Wall clock time and date at job start Mon Mar 30 2020 05:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00132 * 2 1 4 4 H 1.48500 * 109.46802 * 239.99699 * 3 2 1 5 5 H 1.48498 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47344 * 119.99497 * 3 2 1 7 7 C 1.37881 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99752 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00103 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47066 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99870 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47021 * 274.99736 * 11 10 9 13 13 C 1.52996 * 109.47260 * 179.97438 * 12 11 10 14 14 C 1.53009 * 109.46772 * 60.00221 * 13 12 11 15 15 O 1.42894 * 109.46784 * 179.97438 * 14 13 12 16 16 C 1.42899 * 114.00174 * 269.99638 * 15 14 13 17 17 F 1.39901 * 109.47382 * 300.00610 * 16 15 14 18 18 F 1.39906 * 109.47098 * 60.00645 * 16 15 14 19 19 C 1.53003 * 109.47047 * 299.99909 * 14 13 12 20 20 C 1.52996 * 109.47023 * 60.00083 * 19 14 13 21 21 H 0.96997 * 120.00392 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47558 * 59.99825 * 9 7 2 23 23 H 1.08998 * 109.47216 * 299.99488 * 9 7 2 24 24 H 1.00901 * 110.99869 * 56.04737 * 10 9 7 25 25 H 1.09000 * 109.47473 * 34.99539 * 11 10 9 26 26 H 1.08996 * 109.47234 * 300.00507 * 12 11 10 27 27 H 1.09007 * 109.47106 * 60.00477 * 12 11 10 28 28 H 1.08996 * 109.47580 * 300.00502 * 13 12 11 29 29 H 1.08995 * 109.47412 * 179.97438 * 13 12 11 30 30 H 1.08996 * 109.46838 * 59.99827 * 14 13 12 31 31 H 1.08999 * 109.47545 * 180.02562 * 16 15 14 32 32 H 1.09000 * 109.46837 * 299.99990 * 19 14 13 33 33 H 1.08998 * 109.46944 * 179.97438 * 19 14 13 34 34 H 1.08995 * 109.47174 * 180.02562 * 20 19 14 35 35 H 1.08996 * 109.47449 * 59.99724 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6158 0.0005 11 6 1.5053 -4.9071 -0.0001 12 6 1.1512 -5.2959 1.4367 13 6 0.4212 -6.6405 1.4361 14 6 1.3271 -7.7122 0.8262 15 8 0.6456 -8.9682 0.8262 16 6 0.8534 -9.7424 2.0092 17 9 2.2181 -10.0132 2.1555 18 9 0.3983 -9.0259 3.1213 19 6 1.6812 -7.3234 -0.6106 20 6 2.4111 -5.9788 -0.6099 21 1 -0.4850 0.8400 -0.0004 22 1 0.6246 -2.5572 -0.8896 23 1 0.6240 -2.5568 0.8903 24 1 2.8405 -3.5487 0.7819 25 1 0.5922 -4.8250 -0.5897 26 1 2.0642 -5.3779 2.0264 27 1 0.5054 -4.5326 1.8711 28 1 -0.4918 -6.5581 0.8465 29 1 0.1694 -6.9177 2.4597 30 1 2.2401 -7.7947 1.4158 31 1 0.3036 -10.6802 1.9310 32 1 0.7681 -7.2410 -1.2001 33 1 2.3268 -8.0867 -1.0449 34 1 2.6629 -5.7016 -1.6335 35 1 3.3241 -6.0612 -0.0203 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591770433.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:21 Heat of formation + Delta-G solvation = -202.577302 kcal Electronic energy + Delta-G solvation = -18638.986454 eV Core-core repulsion = 15305.262504 eV Total energy + Delta-G solvation = -3333.723950 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.128 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.02167 -48.13836 -40.37636 -38.18724 -35.75014 -34.07440 -31.82273 -30.26583 -27.73144 -26.05662 -24.05927 -23.57807 -22.48339 -21.16792 -19.29871 -18.78569 -18.60309 -18.47605 -16.84615 -16.62299 -15.93732 -15.61459 -15.45366 -15.01999 -14.85108 -14.77848 -14.50072 -14.12618 -14.08147 -13.79640 -13.43687 -13.24311 -13.12447 -12.80163 -12.73115 -12.48024 -12.26797 -12.14559 -11.94505 -11.78447 -11.41720 -11.21226 -10.94553 -10.65246 -9.05413 -8.22347 -6.33847 1.41159 1.44816 1.52800 2.05951 2.40178 2.75782 3.10846 3.49252 3.57883 3.64834 3.78728 3.92815 4.05980 4.09820 4.19329 4.34416 4.43172 4.46305 4.70314 4.77259 4.89623 5.00431 5.05945 5.12317 5.14989 5.27672 5.34573 5.42693 5.62718 5.65077 6.03174 6.46697 6.73903 6.90650 7.37309 8.88967 Molecular weight = 249.13amu Principal moments of inertia in cm(-1) A = 0.050541 B = 0.004036 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.876412 B = 6936.658774 C = 7113.876476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.973 3.027 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.538 4.538 8 H 0.065 0.935 9 C 0.211 3.789 10 N -0.683 5.683 11 C 0.082 3.918 12 C -0.137 4.137 13 C -0.131 4.131 14 C 0.084 3.916 15 O -0.387 6.387 16 C 0.396 3.604 17 F -0.220 7.220 18 F -0.221 7.221 19 C -0.104 4.104 20 C -0.093 4.093 21 H 0.265 0.735 22 H -0.004 1.004 23 H -0.038 1.038 24 H 0.335 0.665 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.043 0.957 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.214 0.786 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.323 -20.747 3.352 21.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.797 3.203 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.576 4.576 8 H 0.083 0.917 9 C 0.083 3.917 10 N -0.312 5.312 11 C -0.029 4.029 12 C -0.177 4.177 13 C -0.169 4.169 14 C 0.028 3.972 15 O -0.309 6.309 16 C 0.306 3.694 17 F -0.202 7.202 18 F -0.203 7.203 19 C -0.142 4.142 20 C -0.131 4.131 21 H 0.074 0.926 22 H 0.014 0.986 23 H -0.020 1.020 24 H 0.152 0.848 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.062 0.938 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.230 0.770 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.174 -20.652 2.531 20.920 hybrid contribution -0.223 1.247 1.283 1.803 sum 1.950 -19.405 3.814 19.872 Atomic orbital electron populations 1.70085 1.07854 1.28058 1.51494 1.25960 0.95768 1.03413 0.94542 0.85379 0.78101 0.77599 0.79179 1.19279 1.20818 1.19081 1.21553 0.93852 0.91528 1.50697 0.91701 1.19187 0.90638 0.88896 0.92997 1.60647 1.20120 1.01354 1.49113 1.21686 0.96513 0.89905 0.94766 1.22122 1.00648 0.96656 0.98225 1.22018 0.99070 0.94096 1.01735 1.22305 0.94473 0.81460 0.98991 1.88407 1.71880 1.31962 1.38617 1.23951 0.77575 0.93277 0.74634 1.93036 1.37596 1.94027 1.95505 1.93039 1.88844 1.81711 1.56714 1.21530 1.01582 0.97115 0.93991 1.21380 0.97943 0.91948 1.01862 0.92633 0.98619 1.02029 0.84797 0.92908 0.91099 0.93792 0.91519 0.90903 0.90751 0.77038 0.91073 0.89202 0.90843 0.91102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.19 13.29 21.45 0.28 -56.91 16 2 C 0.00 0.08 5.46 84.66 0.46 0.54 16 3 Si 0.97 44.61 29.54 68.60 2.03 46.63 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.54 -31.08 9.32 25.60 0.24 -30.84 16 8 H 0.06 3.62 7.81 -2.91 -0.02 3.59 16 9 C 0.21 11.46 5.24 85.55 0.45 11.91 16 10 N -0.68 -29.48 6.24 -495.56 -3.09 -32.57 16 11 C 0.08 2.86 2.47 44.92 0.11 2.97 16 12 C -0.14 -4.35 5.17 30.59 0.16 -4.19 16 13 C -0.13 -3.48 5.39 30.60 0.17 -3.32 16 14 C 0.08 1.95 2.40 30.60 0.07 2.02 16 15 O -0.39 -7.91 10.29 -148.98 -1.53 -9.44 16 16 C 0.40 6.15 6.26 113.37 0.71 6.86 16 17 F -0.22 -4.12 16.63 44.97 0.75 -3.37 16 18 F -0.22 -4.46 15.46 44.97 0.70 -3.76 16 19 C -0.10 -2.37 5.57 30.59 0.17 -2.19 16 20 C -0.09 -2.54 5.53 30.59 0.17 -2.37 16 21 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 22 H 0.00 -0.26 8.05 -2.39 -0.02 -0.28 16 23 H -0.04 -2.21 7.44 -2.39 -0.02 -2.23 16 24 H 0.33 13.71 8.47 -89.69 -0.76 12.95 16 25 H 0.05 2.05 7.80 -2.39 -0.02 2.03 16 26 H 0.07 2.08 8.13 -2.39 -0.02 2.06 16 27 H 0.04 1.61 7.46 -2.38 -0.02 1.60 16 28 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.07 1.89 6.50 -2.39 -0.02 1.87 16 30 H 0.07 1.70 7.20 -2.39 -0.02 1.68 16 31 H 0.21 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.07 1.80 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -66.39 291.59 2.16 -64.23 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 0.33 Total: 13.81 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: 2.71 Total: -18.62 kcal Atomic # 7 Polarization: -86.67 SS G_CDS: -2.81 Total: -89.47 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: -1.53 Total: -9.44 kcal Atomic # 9 Polarization: -8.58 SS G_CDS: 1.44 Total: -7.13 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -66.39 2.16 -64.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591770433.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.345 kcal (2) G-P(sol) polarization free energy of solvation -66.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds