Wall clock time and date at job start Mon Mar 30 2020 07:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86296 * 109.47287 * 2 1 4 4 C 1.86306 * 109.47306 * 239.99947 * 2 1 3 5 5 C 1.86305 * 109.47240 * 120.00237 * 2 1 3 6 6 N 1.46494 * 109.47018 * 59.99696 * 5 2 1 7 7 C 1.38857 * 120.00037 * 95.00568 * 6 5 2 8 8 C 1.39576 * 119.83829 * 359.72322 * 7 6 5 9 9 C 1.36341 * 120.15686 * 179.72098 * 8 7 6 10 10 C 1.40888 * 119.83734 * 0.55338 * 9 8 7 11 11 C 1.41132 * 120.15422 * 179.70190 * 10 9 8 12 12 H 1.08004 * 119.99937 * 204.63164 * 11 10 9 13 13 C 1.39862 * 120.00295 * 24.62650 * 11 10 9 14 14 N 1.30903 * 119.99900 * 17.95987 * 13 11 10 15 15 Si 1.86808 * 120.00282 * 197.95723 * 13 11 10 16 16 H 1.48497 * 109.46836 * 89.99757 * 15 13 11 17 17 H 1.48495 * 109.46921 * 210.00070 * 15 13 11 18 18 H 1.48503 * 109.46806 * 330.00242 * 15 13 11 19 19 C 1.40886 * 119.68871 * 359.71793 * 10 9 8 20 20 C 1.36339 * 119.83877 * 0.02562 * 19 10 9 21 21 H 1.08995 * 109.47166 * 299.99990 * 1 2 3 22 22 H 1.08997 * 109.47146 * 60.00157 * 1 2 3 23 23 H 1.09006 * 109.46865 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47526 * 179.97438 * 3 2 1 25 25 H 1.08999 * 109.47416 * 300.00048 * 3 2 1 26 26 H 1.09004 * 109.46745 * 59.99958 * 3 2 1 27 27 H 1.08997 * 109.46747 * 300.00416 * 4 2 1 28 28 H 1.09005 * 109.46884 * 59.99622 * 4 2 1 29 29 H 1.08993 * 109.46919 * 179.97438 * 4 2 1 30 30 H 1.09004 * 109.47025 * 300.00184 * 5 2 1 31 31 H 1.08997 * 109.46974 * 180.02562 * 5 2 1 32 32 H 0.96999 * 120.00230 * 275.00133 * 6 5 2 33 33 H 1.07993 * 119.91885 * 359.97438 * 8 7 6 34 34 H 1.08001 * 120.07984 * 180.27740 * 9 8 7 35 35 H 0.97005 * 120.00182 * 180.02562 * 14 13 11 36 36 H 1.08003 * 120.08033 * 179.97438 * 19 10 9 37 37 H 1.07996 * 119.92094 * 179.97438 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4841 -0.8783 -1.5212 5 6 2.4840 -0.8783 1.5211 6 7 1.9957 -2.2594 1.5211 7 6 2.7918 -3.2774 1.0129 8 6 4.0544 -2.9800 0.4977 9 6 4.8438 -3.9752 0.0023 10 6 4.3774 -5.3046 0.0006 11 6 5.1864 -6.3391 -0.5163 12 1 4.7319 -7.2457 -0.8876 13 6 6.5767 -6.1901 -0.5479 14 7 7.1549 -5.2831 0.1981 15 14 7.6086 -7.2856 -1.6546 16 1 7.7585 -6.6439 -2.9854 17 1 8.9487 -7.4822 -1.0460 18 1 6.9386 -8.6015 -1.8123 19 6 3.0995 -5.5965 0.5171 20 6 2.3231 -4.5920 1.0141 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.5740 1.7564 0.0005 25 1 2.1207 2.2703 -0.8900 26 1 2.1207 2.2702 0.8900 27 1 2.1207 -1.9059 -1.5211 28 1 2.1207 -0.3644 -2.4112 29 1 3.5740 -0.8778 -1.5213 30 1 2.1207 -0.3645 2.4112 31 1 3.5740 -0.8779 1.5213 32 1 1.1162 -2.4629 1.8761 33 1 4.4085 -1.9598 0.4952 34 1 5.8224 -3.7443 -0.3920 35 1 8.1192 -5.1795 0.1759 36 1 2.7355 -6.6133 0.5186 37 1 1.3432 -4.8141 1.4100 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401956401.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:33 Heat of formation + Delta-G solvation = -16.673119 kcal Electronic energy + Delta-G solvation = -15832.659779 eV Core-core repulsion = 13424.433216 eV Total energy + Delta-G solvation = -2408.226562 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 249.124 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -37.89662 -34.84938 -32.77676 -29.47255 -28.91217 -28.44843 -27.45426 -27.14897 -25.62079 -23.56360 -20.99406 -19.80561 -17.16848 -16.24587 -14.92496 -14.77312 -13.81831 -13.69217 -13.16335 -13.11807 -12.84120 -12.71013 -12.52394 -12.35089 -12.24560 -12.09309 -11.92160 -11.71242 -11.48231 -11.21290 -11.01329 -10.90614 -10.59448 -10.16729 -9.81542 -9.64116 -9.61371 -9.20895 -9.03762 -8.18974 -7.43307 -6.59085 -6.22834 -3.97726 2.84512 2.97944 3.01035 3.03066 3.15553 3.17951 3.20861 3.42610 3.84468 4.08558 4.57522 4.82415 5.63320 5.65781 5.68704 5.70184 5.74185 5.87613 6.01655 6.11724 6.17769 6.33654 6.36941 6.45458 6.51108 6.91238 6.98973 6.99174 7.24958 7.40271 7.61037 7.74313 7.90080 8.20126 8.34623 8.55379 8.76622 8.86083 9.10691 9.20499 10.41509 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.033821 B = 0.005320 C = 0.004988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.692050 B = 5261.518439 C = 5612.169418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.440 4.440 2 Si 0.973 3.027 3 C -0.448 4.448 4 C -0.437 4.437 5 C -0.148 4.148 6 N -0.745 5.745 7 C 0.095 3.905 8 C -0.163 4.163 9 C -0.124 4.124 10 C 0.072 3.928 11 C -0.468 4.468 12 H 0.071 0.929 13 C 0.075 3.925 14 N -0.809 5.809 15 Si 0.902 3.098 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.265 1.265 19 C -0.187 4.187 20 C -0.163 4.163 21 H 0.062 0.938 22 H 0.062 0.938 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.385 0.615 33 H 0.091 0.909 34 H 0.117 0.883 35 H 0.275 0.725 36 H 0.090 0.910 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.497 10.323 -0.233 12.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.547 4.547 2 Si 1.169 2.831 3 C -0.555 4.555 4 C -0.545 4.545 5 C -0.321 4.321 6 N -0.380 5.380 7 C -0.002 4.002 8 C -0.184 4.184 9 C -0.144 4.144 10 C 0.069 3.931 11 C -0.499 4.499 12 H 0.090 0.910 13 C -0.140 4.140 14 N -0.437 5.437 15 Si 0.727 3.273 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.189 1.189 19 C -0.207 4.207 20 C -0.186 4.186 21 H 0.081 0.919 22 H 0.081 0.919 23 H 0.088 0.912 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.217 0.783 33 H 0.109 0.891 34 H 0.135 0.865 35 H 0.086 0.914 36 H 0.108 0.892 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.111 10.539 -0.177 12.715 hybrid contribution 0.279 -0.592 -0.283 0.713 sum -6.832 9.947 -0.460 12.076 Atomic orbital electron populations 1.26028 1.21090 1.04199 1.03414 0.80022 0.67603 0.65625 0.69877 1.26127 1.06265 1.19454 1.03662 1.26043 1.06313 1.08545 1.13603 1.26055 1.04483 0.89838 1.11763 1.43394 1.18748 1.03591 1.72241 1.17354 0.92172 0.87399 1.03317 1.20113 0.94016 0.97976 1.06342 1.20940 0.99519 0.91981 1.01935 1.17488 0.91394 0.92635 0.91556 1.19367 0.90777 1.02589 1.37151 0.91036 1.25774 0.98625 0.95428 0.94165 1.69860 1.11428 1.30998 1.31382 0.86427 0.78906 0.81039 0.80924 1.19585 1.20630 1.18902 1.20531 0.97392 0.96491 1.06266 1.19806 0.99140 0.91870 1.07743 0.91908 0.91921 0.91163 0.91306 0.91740 0.91710 0.90531 0.92680 0.91302 0.92664 0.90545 0.78317 0.89078 0.86482 0.91401 0.89217 0.89681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 -4.72 8.65 101.05 0.87 -3.85 16 2 Si 0.97 10.90 12.60 -169.99 -2.14 8.76 16 3 C -0.45 -4.56 8.65 101.05 0.87 -3.68 16 4 C -0.44 -6.28 8.17 101.05 0.83 -5.45 16 5 C -0.15 -2.06 5.15 59.84 0.31 -1.75 16 6 N -0.74 -12.42 4.82 -6.95 -0.03 -12.46 16 7 C 0.09 2.02 6.56 -83.68 -0.55 1.47 16 8 C -0.16 -3.72 8.56 -39.77 -0.34 -4.06 16 9 C -0.12 -3.24 8.64 -39.26 -0.34 -3.58 16 10 C 0.07 1.96 5.57 -106.79 -0.60 1.37 16 11 C -0.47 -12.83 9.03 -37.88 -0.34 -13.17 16 12 H 0.07 1.90 7.91 -52.48 -0.41 1.49 16 13 C 0.07 1.95 5.13 -17.34 -0.09 1.86 16 14 N -0.81 -21.69 10.96 55.54 0.61 -21.08 16 15 Si 0.90 19.46 29.60 -169.99 -5.03 14.43 16 16 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 17 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 18 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 19 C -0.19 -4.65 9.74 -39.26 -0.38 -5.03 16 20 C -0.16 -3.65 9.82 -39.77 -0.39 -4.04 16 21 H 0.06 0.60 7.96 -51.93 -0.41 0.19 16 22 H 0.06 0.63 7.96 -51.93 -0.41 0.22 16 23 H 0.07 0.81 7.96 -51.93 -0.41 0.40 16 24 H 0.07 0.71 7.96 -51.93 -0.41 0.30 16 25 H 0.06 0.62 7.96 -51.93 -0.41 0.20 16 26 H 0.06 0.60 7.96 -51.93 -0.41 0.18 16 27 H 0.08 1.28 7.96 -51.93 -0.41 0.87 16 28 H 0.05 0.70 7.96 -51.93 -0.41 0.28 16 29 H 0.07 1.05 7.96 -51.93 -0.41 0.64 16 30 H 0.05 0.66 7.96 -51.93 -0.41 0.24 16 31 H 0.08 1.17 5.73 -51.93 -0.30 0.88 16 32 H 0.38 5.68 8.83 -40.82 -0.36 5.32 16 33 H 0.09 1.88 5.94 -52.49 -0.31 1.57 16 34 H 0.12 3.19 6.16 -52.49 -0.32 2.86 16 35 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 36 H 0.09 2.12 8.06 -52.48 -0.42 1.70 16 37 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 311.59 15.07 4.70 4.70 Total: -1.00 -28.85 311.59 -7.87 -36.72 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -5.82 Total: 8.86 kcal Atomic # 6 Polarization: -39.78 SS G_CDS: -0.15 Total: -39.92 kcal Atomic # 7 Polarization: -34.12 SS G_CDS: 0.58 Total: -33.54 kcal Atomic # 14 Polarization: 30.36 SS G_CDS: -7.17 Total: 23.19 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.85 -7.87 -36.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401956401.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.045 kcal (2) G-P(sol) polarization free energy of solvation -28.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds