Wall clock time and date at job start Mon Mar 30 2020 05:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00132 * 2 1 4 4 H 1.48500 * 109.46802 * 239.99699 * 3 2 1 5 5 H 1.48498 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47344 * 119.99497 * 3 2 1 7 7 C 1.37881 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99752 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00103 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47066 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99870 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47021 * 274.99736 * 11 10 9 13 13 C 1.52996 * 109.47260 * 179.97438 * 12 11 10 14 14 C 1.53009 * 109.46772 * 60.00221 * 13 12 11 15 15 O 1.42894 * 109.46784 * 179.97438 * 14 13 12 16 16 C 1.42899 * 114.00174 * 269.99638 * 15 14 13 17 17 F 1.39901 * 109.47382 * 300.00610 * 16 15 14 18 18 F 1.39906 * 109.47098 * 60.00645 * 16 15 14 19 19 C 1.53003 * 109.47047 * 299.99909 * 14 13 12 20 20 C 1.52996 * 109.47023 * 60.00083 * 19 14 13 21 21 H 0.96997 * 120.00392 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47558 * 59.99825 * 9 7 2 23 23 H 1.08998 * 109.47216 * 299.99488 * 9 7 2 24 24 H 1.00901 * 110.99869 * 56.04737 * 10 9 7 25 25 H 1.09000 * 109.47473 * 34.99539 * 11 10 9 26 26 H 1.08996 * 109.47234 * 300.00507 * 12 11 10 27 27 H 1.09007 * 109.47106 * 60.00477 * 12 11 10 28 28 H 1.08996 * 109.47580 * 300.00502 * 13 12 11 29 29 H 1.08995 * 109.47412 * 179.97438 * 13 12 11 30 30 H 1.08996 * 109.46838 * 59.99827 * 14 13 12 31 31 H 1.08999 * 109.47545 * 180.02562 * 16 15 14 32 32 H 1.09000 * 109.46837 * 299.99990 * 19 14 13 33 33 H 1.08998 * 109.46944 * 179.97438 * 19 14 13 34 34 H 1.08995 * 109.47174 * 180.02562 * 20 19 14 35 35 H 1.08996 * 109.47449 * 59.99724 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6158 0.0005 11 6 1.5053 -4.9071 -0.0001 12 6 1.1512 -5.2959 1.4367 13 6 0.4212 -6.6405 1.4361 14 6 1.3271 -7.7122 0.8262 15 8 0.6456 -8.9682 0.8262 16 6 0.8534 -9.7424 2.0092 17 9 2.2181 -10.0132 2.1555 18 9 0.3983 -9.0259 3.1213 19 6 1.6812 -7.3234 -0.6106 20 6 2.4111 -5.9788 -0.6099 21 1 -0.4850 0.8400 -0.0004 22 1 0.6246 -2.5572 -0.8896 23 1 0.6240 -2.5568 0.8903 24 1 2.8405 -3.5487 0.7819 25 1 0.5922 -4.8250 -0.5897 26 1 2.0642 -5.3779 2.0264 27 1 0.5054 -4.5326 1.8711 28 1 -0.4918 -6.5581 0.8465 29 1 0.1694 -6.9177 2.4597 30 1 2.2401 -7.7947 1.4158 31 1 0.3036 -10.6802 1.9310 32 1 0.7681 -7.2410 -1.2001 33 1 2.3268 -8.0867 -1.0449 34 1 2.6629 -5.7016 -1.6335 35 1 3.3241 -6.0612 -0.0203 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591770433.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:21 Heat of formation + Delta-G solvation = -181.673272 kcal Electronic energy + Delta-G solvation = -18638.079987 eV Core-core repulsion = 15305.262504 eV Total energy + Delta-G solvation = -3332.817483 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.128 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.25667 -47.36162 -39.24797 -36.98810 -34.01393 -32.16205 -30.65493 -28.71790 -26.12405 -24.96919 -22.63008 -22.06053 -21.00615 -19.94213 -18.42291 -17.93753 -17.82443 -16.47424 -15.50712 -14.90191 -14.64075 -14.46111 -14.11748 -13.89346 -13.74763 -13.59596 -13.38351 -12.91674 -12.66399 -12.33258 -12.23541 -11.96826 -11.49234 -11.35479 -11.18862 -10.98869 -10.80123 -10.61752 -10.57974 -10.17600 -9.89555 -9.75097 -9.16180 -8.47445 -7.25759 -6.02427 -4.04459 2.83348 3.34123 3.37931 3.41071 3.48294 4.29396 4.43366 4.53135 4.73109 4.82146 4.99949 5.19449 5.31932 5.33463 5.37481 5.54731 5.60760 5.67145 5.94934 6.01613 6.09348 6.15799 6.27952 6.34595 6.51971 6.65692 6.67067 7.27462 7.44955 7.79429 8.14136 8.40785 8.62973 9.04797 9.60445 11.08578 Molecular weight = 249.13amu Principal moments of inertia in cm(-1) A = 0.050541 B = 0.004036 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.876412 B = 6936.658774 C = 7113.876476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.516 4.516 8 H 0.061 0.939 9 C 0.194 3.806 10 N -0.685 5.685 11 C 0.084 3.916 12 C -0.145 4.145 13 C -0.137 4.137 14 C 0.080 3.920 15 O -0.382 6.382 16 C 0.403 3.597 17 F -0.211 7.211 18 F -0.208 7.208 19 C -0.111 4.111 20 C -0.103 4.103 21 H 0.262 0.738 22 H 0.027 0.973 23 H -0.013 1.013 24 H 0.329 0.671 25 H 0.072 0.928 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.163 0.837 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.159 -19.687 3.225 19.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.554 4.554 8 H 0.079 0.921 9 C 0.068 3.932 10 N -0.314 5.314 11 C -0.027 4.027 12 C -0.184 4.184 13 C -0.176 4.176 14 C 0.024 3.976 15 O -0.304 6.304 16 C 0.311 3.689 17 F -0.193 7.193 18 F -0.190 7.190 19 C -0.149 4.149 20 C -0.141 4.141 21 H 0.071 0.929 22 H 0.045 0.955 23 H 0.005 0.995 24 H 0.145 0.855 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.180 0.820 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.997 -19.559 2.400 19.731 hybrid contribution 0.175 0.989 1.307 1.648 sum 1.172 -18.570 3.706 18.972 Atomic orbital electron populations 1.69949 1.06083 1.26887 1.50851 1.24984 0.94865 0.99341 0.95336 0.86547 0.79427 0.82695 0.78644 1.20155 1.21352 1.20284 1.21168 0.93483 0.90338 1.50438 0.92055 1.19573 0.90615 0.87323 0.95714 1.60745 1.20838 1.01032 1.48753 1.21585 0.96683 0.90769 0.93653 1.22270 1.00486 0.96085 0.99586 1.22096 0.99250 0.94899 1.01335 1.22472 0.94781 0.81183 0.99176 1.88415 1.71988 1.32628 1.37321 1.23136 0.77569 0.92270 0.75917 1.93053 1.36647 1.94062 1.95543 1.93064 1.88745 1.81171 1.56031 1.21602 1.01489 0.97962 0.93822 1.21494 0.98166 0.92115 1.02329 0.92869 0.95524 0.99497 0.85471 0.90932 0.92159 0.91072 0.90946 0.91326 0.91030 0.82011 0.90854 0.91344 0.90493 0.92146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.67 9.32 -34.44 -0.32 -14.99 16 8 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.19 5.08 5.24 -4.97 -0.03 5.06 16 10 N -0.69 -14.50 6.24 -107.99 -0.67 -15.17 16 11 C 0.08 1.45 2.47 -67.71 -0.17 1.29 16 12 C -0.14 -2.27 5.17 -26.73 -0.14 -2.41 16 13 C -0.14 -1.87 5.39 -26.73 -0.14 -2.02 16 14 C 0.08 1.00 2.40 -26.73 -0.06 0.94 16 15 O -0.38 -4.38 10.29 -35.23 -0.36 -4.75 16 16 C 0.40 3.69 6.26 101.05 0.63 4.32 16 17 F -0.21 -2.24 16.63 2.25 0.04 -2.21 16 18 F -0.21 -2.30 15.46 2.25 0.03 -2.27 16 19 C -0.11 -1.36 5.57 -26.73 -0.15 -1.51 16 20 C -0.10 -1.47 5.53 -26.73 -0.15 -1.61 16 21 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 22 H 0.03 0.75 8.05 -51.93 -0.42 0.34 16 23 H -0.01 -0.35 7.44 -51.93 -0.39 -0.74 16 24 H 0.33 6.69 8.47 -39.29 -0.33 6.36 16 25 H 0.07 1.35 7.80 -51.93 -0.40 0.94 16 26 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 27 H 0.07 1.25 7.46 -51.92 -0.39 0.86 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.07 0.92 6.50 -51.93 -0.34 0.58 16 30 H 0.07 0.90 7.20 -51.93 -0.37 0.53 16 31 H 0.16 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 291.59 15.07 4.39 4.39 Total: -1.00 -30.53 291.59 -6.62 -37.16 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -5.14 Total: 1.73 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: -0.62 Total: -9.43 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: 0.06 Total: -41.39 kcal Atomic # 8 Polarization: -4.38 SS G_CDS: -0.36 Total: -4.75 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.07 Total: -4.47 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.53 -6.62 -37.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591770433.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.518 kcal (2) G-P(sol) polarization free energy of solvation -30.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds