Wall clock time and date at job start Mon Mar 30 2020 07:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86797 * 120.00440 * 2 1 4 4 H 1.48501 * 109.46741 * 275.06262 * 3 2 1 5 5 H 1.48500 * 109.46861 * 35.05851 * 3 2 1 6 6 H 1.48493 * 109.47309 * 155.06191 * 3 2 1 7 7 C 1.38952 * 119.99280 * 180.27133 * 2 1 3 8 8 H 1.07999 * 120.00178 * 342.07960 * 7 2 1 9 9 N 1.37104 * 119.99574 * 162.08915 * 7 2 1 10 10 C 1.34781 * 119.99548 * 316.34314 * 9 7 2 11 11 O 1.21289 * 120.00314 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99477 * 180.02562 * 10 9 7 13 13 H 1.09000 * 110.05685 * 23.12528 * 12 10 9 14 14 C 1.54387 * 110.07269 * 261.57663 * 12 10 9 15 15 C 1.54920 * 104.22415 * 217.20586 * 14 12 10 16 16 C 1.54987 * 102.82097 * 37.72282 * 15 14 12 17 17 C 1.53483 * 110.07019 * 144.61118 * 12 10 9 18 18 C 1.52557 * 121.08209 * 335.16643 * 17 12 10 19 19 C 1.52573 * 121.05040 * 263.45522 * 17 12 10 20 20 C 1.46500 * 120.00271 * 136.35174 * 9 7 2 21 21 C 1.52997 * 117.49604 * 5.38742 * 20 9 7 22 22 C 1.52991 * 60.00279 * 252.51455 * 21 20 9 23 23 H 0.97002 * 119.99887 * 359.73145 * 1 2 3 24 24 H 1.08999 * 110.47733 * 335.89176 * 14 12 10 25 25 H 1.08998 * 110.48101 * 98.51466 * 14 12 10 26 26 H 1.09006 * 110.74102 * 279.39217 * 15 14 12 27 27 H 1.09004 * 110.74771 * 156.05979 * 15 14 12 28 28 H 1.08998 * 110.51475 * 203.78287 * 16 15 14 29 29 H 1.09009 * 110.50776 * 81.07551 * 16 15 14 30 30 H 1.08999 * 117.51008 * 357.03728 * 18 17 12 31 31 H 1.09003 * 117.50487 * 142.11290 * 18 17 12 32 32 H 1.09007 * 117.50831 * 217.92890 * 19 17 12 33 33 H 1.08994 * 117.51368 * 2.99069 * 19 17 12 34 34 H 1.08993 * 115.55239 * 151.09797 * 20 9 7 35 35 H 1.09000 * 117.50464 * 0.02562 * 21 20 9 36 36 H 1.09004 * 117.49643 * 145.02078 * 21 20 9 37 37 H 1.09004 * 117.50141 * 252.51108 * 22 21 20 38 38 H 1.09005 * 117.52007 * 107.48079 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.3887 2.1080 -1.3946 5 1 1.5033 2.6194 0.8042 6 1 3.5951 1.4115 0.5903 7 6 2.0087 -1.2034 -0.0057 8 1 1.5080 -2.1174 0.2778 9 7 3.3299 -1.2305 -0.3710 10 6 3.7470 -0.5292 -1.4438 11 8 2.9536 0.1262 -2.0857 12 6 5.1990 -0.5595 -1.8456 13 1 5.6748 -1.4614 -1.4606 14 6 5.9236 0.6936 -1.3087 15 6 6.9217 1.0672 -2.4331 16 6 6.1178 0.7610 -3.7223 17 6 5.3236 -0.5101 -3.3746 18 6 4.1895 -0.9936 -4.2732 19 6 5.4963 -1.7870 -4.1917 20 6 4.2883 -2.0219 0.4045 21 6 3.7346 -2.8948 1.5325 22 6 4.5171 -1.6225 1.8637 23 1 -0.4850 0.8401 0.0039 24 1 5.2133 1.5038 -1.1445 25 1 6.4570 0.4602 -0.3872 26 1 7.8153 0.4453 -2.3785 27 1 7.1823 2.1244 -2.3825 28 1 6.7924 0.5734 -4.5576 29 1 5.4405 1.5830 -3.9543 30 1 3.3107 -1.4199 -3.7894 31 1 3.9975 -0.4322 -5.1876 32 1 6.1638 -1.7473 -5.0526 33 1 5.4776 -2.7350 -3.6544 34 1 5.1439 -2.4026 -0.1531 35 1 2.6572 -2.8806 1.6974 36 1 4.2258 -3.8502 1.7169 37 1 5.5233 -1.7408 2.2660 38 1 3.9549 -0.7707 2.2464 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528179759.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:57 Heat of formation + Delta-G solvation = 7.292045 kcal Electronic energy + Delta-G solvation = -19569.394501 eV Core-core repulsion = 16799.000699 eV Total energy + Delta-G solvation = -2770.393802 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.54093 -39.32920 -37.79409 -35.09049 -34.88396 -33.38859 -30.48268 -27.25274 -26.23470 -23.53080 -23.29550 -23.01042 -22.07995 -21.36638 -19.66562 -18.51812 -18.00566 -17.27847 -16.50220 -16.28656 -15.81946 -15.55686 -15.15013 -14.85775 -14.67900 -14.48750 -13.72936 -13.62051 -13.42967 -12.88877 -12.56335 -12.46160 -12.34447 -12.18969 -12.07384 -11.93345 -11.75389 -11.61737 -11.51072 -11.18685 -11.07600 -10.81998 -10.63242 -10.13213 -9.33971 -8.44699 -6.20152 1.14927 1.27335 1.42606 1.94328 2.37391 2.55484 2.93130 3.02831 3.21690 3.44064 3.74982 3.85582 3.97591 4.05618 4.15789 4.19393 4.27817 4.32798 4.33751 4.52626 4.75054 4.80024 4.84308 4.87836 4.89494 4.98585 5.03742 5.11711 5.14773 5.19444 5.23953 5.31926 5.34562 5.45188 5.45504 5.68548 5.86528 6.77796 6.92812 7.35622 7.92883 8.63710 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.020256 B = 0.010705 C = 0.009442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.954274 B = 2615.082426 C = 2964.793067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.042 3.958 3 Si 0.959 3.041 4 H -0.282 1.282 5 H -0.311 1.311 6 H -0.257 1.257 7 C -0.332 4.332 8 H 0.067 0.933 9 N -0.458 5.458 10 C 0.460 3.540 11 O -0.581 6.581 12 C -0.072 4.072 13 H 0.112 0.888 14 C -0.115 4.115 15 C -0.106 4.106 16 C -0.085 4.085 17 C -0.123 4.123 18 C -0.179 4.179 19 C -0.138 4.138 20 C 0.042 3.958 21 C -0.171 4.171 22 C -0.183 4.183 23 H 0.270 0.730 24 H 0.028 0.972 25 H 0.092 0.908 26 H 0.101 0.899 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.091 0.909 32 H 0.123 0.877 33 H 0.098 0.902 34 H 0.151 0.849 35 H 0.072 0.928 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.092 -2.783 -2.746 19.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.161 4.161 3 Si 0.790 3.210 4 H -0.209 1.209 5 H -0.241 1.241 6 H -0.181 1.181 7 C -0.460 4.460 8 H 0.085 0.915 9 N -0.179 5.179 10 C 0.252 3.748 11 O -0.465 6.465 12 C -0.093 4.093 13 H 0.130 0.870 14 C -0.153 4.153 15 C -0.143 4.143 16 C -0.123 4.123 17 C -0.123 4.123 18 C -0.216 4.216 19 C -0.174 4.174 20 C -0.062 4.062 21 C -0.208 4.208 22 C -0.222 4.222 23 H 0.079 0.921 24 H 0.047 0.953 25 H 0.111 0.889 26 H 0.119 0.881 27 H 0.097 0.903 28 H 0.113 0.887 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.109 0.891 32 H 0.141 0.859 33 H 0.116 0.884 34 H 0.168 0.832 35 H 0.090 0.910 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 18.513 -2.396 -3.051 18.915 hybrid contribution -1.255 0.906 0.231 1.565 sum 17.258 -1.490 -2.820 17.550 Atomic orbital electron populations 1.69826 1.07970 1.28387 1.49209 1.25922 0.95389 1.01897 0.92916 0.85589 0.79137 0.79722 0.76557 1.20947 1.24117 1.18074 1.18617 0.85280 0.94111 1.47948 0.91547 1.43438 1.06592 1.43955 1.23949 1.21224 0.91569 0.81990 0.80031 1.90491 1.57162 1.44334 1.54475 1.21511 0.90911 1.01644 0.95237 0.87045 1.22369 0.97673 0.94814 1.00427 1.22458 0.97448 1.02278 0.92088 1.21888 0.97313 0.93992 0.99064 1.21587 1.02424 0.97495 0.90808 1.22718 0.92684 1.04967 1.01253 1.23145 0.98370 0.94013 1.01894 1.22252 0.95615 1.00210 0.88111 1.23152 1.00258 0.95781 1.01639 1.23293 1.02268 0.98333 0.98274 0.92074 0.95280 0.88919 0.88097 0.90317 0.88746 0.93614 0.92413 0.89093 0.85892 0.88401 0.83187 0.90953 0.85230 0.84865 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -59.82 13.96 21.66 0.30 -59.51 16 2 C 0.04 2.61 4.89 84.93 0.42 3.03 16 3 Si 0.96 53.18 24.17 68.60 1.66 54.83 16 4 H -0.28 -16.76 6.34 99.48 0.63 -16.13 16 5 H -0.31 -16.89 7.11 99.48 0.71 -16.19 16 6 H -0.26 -13.07 7.01 99.48 0.70 -12.37 16 7 C -0.33 -19.46 8.62 84.04 0.72 -18.73 16 8 H 0.07 4.16 7.03 -2.91 -0.02 4.14 16 9 N -0.46 -22.10 2.49 -613.13 -1.53 -23.63 16 10 C 0.46 21.80 3.99 87.66 0.35 22.15 16 11 O -0.58 -33.11 10.45 -3.06 -0.03 -33.14 16 12 C -0.07 -2.45 2.70 -10.91 -0.03 -2.48 16 13 H 0.11 3.11 5.77 -2.39 -0.01 3.10 16 14 C -0.11 -3.50 6.36 31.72 0.20 -3.30 16 15 C -0.11 -2.34 6.91 31.93 0.22 -2.12 16 16 C -0.09 -2.20 6.58 31.57 0.21 -2.00 16 17 C -0.12 -3.79 2.06 -52.02 -0.11 -3.90 16 18 C -0.18 -6.32 8.94 30.48 0.27 -6.05 16 19 C -0.14 -3.45 10.23 30.48 0.31 -3.14 16 20 C 0.04 1.49 5.93 44.99 0.27 1.76 16 21 C -0.17 -5.59 9.81 30.59 0.30 -5.29 16 22 C -0.18 -5.79 10.32 30.59 0.32 -5.48 16 23 H 0.27 16.77 8.31 -92.71 -0.77 16.00 16 24 H 0.03 1.10 7.18 -2.39 -0.02 1.08 16 25 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 26 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 27 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 28 H 0.09 1.83 8.11 -2.39 -0.02 1.81 16 29 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.06 2.57 6.81 -2.39 -0.02 2.55 16 31 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 32 H 0.12 2.30 8.14 -2.38 -0.02 2.28 16 33 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.15 4.07 6.11 -2.39 -0.01 4.05 16 35 H 0.07 2.94 6.52 -2.39 -0.02 2.92 16 36 H 0.13 3.10 8.14 -2.39 -0.02 3.09 16 37 H 0.13 2.97 8.14 -2.38 -0.02 2.95 16 38 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 Total: -1.00 -77.91 296.15 4.81 -73.11 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.95 Total: 13.89 kcal Atomic # 6 Polarization: -29.00 SS G_CDS: 3.45 Total: -25.55 kcal Atomic # 7 Polarization: -81.92 SS G_CDS: -1.22 Total: -83.14 kcal Atomic # 8 Polarization: -33.11 SS G_CDS: -0.03 Total: -33.14 kcal Atomic # 14 Polarization: 53.18 SS G_CDS: 1.66 Total: 54.83 kcal Total: -77.91 4.81 -73.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528179759.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.398 kcal (2) G-P(sol) polarization free energy of solvation -77.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds