Wall clock time and date at job start Mon Mar 30 2020 07:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86296 * 109.47287 * 2 1 4 4 C 1.86306 * 109.47306 * 239.99947 * 2 1 3 5 5 C 1.86305 * 109.47240 * 120.00237 * 2 1 3 6 6 N 1.46494 * 109.47018 * 59.99696 * 5 2 1 7 7 C 1.38857 * 120.00037 * 95.00568 * 6 5 2 8 8 C 1.39576 * 119.83829 * 359.72322 * 7 6 5 9 9 C 1.36341 * 120.15686 * 179.72098 * 8 7 6 10 10 C 1.40888 * 119.83734 * 0.55338 * 9 8 7 11 11 C 1.41132 * 120.15422 * 179.70190 * 10 9 8 12 12 H 1.08004 * 119.99937 * 204.63164 * 11 10 9 13 13 C 1.39862 * 120.00295 * 24.62650 * 11 10 9 14 14 N 1.30903 * 119.99900 * 17.95987 * 13 11 10 15 15 Si 1.86808 * 120.00282 * 197.95723 * 13 11 10 16 16 H 1.48497 * 109.46836 * 89.99757 * 15 13 11 17 17 H 1.48495 * 109.46921 * 210.00070 * 15 13 11 18 18 H 1.48503 * 109.46806 * 330.00242 * 15 13 11 19 19 C 1.40886 * 119.68871 * 359.71793 * 10 9 8 20 20 C 1.36339 * 119.83877 * 0.02562 * 19 10 9 21 21 H 1.08995 * 109.47166 * 299.99990 * 1 2 3 22 22 H 1.08997 * 109.47146 * 60.00157 * 1 2 3 23 23 H 1.09006 * 109.46865 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47526 * 179.97438 * 3 2 1 25 25 H 1.08999 * 109.47416 * 300.00048 * 3 2 1 26 26 H 1.09004 * 109.46745 * 59.99958 * 3 2 1 27 27 H 1.08997 * 109.46747 * 300.00416 * 4 2 1 28 28 H 1.09005 * 109.46884 * 59.99622 * 4 2 1 29 29 H 1.08993 * 109.46919 * 179.97438 * 4 2 1 30 30 H 1.09004 * 109.47025 * 300.00184 * 5 2 1 31 31 H 1.08997 * 109.46974 * 180.02562 * 5 2 1 32 32 H 0.96999 * 120.00230 * 275.00133 * 6 5 2 33 33 H 1.07993 * 119.91885 * 359.97438 * 8 7 6 34 34 H 1.08001 * 120.07984 * 180.27740 * 9 8 7 35 35 H 0.97005 * 120.00182 * 180.02562 * 14 13 11 36 36 H 1.08003 * 120.08033 * 179.97438 * 19 10 9 37 37 H 1.07996 * 119.92094 * 179.97438 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4841 -0.8783 -1.5212 5 6 2.4840 -0.8783 1.5211 6 7 1.9957 -2.2594 1.5211 7 6 2.7918 -3.2774 1.0129 8 6 4.0544 -2.9800 0.4977 9 6 4.8438 -3.9752 0.0023 10 6 4.3774 -5.3046 0.0006 11 6 5.1864 -6.3391 -0.5163 12 1 4.7319 -7.2457 -0.8876 13 6 6.5767 -6.1901 -0.5479 14 7 7.1549 -5.2831 0.1981 15 14 7.6086 -7.2856 -1.6546 16 1 7.7585 -6.6439 -2.9854 17 1 8.9487 -7.4822 -1.0460 18 1 6.9386 -8.6015 -1.8123 19 6 3.0995 -5.5965 0.5171 20 6 2.3231 -4.5920 1.0141 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.5740 1.7564 0.0005 25 1 2.1207 2.2703 -0.8900 26 1 2.1207 2.2702 0.8900 27 1 2.1207 -1.9059 -1.5211 28 1 2.1207 -0.3644 -2.4112 29 1 3.5740 -0.8778 -1.5213 30 1 2.1207 -0.3645 2.4112 31 1 3.5740 -0.8779 1.5213 32 1 1.1162 -2.4629 1.8761 33 1 4.4085 -1.9598 0.4952 34 1 5.8224 -3.7443 -0.3920 35 1 8.1192 -5.1795 0.1759 36 1 2.7355 -6.6133 0.5186 37 1 1.3432 -4.8141 1.4100 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401956401.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:32 Heat of formation + Delta-G solvation = -29.759962 kcal Electronic energy + Delta-G solvation = -15833.227267 eV Core-core repulsion = 13424.433216 eV Total energy + Delta-G solvation = -2408.794051 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 249.124 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.69734 -36.55546 -34.59278 -31.34223 -30.67261 -29.40409 -28.24740 -28.23125 -27.24215 -25.23188 -22.86423 -21.60159 -19.12680 -17.91967 -16.76416 -16.31980 -15.59526 -14.85396 -14.68772 -14.40364 -14.07403 -13.99196 -13.72946 -13.70043 -13.55907 -13.21910 -13.10886 -13.04369 -12.91687 -12.75113 -12.69261 -12.54163 -12.29665 -11.72981 -11.51457 -11.12267 -10.90628 -10.66614 -10.61839 -9.80882 -9.34464 -8.51845 -7.92448 -5.95191 1.13689 1.22775 1.39178 1.51720 1.59008 1.94352 2.09932 2.16153 2.27832 2.83335 2.89773 3.19312 3.90511 4.41804 4.55301 4.66185 4.85957 4.88384 4.91691 4.92008 4.94088 4.94740 5.04373 5.19205 5.23814 5.31534 5.49833 5.60752 5.69902 5.72256 5.75210 5.85714 6.02289 6.22773 6.44050 6.71829 6.93787 7.11605 7.22694 7.41995 8.50607 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.033821 B = 0.005320 C = 0.004988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.692050 B = 5261.518439 C = 5612.169418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.442 4.442 2 Si 1.051 2.949 3 C -0.448 4.448 4 C -0.466 4.466 5 C -0.180 4.180 6 N -0.736 5.736 7 C 0.121 3.879 8 C -0.172 4.172 9 C -0.143 4.143 10 C 0.029 3.971 11 C -0.508 4.508 12 H 0.065 0.935 13 C 0.032 3.968 14 N -0.844 5.844 15 Si 0.975 3.025 16 H -0.265 1.265 17 H -0.270 1.270 18 H -0.261 1.261 19 C -0.196 4.196 20 C -0.175 4.175 21 H 0.080 0.920 22 H 0.072 0.928 23 H 0.060 0.940 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.044 0.956 28 H 0.067 0.933 29 H 0.049 0.951 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.399 0.601 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.281 0.719 36 H 0.093 0.907 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.117 12.369 0.273 15.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.551 4.551 2 Si 1.243 2.757 3 C -0.556 4.556 4 C -0.570 4.570 5 C -0.350 4.350 6 N -0.370 5.370 7 C 0.021 3.979 8 C -0.194 4.194 9 C -0.163 4.163 10 C 0.026 3.974 11 C -0.539 4.539 12 H 0.083 0.917 13 C -0.180 4.180 14 N -0.473 5.473 15 Si 0.797 3.203 16 H -0.190 1.190 17 H -0.195 1.195 18 H -0.185 1.185 19 C -0.216 4.216 20 C -0.197 4.197 21 H 0.100 0.900 22 H 0.091 0.909 23 H 0.080 0.920 24 H 0.084 0.916 25 H 0.094 0.906 26 H 0.101 0.899 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.104 0.896 31 H 0.078 0.922 32 H 0.233 0.767 33 H 0.127 0.873 34 H 0.114 0.886 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.748 12.578 0.339 15.324 hybrid contribution 0.636 -1.073 -0.355 1.296 sum -8.112 11.505 -0.016 14.077 Atomic orbital electron populations 1.26015 1.20024 1.04136 1.04893 0.78863 0.67352 0.64977 0.64530 1.26069 1.06135 1.18284 1.05136 1.26502 1.05272 1.07588 1.17617 1.26685 1.03880 0.88491 1.15918 1.43446 1.18710 1.03892 1.70947 1.17437 0.91596 0.88311 1.00552 1.20265 0.94620 0.98211 1.06341 1.20873 0.99381 0.92694 1.03369 1.17808 0.92810 0.93191 0.93567 1.19577 0.92081 1.02945 1.39310 0.91708 1.26576 0.99308 0.96985 0.95096 1.69926 1.11951 1.32737 1.32682 0.85322 0.77272 0.78984 0.78765 1.19035 1.19493 1.18531 1.20735 0.97099 0.97550 1.06232 1.20120 1.00286 0.91759 1.07555 0.90043 0.90911 0.92048 0.91640 0.90644 0.89922 0.93650 0.91415 0.93192 0.89627 0.92176 0.76652 0.87256 0.88590 0.90880 0.88896 0.86450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 -7.67 8.65 113.37 0.98 -6.69 16 2 Si 1.05 20.44 12.60 68.60 0.86 21.31 16 3 C -0.45 -7.32 8.65 113.37 0.98 -6.34 16 4 C -0.47 -13.25 8.17 113.37 0.93 -12.33 16 5 C -0.18 -4.51 5.15 127.77 0.66 -3.85 16 6 N -0.74 -22.81 4.82 -175.90 -0.85 -23.65 16 7 C 0.12 5.07 6.56 38.67 0.25 5.33 16 8 C -0.17 -8.04 8.56 22.15 0.19 -7.85 16 9 C -0.14 -7.86 8.64 22.48 0.19 -7.67 16 10 C 0.03 1.66 5.57 -21.27 -0.12 1.54 16 11 C -0.51 -29.34 9.03 23.37 0.21 -29.13 16 12 H 0.06 3.65 7.91 -2.91 -0.02 3.63 16 13 C 0.03 1.71 5.13 85.22 0.44 2.15 16 14 N -0.84 -47.25 10.96 21.81 0.24 -47.01 16 15 Si 0.97 41.22 29.60 68.60 2.03 43.25 16 16 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 17 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 18 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 19 C -0.20 -10.04 9.74 22.48 0.22 -9.82 16 20 C -0.17 -7.72 9.82 22.15 0.22 -7.50 16 21 H 0.08 1.15 7.96 -2.39 -0.02 1.13 16 22 H 0.07 1.16 7.96 -2.39 -0.02 1.14 16 23 H 0.06 1.20 7.96 -2.38 -0.02 1.18 16 24 H 0.06 1.15 7.96 -2.39 -0.02 1.13 16 25 H 0.07 1.12 7.96 -2.39 -0.02 1.10 16 26 H 0.08 1.11 7.96 -2.39 -0.02 1.09 16 27 H 0.04 1.54 7.96 -2.39 -0.02 1.52 16 28 H 0.07 1.67 7.96 -2.38 -0.02 1.65 16 29 H 0.05 1.56 7.96 -2.39 -0.02 1.54 16 30 H 0.09 1.67 7.96 -2.39 -0.02 1.65 16 31 H 0.06 1.74 5.73 -2.39 -0.01 1.72 16 32 H 0.40 10.42 8.83 -92.71 -0.82 9.60 16 33 H 0.11 4.58 5.94 -2.91 -0.02 4.56 16 34 H 0.10 5.58 6.16 -2.91 -0.02 5.56 16 35 H 0.28 14.31 8.30 -92.70 -0.77 13.54 16 36 H 0.09 4.54 8.06 -2.91 -0.02 4.52 16 37 H 0.12 4.36 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -65.70 311.59 7.66 -58.04 By element: Atomic # 1 Polarization: 30.00 SS G_CDS: 0.22 Total: 30.22 kcal Atomic # 6 Polarization: -87.30 SS G_CDS: 5.15 Total: -82.15 kcal Atomic # 7 Polarization: -70.06 SS G_CDS: -0.61 Total: -70.67 kcal Atomic # 14 Polarization: 61.66 SS G_CDS: 2.89 Total: 64.56 kcal Total: -65.70 7.66 -58.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401956401.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.277 kcal (2) G-P(sol) polarization free energy of solvation -65.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds