Wall clock time and date at job start Mon Mar 30 2020 07:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86802 * 120.00090 * 2 1 4 4 H 1.48506 * 109.46930 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47371 * 119.99358 * 3 2 1 6 6 H 1.48504 * 109.47131 * 240.00122 * 3 2 1 7 7 C 1.38945 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99840 * 207.07290 * 7 2 1 9 9 N 1.37098 * 120.00092 * 27.07785 * 7 2 1 10 10 C 1.34777 * 120.00079 * 213.71691 * 9 7 2 11 11 O 1.21297 * 119.99750 * 3.70351 * 10 9 7 12 12 C 1.50694 * 120.00013 * 183.69892 * 10 9 7 13 13 H 1.09002 * 110.05709 * 353.69085 * 12 10 9 14 14 C 1.54393 * 110.06827 * 115.17156 * 12 10 9 15 15 C 1.54929 * 104.22108 * 142.78314 * 14 12 10 16 16 C 1.54991 * 102.82125 * 322.27975 * 15 14 12 17 17 C 1.53483 * 110.07321 * 232.14070 * 12 10 9 18 18 C 1.52571 * 121.05112 * 96.57065 * 17 12 10 19 19 C 1.52550 * 121.08572 * 24.85778 * 17 12 10 20 20 C 1.46498 * 119.99990 * 33.71787 * 9 7 2 21 21 C 1.53000 * 117.49985 * 128.58481 * 20 9 7 22 22 C 1.52997 * 117.50026 * 59.96018 * 20 9 7 23 23 H 0.97001 * 120.00425 * 187.05821 * 1 2 3 24 24 H 1.08995 * 110.48164 * 261.46462 * 14 12 10 25 25 H 1.09005 * 110.48008 * 24.09889 * 14 12 10 26 26 H 1.08994 * 110.74466 * 80.61625 * 15 14 12 27 27 H 1.09001 * 110.73629 * 203.76673 * 15 14 12 28 28 H 1.08997 * 110.51093 * 156.22196 * 16 15 14 29 29 H 1.09002 * 110.51167 * 278.79639 * 16 15 14 30 30 H 1.08999 * 117.50540 * 356.96940 * 18 17 12 31 31 H 1.08993 * 117.51372 * 142.06390 * 18 17 12 32 32 H 1.09004 * 117.50899 * 217.88623 * 19 17 12 33 33 H 1.09003 * 117.51101 * 2.96572 * 19 17 12 34 34 H 1.09003 * 115.54669 * 274.29016 * 20 9 7 35 35 H 1.09001 * 117.49983 * 359.97438 * 21 20 9 36 36 H 1.08995 * 117.49772 * 145.01813 * 21 20 9 37 37 H 1.08996 * 117.49924 * 214.98090 * 22 20 9 38 38 H 1.09001 * 117.50060 * 0.02562 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 1.2830 2.7465 -0.0006 5 1 3.1017 1.6965 1.2125 6 1 3.1018 1.6964 -1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0001 -1.2543 0.4263 9 7 1.4360 -2.3258 -0.5394 10 6 1.6938 -3.5367 -0.0067 11 8 2.3782 -3.6272 0.9907 12 6 1.1317 -4.7780 -0.6501 13 1 0.4562 -4.5057 -1.4610 14 6 2.2779 -5.6607 -1.1893 15 6 1.8034 -7.1099 -0.9156 16 6 1.0977 -6.9869 0.4588 17 6 0.3891 -5.6226 0.3944 18 6 -1.1244 -5.5202 0.5575 19 6 -0.1960 -4.9855 1.6510 20 6 0.5438 -2.2091 -1.6955 21 6 0.8327 -3.1019 -2.9039 22 6 1.1214 -1.6011 -2.9751 23 1 -0.4851 -0.8337 0.1032 24 1 2.4129 -5.4992 -2.2588 25 1 3.2034 -5.4544 -0.6516 26 1 1.1012 -7.4375 -1.6822 27 1 2.6534 -7.7897 -0.8568 28 1 0.3711 -7.7890 0.5882 29 1 1.8294 -7.0018 1.2666 30 1 -1.6489 -4.7902 -0.0589 31 1 -1.6716 -6.4393 0.7667 32 1 -0.1325 -5.5530 2.5795 33 1 -0.1099 -3.9038 1.7539 34 1 -0.5001 -1.9970 -1.4641 35 1 1.6869 -3.7759 -2.8389 36 1 -0.0211 -3.4775 -3.4677 37 1 0.4575 -0.9893 -3.5859 38 1 2.1655 -1.2883 -2.9571 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528179756.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:52 Heat of formation + Delta-G solvation = -1.400676 kcal Electronic energy + Delta-G solvation = -19446.699431 eV Core-core repulsion = 16675.928684 eV Total energy + Delta-G solvation = -2770.770747 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.52663 -39.28740 -37.81438 -35.41622 -34.93330 -32.85598 -30.33845 -27.10352 -26.19135 -23.69758 -23.50287 -23.17085 -22.14081 -21.13323 -19.58723 -19.11510 -17.64258 -16.95588 -16.64743 -16.29372 -15.84338 -15.68313 -15.58130 -14.70245 -14.56987 -13.98364 -13.67764 -13.45627 -13.26641 -12.79967 -12.53766 -12.47491 -12.41189 -12.00582 -11.99069 -11.89907 -11.79099 -11.67927 -11.50572 -11.17785 -11.13524 -10.81684 -10.70691 -10.02359 -9.76830 -8.72293 -6.07915 1.49392 1.49648 1.77062 2.00733 2.35804 2.68994 2.79203 2.94639 3.15947 3.42932 3.71621 3.80749 3.92853 4.00357 4.08814 4.11145 4.20673 4.29561 4.42635 4.54389 4.67776 4.70187 4.75524 4.79522 4.86630 4.91442 4.96139 5.03315 5.11137 5.15334 5.19267 5.24103 5.26129 5.30771 5.45743 5.80680 5.96009 6.70541 6.96952 7.46315 8.00486 8.50973 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.028033 B = 0.007993 C = 0.007501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.576540 B = 3502.298536 C = 3731.892665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C -0.013 4.013 3 Si 1.111 2.889 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.426 4.426 8 H 0.045 0.955 9 N -0.446 5.446 10 C 0.462 3.538 11 O -0.625 6.625 12 C -0.078 4.078 13 H 0.109 0.891 14 C -0.110 4.110 15 C -0.105 4.105 16 C -0.082 4.082 17 C -0.117 4.117 18 C -0.141 4.141 19 C -0.187 4.187 20 C 0.047 3.953 21 C -0.159 4.159 22 C -0.165 4.165 23 H 0.260 0.740 24 H 0.087 0.913 25 H 0.039 0.961 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.051 0.949 30 H 0.088 0.912 31 H 0.129 0.871 32 H 0.099 0.901 33 H 0.043 0.957 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.136 0.864 37 H 0.110 0.890 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.497 -11.827 -7.821 14.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.217 4.217 3 Si 0.932 3.068 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.553 4.553 8 H 0.063 0.937 9 N -0.165 5.165 10 C 0.253 3.747 11 O -0.511 6.511 12 C -0.100 4.100 13 H 0.126 0.874 14 C -0.148 4.148 15 C -0.142 4.142 16 C -0.119 4.119 17 C -0.118 4.118 18 C -0.177 4.177 19 C -0.224 4.224 20 C -0.058 4.058 21 C -0.196 4.196 22 C -0.203 4.203 23 H 0.070 0.930 24 H 0.105 0.895 25 H 0.057 0.943 26 H 0.114 0.886 27 H 0.102 0.898 28 H 0.112 0.888 29 H 0.070 0.930 30 H 0.106 0.894 31 H 0.147 0.853 32 H 0.118 0.882 33 H 0.062 0.938 34 H 0.106 0.894 35 H 0.117 0.883 36 H 0.154 0.846 37 H 0.129 0.871 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.368 -10.203 -7.431 12.843 hybrid contribution 0.396 -0.857 0.900 1.304 sum -1.972 -11.060 -6.531 12.995 Atomic orbital electron populations 1.70839 1.07577 1.30058 1.43024 1.27502 0.96076 1.04795 0.93374 0.82992 0.74468 0.71418 0.77933 1.19755 1.20815 1.18964 1.20054 1.00772 0.89678 1.44802 0.93716 1.43363 1.42353 1.05401 1.25385 1.21148 0.83481 0.85719 0.84392 1.90460 1.44542 1.87236 1.28840 1.21666 0.98550 0.91780 0.97956 0.87356 1.22344 0.95814 0.95876 1.00771 1.22439 1.00689 0.94358 0.96731 1.21878 0.98746 0.93190 0.98099 1.21651 0.95292 0.97457 0.97370 1.23114 0.90909 1.03401 1.00309 1.22690 1.06727 0.98506 0.94459 1.21535 0.93817 1.08012 0.82394 1.23588 1.04659 0.93124 0.98273 1.23053 1.01816 0.96505 0.98877 0.93037 0.89474 0.94254 0.88634 0.89801 0.88783 0.93006 0.89351 0.85323 0.88220 0.93820 0.89374 0.88251 0.84581 0.87137 0.90243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.87 12.90 21.66 0.28 -50.59 16 2 C -0.01 -0.75 4.98 84.93 0.42 -0.33 16 3 Si 1.11 49.79 30.00 68.60 2.06 51.84 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 7 C -0.43 -25.39 8.68 84.04 0.73 -24.66 16 8 H 0.04 2.93 7.78 -2.91 -0.02 2.90 16 9 N -0.45 -23.54 2.66 -613.13 -1.63 -25.17 16 10 C 0.46 23.59 5.11 87.66 0.45 24.04 16 11 O -0.62 -37.81 15.93 -3.08 -0.05 -37.86 16 12 C -0.08 -2.91 2.07 -10.91 -0.02 -2.93 16 13 H 0.11 3.63 4.57 -2.39 -0.01 3.62 16 14 C -0.11 -3.42 6.04 31.73 0.19 -3.23 16 15 C -0.10 -2.38 6.91 31.93 0.22 -2.16 16 16 C -0.08 -2.17 6.58 31.57 0.21 -1.96 16 17 C -0.12 -3.92 2.12 -52.02 -0.11 -4.03 16 18 C -0.14 -4.05 10.23 30.48 0.31 -3.74 16 19 C -0.19 -7.12 9.29 30.47 0.28 -6.84 16 20 C 0.05 2.04 3.84 44.99 0.17 2.21 16 21 C -0.16 -4.95 7.75 30.60 0.24 -4.71 16 22 C -0.16 -6.11 10.22 30.59 0.31 -5.80 16 23 H 0.26 15.37 6.77 -92.71 -0.63 14.74 16 24 H 0.09 2.27 6.86 -2.39 -0.02 2.25 16 25 H 0.04 1.47 7.69 -2.38 -0.02 1.45 16 26 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.09 1.89 8.11 -2.39 -0.02 1.87 16 29 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.13 2.75 8.14 -2.39 -0.02 2.73 16 32 H 0.10 3.45 8.14 -2.38 -0.02 3.43 16 33 H 0.04 2.12 7.23 -2.39 -0.02 2.10 16 34 H 0.09 4.02 6.97 -2.39 -0.02 4.00 16 35 H 0.10 3.05 5.59 -2.39 -0.01 3.04 16 36 H 0.14 3.13 8.14 -2.39 -0.02 3.11 16 37 H 0.11 3.60 8.14 -2.39 -0.02 3.59 16 38 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -74.83 301.47 5.24 -69.59 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: 1.18 Total: 26.34 kcal Atomic # 6 Polarization: -37.56 SS G_CDS: 3.41 Total: -34.15 kcal Atomic # 7 Polarization: -74.41 SS G_CDS: -1.35 Total: -75.76 kcal Atomic # 8 Polarization: -37.81 SS G_CDS: -0.05 Total: -37.86 kcal Atomic # 14 Polarization: 49.79 SS G_CDS: 2.06 Total: 51.84 kcal Total: -74.83 5.24 -69.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528179756.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.190 kcal (2) G-P(sol) polarization free energy of solvation -74.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds