kcal Atomic # 14 Polarization: 62.45 SS G_CDS: 2.90 Total: 65.35 kcal Total: -65.43 7.68 -57.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401797365.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.297 kcal (2) G-P(sol) polarization free energy of solvation -65.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds