Wall clock time and date at job start Mon Mar 30 2020 07:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86797 * 120.00440 * 2 1 4 4 H 1.48501 * 109.46741 * 275.06262 * 3 2 1 5 5 H 1.48500 * 109.46861 * 35.05851 * 3 2 1 6 6 H 1.48493 * 109.47309 * 155.06191 * 3 2 1 7 7 C 1.38952 * 119.99280 * 180.27133 * 2 1 3 8 8 H 1.07999 * 120.00178 * 342.07960 * 7 2 1 9 9 N 1.37104 * 119.99574 * 162.08915 * 7 2 1 10 10 C 1.34781 * 119.99548 * 316.34314 * 9 7 2 11 11 O 1.21289 * 120.00314 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99477 * 180.02562 * 10 9 7 13 13 H 1.09000 * 110.05685 * 23.12528 * 12 10 9 14 14 C 1.54387 * 110.07269 * 261.57663 * 12 10 9 15 15 C 1.54920 * 104.22415 * 217.20586 * 14 12 10 16 16 C 1.54987 * 102.82097 * 37.72282 * 15 14 12 17 17 C 1.53483 * 110.07019 * 144.61118 * 12 10 9 18 18 C 1.52557 * 121.08209 * 335.16643 * 17 12 10 19 19 C 1.52573 * 121.05040 * 263.45522 * 17 12 10 20 20 C 1.46500 * 120.00271 * 136.35174 * 9 7 2 21 21 C 1.52997 * 117.49604 * 5.38742 * 20 9 7 22 22 C 1.52991 * 60.00279 * 252.51455 * 21 20 9 23 23 H 0.97002 * 119.99887 * 359.73145 * 1 2 3 24 24 H 1.08999 * 110.47733 * 335.89176 * 14 12 10 25 25 H 1.08998 * 110.48101 * 98.51466 * 14 12 10 26 26 H 1.09006 * 110.74102 * 279.39217 * 15 14 12 27 27 H 1.09004 * 110.74771 * 156.05979 * 15 14 12 28 28 H 1.08998 * 110.51475 * 203.78287 * 16 15 14 29 29 H 1.09009 * 110.50776 * 81.07551 * 16 15 14 30 30 H 1.08999 * 117.51008 * 357.03728 * 18 17 12 31 31 H 1.09003 * 117.50487 * 142.11290 * 18 17 12 32 32 H 1.09007 * 117.50831 * 217.92890 * 19 17 12 33 33 H 1.08994 * 117.51368 * 2.99069 * 19 17 12 34 34 H 1.08993 * 115.55239 * 151.09797 * 20 9 7 35 35 H 1.09000 * 117.50464 * 0.02562 * 21 20 9 36 36 H 1.09004 * 117.49643 * 145.02078 * 21 20 9 37 37 H 1.09004 * 117.50141 * 252.51108 * 22 21 20 38 38 H 1.09005 * 117.52007 * 107.48079 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.3887 2.1080 -1.3946 5 1 1.5033 2.6194 0.8042 6 1 3.5951 1.4115 0.5903 7 6 2.0087 -1.2034 -0.0057 8 1 1.5080 -2.1174 0.2778 9 7 3.3299 -1.2305 -0.3710 10 6 3.7470 -0.5292 -1.4438 11 8 2.9536 0.1262 -2.0857 12 6 5.1990 -0.5595 -1.8456 13 1 5.6748 -1.4614 -1.4606 14 6 5.9236 0.6936 -1.3087 15 6 6.9217 1.0672 -2.4331 16 6 6.1178 0.7610 -3.7223 17 6 5.3236 -0.5101 -3.3746 18 6 4.1895 -0.9936 -4.2732 19 6 5.4963 -1.7870 -4.1917 20 6 4.2883 -2.0219 0.4045 21 6 3.7346 -2.8948 1.5325 22 6 4.5171 -1.6225 1.8637 23 1 -0.4850 0.8401 0.0039 24 1 5.2133 1.5038 -1.1445 25 1 6.4570 0.4602 -0.3872 26 1 7.8153 0.4453 -2.3785 27 1 7.1823 2.1244 -2.3825 28 1 6.7924 0.5734 -4.5576 29 1 5.4405 1.5830 -3.9543 30 1 3.3107 -1.4199 -3.7894 31 1 3.9975 -0.4322 -5.1876 32 1 6.1638 -1.7473 -5.0526 33 1 5.4776 -2.7350 -3.6544 34 1 5.1439 -2.4026 -0.1531 35 1 2.6572 -2.8806 1.6974 36 1 4.2258 -3.8502 1.7169 37 1 5.5233 -1.7408 2.2660 38 1 3.9549 -0.7707 2.2464 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528179759.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:57 Heat of formation + Delta-G solvation = 27.676510 kcal Electronic energy + Delta-G solvation = -19568.510564 eV Core-core repulsion = 16799.000699 eV Total energy + Delta-G solvation = -2769.509866 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.93974 -37.84054 -36.10942 -33.84681 -32.83921 -31.42025 -29.03311 -25.72509 -24.52349 -22.04964 -21.94930 -21.53377 -20.70834 -19.74807 -18.05148 -16.80827 -16.27967 -15.41305 -15.13255 -14.79175 -14.35277 -13.84930 -13.45005 -13.30529 -12.94373 -12.59492 -12.33585 -12.20886 -11.59909 -11.18568 -11.06204 -11.03999 -10.86222 -10.72629 -10.65024 -10.37927 -10.20264 -9.99063 -9.95064 -9.82933 -9.60049 -9.28750 -8.53219 -8.30527 -7.39980 -6.16373 -3.94771 3.31096 3.47405 3.66308 3.80843 4.07244 4.49301 4.51450 4.65471 4.69585 4.99231 5.14670 5.19380 5.28401 5.39607 5.45853 5.51293 5.58717 5.67227 5.75686 5.81522 5.90170 5.93789 6.05050 6.11848 6.18630 6.20698 6.23122 6.31598 6.40425 6.45363 6.50295 6.57650 6.70105 6.75526 6.87832 7.87778 8.04687 8.82485 8.97676 9.46216 9.88544 10.88624 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.020256 B = 0.010705 C = 0.009442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.954274 B = 2615.082426 C = 2964.793067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.092 3.908 3 Si 0.907 3.093 4 H -0.254 1.254 5 H -0.312 1.312 6 H -0.277 1.277 7 C -0.346 4.346 8 H 0.094 0.906 9 N -0.440 5.440 10 C 0.465 3.535 11 O -0.533 6.533 12 C -0.076 4.076 13 H 0.083 0.917 14 C -0.110 4.110 15 C -0.119 4.119 16 C -0.085 4.085 17 C -0.110 4.110 18 C -0.146 4.146 19 C -0.179 4.179 20 C 0.063 3.937 21 C -0.175 4.175 22 C -0.198 4.198 23 H 0.271 0.729 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.117 -1.798 -2.684 14.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.117 4.117 3 Si 0.738 3.262 4 H -0.180 1.180 5 H -0.241 1.241 6 H -0.202 1.202 7 C -0.472 4.472 8 H 0.112 0.888 9 N -0.160 5.160 10 C 0.255 3.745 11 O -0.415 6.415 12 C -0.097 4.097 13 H 0.101 0.899 14 C -0.148 4.148 15 C -0.156 4.156 16 C -0.122 4.122 17 C -0.110 4.110 18 C -0.183 4.183 19 C -0.216 4.216 20 C -0.043 4.043 21 C -0.213 4.213 22 C -0.237 4.237 23 H 0.081 0.919 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.123 0.877 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 13.501 -1.388 -3.024 13.905 hybrid contribution 0.317 0.722 0.255 0.829 sum 13.818 -0.666 -2.769 14.109 Atomic orbital electron populations 1.69737 1.06771 1.28039 1.45872 1.25301 0.94896 0.99298 0.92170 0.86438 0.79129 0.82363 0.78293 1.18008 1.24131 1.20202 1.18732 0.82876 0.95567 1.49994 0.88847 1.43226 1.07148 1.42982 1.22691 1.20144 0.89306 0.83918 0.81153 1.90524 1.55170 1.42516 1.53245 1.21416 0.95127 0.99449 0.93752 0.89887 1.22293 0.97601 0.97044 0.97861 1.22449 0.97648 1.00649 0.94872 1.21847 0.97327 0.96022 0.97054 1.21370 1.02796 0.95001 0.91854 1.22879 0.92619 1.02192 1.00586 1.23050 1.01547 0.95063 1.01960 1.21852 0.95324 0.99733 0.87346 1.23121 1.01861 0.93579 1.02695 1.23243 1.00410 0.99799 1.00258 0.91918 0.91367 0.91326 0.91487 0.91688 0.91989 0.91140 0.87743 0.89420 0.89320 0.89228 0.87178 0.87207 0.89580 0.89661 0.88631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.85 13.96 55.50 0.77 -26.08 16 2 C 0.09 2.73 4.89 -17.47 -0.09 2.64 16 3 Si 0.91 24.55 24.17 -169.99 -4.11 20.44 16 4 H -0.25 -7.23 6.34 56.52 0.36 -6.87 16 5 H -0.31 -8.35 7.11 56.52 0.40 -7.95 16 6 H -0.28 -7.12 7.01 56.52 0.40 -6.72 16 7 C -0.35 -9.73 8.62 -14.93 -0.13 -9.86 16 8 H 0.09 2.75 7.03 -52.49 -0.37 2.39 16 9 N -0.44 -10.59 2.49 -107.73 -0.27 -10.86 16 10 C 0.46 11.00 3.99 -10.98 -0.04 10.95 16 11 O -0.53 -14.61 10.45 5.55 0.06 -14.56 16 12 C -0.08 -1.40 2.70 -90.80 -0.25 -1.64 16 13 H 0.08 1.37 5.77 -51.93 -0.30 1.07 16 14 C -0.11 -1.86 6.36 -24.99 -0.16 -2.02 16 15 C -0.12 -1.60 6.91 -24.67 -0.17 -1.77 16 16 C -0.09 -1.25 6.58 -25.23 -0.17 -1.41 16 17 C -0.11 -1.84 2.06 -154.25 -0.32 -2.16 16 18 C -0.15 -2.59 8.94 -26.91 -0.24 -2.83 16 19 C -0.18 -2.60 10.23 -26.90 -0.28 -2.87 16 20 C 0.06 1.20 5.93 -67.93 -0.40 0.80 16 21 C -0.17 -3.06 9.81 -26.74 -0.26 -3.32 16 22 C -0.20 -3.45 10.32 -26.74 -0.28 -3.73 16 23 H 0.27 7.93 8.31 -40.82 -0.34 7.59 16 24 H 0.07 1.35 7.18 -51.93 -0.37 0.98 16 25 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.76 8.11 -51.93 -0.42 0.34 16 29 H 0.07 1.12 8.14 -51.92 -0.42 0.69 16 30 H 0.10 2.21 6.81 -51.93 -0.35 1.85 16 31 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.09 1.09 8.14 -51.92 -0.42 0.67 16 33 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.11 1.78 6.11 -51.93 -0.32 1.46 16 35 H 0.11 2.20 6.52 -51.93 -0.34 1.86 16 36 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 LS Contribution 296.15 15.07 4.46 4.46 Total: -1.00 -32.45 296.15 -7.74 -40.19 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -5.88 Total: 3.60 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: -2.77 Total: -17.21 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.51 Total: -36.93 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: 0.06 Total: -14.56 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -4.11 Total: 20.44 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.45 -7.74 -40.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528179759.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.870 kcal (2) G-P(sol) polarization free energy of solvation -32.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds