Wall clock time and date at job start Mon Mar 30 2020 06:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50707 * 110.63926 * 2 1 4 4 C 1.38275 * 119.98354 * 118.03639 * 3 2 1 5 5 C 1.38227 * 120.04691 * 179.72598 * 4 3 2 6 6 C 1.38224 * 120.02582 * 0.55029 * 5 4 3 7 7 C 1.38438 * 119.97253 * 359.72495 * 6 5 4 8 8 F 1.35096 * 120.02655 * 180.02562 * 7 6 5 9 9 C 1.38167 * 119.98655 * 298.31297 * 3 2 1 10 10 C 1.55163 * 110.72186 * 123.33308 * 2 1 3 11 11 C 1.55126 * 101.48215 * 82.69842 * 10 2 1 12 12 N 1.47427 * 104.72537 * 37.29624 * 11 10 2 13 13 C 1.36935 * 125.65294 * 155.81680 * 12 11 10 14 14 H 1.07995 * 120.00215 * 196.01616 * 13 12 11 15 15 C 1.38814 * 119.99666 * 16.01479 * 13 12 11 16 16 N 1.31625 * 119.99876 * 201.21106 * 15 13 12 17 17 Si 1.86799 * 120.00253 * 21.20771 * 15 13 12 18 18 H 1.48497 * 109.47357 * 275.67778 * 17 15 13 19 19 H 1.48507 * 109.46827 * 35.67423 * 17 15 13 20 20 H 1.48498 * 109.47151 * 155.67409 * 17 15 13 21 21 C 1.47022 * 108.69877 * 335.55359 * 12 11 10 22 22 H 1.09005 * 109.46777 * 181.68787 * 1 2 3 23 23 H 1.09001 * 109.47166 * 301.68447 * 1 2 3 24 24 H 1.08996 * 109.47186 * 61.68599 * 1 2 3 25 25 H 1.07991 * 119.97486 * 359.97438 * 4 3 2 26 26 H 1.07993 * 119.98781 * 180.27822 * 5 4 3 27 27 H 1.07992 * 120.01560 * 179.70395 * 6 5 4 28 28 H 1.08002 * 120.01763 * 359.97438 * 9 3 2 29 29 H 1.09000 * 111.00220 * 200.93871 * 10 2 1 30 30 H 1.09003 * 111.00376 * 324.79115 * 10 2 1 31 31 H 1.09004 * 110.49981 * 278.45425 * 11 10 2 32 32 H 1.09001 * 110.34649 * 156.06022 * 11 10 2 33 33 H 0.97000 * 119.99874 * 180.02562 * 16 15 13 34 34 H 1.09003 * 109.88150 * 120.70725 * 21 12 11 35 35 H 1.09010 * 109.88017 * 241.86666 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0612 1.4103 0.0000 4 6 2.8316 1.8586 1.0571 5 6 3.3242 3.1501 1.0558 6 6 3.0377 3.9986 0.0029 7 6 2.2617 3.5526 -1.0533 8 9 1.9814 4.3808 -2.0831 9 6 1.7735 2.2566 -1.0536 10 6 2.0790 -0.7975 1.2125 11 6 2.0076 -2.2536 0.6823 12 7 2.3717 -2.1518 -0.7426 13 6 2.8933 -3.1610 -1.5072 14 1 3.3651 -2.9343 -2.4518 15 6 2.8157 -4.4756 -1.0679 16 7 3.6434 -5.3796 -1.5475 17 14 1.5366 -4.9615 0.2038 18 1 2.0565 -4.6723 1.5644 19 1 0.2912 -4.1857 -0.0254 20 1 1.2452 -6.4126 0.0833 21 6 2.0761 -0.7891 -1.2085 22 1 -0.3633 -1.0273 0.0303 23 1 -0.3633 0.5398 0.8745 24 1 -0.3633 0.4874 -0.9047 25 1 3.0519 1.1979 1.8825 26 1 3.9296 3.4978 1.8798 27 1 3.4187 5.0091 0.0043 28 1 1.1683 1.9076 -1.8772 29 1 3.1062 -0.5096 1.4367 30 1 1.4396 -0.6697 2.0860 31 1 0.9975 -2.6493 0.7884 32 1 2.7208 -2.8852 1.2119 33 1 3.5889 -6.2983 -1.2408 34 1 2.9869 -0.3179 -1.5781 35 1 1.3263 -0.8221 -1.9991 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593044955.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:59 Heat of formation + Delta-G solvation = -13.757857 kcal Electronic energy + Delta-G solvation = -18206.800681 eV Core-core repulsion = 15312.033781 eV Total energy + Delta-G solvation = -2894.766900 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -49.86855 -41.07675 -38.83276 -35.32112 -33.35422 -31.83412 -30.70999 -30.05404 -27.99283 -25.81679 -23.79968 -23.58764 -22.28276 -20.41503 -19.01254 -18.09937 -17.20429 -17.06981 -16.93853 -16.62294 -16.49499 -15.44831 -15.33218 -14.81266 -14.56538 -14.35113 -14.11756 -13.95545 -13.58318 -13.13949 -12.99876 -12.86386 -12.75609 -12.62976 -12.28521 -12.05649 -11.83222 -11.59697 -11.37338 -11.27736 -10.84538 -9.86371 -9.58807 -9.06980 -8.17885 -5.44584 0.23887 0.30376 1.29208 1.38621 1.47426 2.40673 2.66461 3.04104 3.17838 3.33629 3.55615 3.70467 3.92202 4.01917 4.13660 4.19922 4.28072 4.40121 4.44890 4.54402 4.73814 4.80655 4.86081 4.96851 5.02060 5.07175 5.10807 5.14636 5.19674 5.23263 5.38624 5.45103 5.63905 5.65509 5.99593 6.08929 6.75026 7.53046 8.08968 9.02193 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.037137 B = 0.005899 C = 0.005714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.785517 B = 4745.106459 C = 4899.157566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.028 4.028 3 C -0.037 4.037 4 C -0.131 4.131 5 C -0.083 4.083 6 C -0.160 4.160 7 C 0.079 3.921 8 F -0.151 7.151 9 C -0.159 4.159 10 C -0.111 4.111 11 C 0.097 3.903 12 N -0.627 5.627 13 C -0.237 4.237 14 H 0.055 0.945 15 C -0.040 4.040 16 N -0.960 5.960 17 Si 0.952 3.048 18 H -0.265 1.265 19 H -0.267 1.267 20 H -0.310 1.310 21 C 0.147 3.853 22 H 0.048 0.952 23 H 0.081 0.919 24 H 0.062 0.938 25 H 0.149 0.851 26 H 0.165 0.835 27 H 0.154 0.846 28 H 0.129 0.871 29 H 0.086 0.914 30 H 0.107 0.893 31 H 0.030 0.970 32 H 0.042 0.958 33 H 0.262 0.738 34 H 0.022 0.978 35 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.941 19.277 9.248 21.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.029 4.029 3 C -0.038 4.038 4 C -0.149 4.149 5 C -0.100 4.100 6 C -0.178 4.178 7 C 0.060 3.940 8 F -0.130 7.130 9 C -0.178 4.178 10 C -0.149 4.149 11 C -0.028 4.028 12 N -0.353 5.353 13 C -0.365 4.365 14 H 0.073 0.927 15 C -0.234 4.234 16 N -0.607 5.607 17 Si 0.780 3.220 18 H -0.190 1.190 19 H -0.192 1.192 20 H -0.238 1.238 21 C 0.022 3.978 22 H 0.067 0.933 23 H 0.099 0.901 24 H 0.081 0.919 25 H 0.167 0.833 26 H 0.183 0.817 27 H 0.172 0.828 28 H 0.147 0.853 29 H 0.104 0.896 30 H 0.125 0.875 31 H 0.047 0.953 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.040 0.960 35 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -4.879 19.111 9.140 21.739 hybrid contribution -0.406 -0.858 -0.539 1.091 sum -5.285 18.254 8.600 20.859 Atomic orbital electron populations 1.21777 0.91737 1.01878 1.03082 1.20428 0.96656 0.90346 0.95462 1.19477 0.96603 0.93672 0.94033 1.21553 0.97451 0.96990 0.98917 1.21361 0.98057 0.92474 0.98152 1.21421 1.00106 1.02534 0.93761 1.17893 1.00768 0.88598 0.86768 1.91461 1.92402 1.71500 1.57625 1.21030 1.03451 0.92675 1.00651 1.22996 1.02579 0.92197 0.97128 1.22221 0.97454 0.98219 0.84868 1.44864 1.74904 1.08851 1.06720 1.18594 1.28884 0.86074 1.02964 0.92719 1.25618 1.00808 0.95414 1.01549 1.69970 1.38231 1.03430 1.49105 0.85919 0.80982 0.75231 0.79864 1.19030 1.19223 1.23837 1.21524 0.96755 0.84267 0.95210 0.93290 0.90053 0.91893 0.83312 0.81749 0.82819 0.85293 0.89586 0.87498 0.95293 0.93936 0.92864 0.95972 0.95492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 8.23 71.98 0.59 -2.70 16 2 C -0.03 -0.83 0.72 -51.74 -0.04 -0.87 16 3 C -0.04 -0.95 4.63 -19.87 -0.09 -1.04 16 4 C -0.13 -2.72 9.00 22.28 0.20 -2.52 16 5 C -0.08 -1.40 10.04 22.26 0.22 -1.18 16 6 C -0.16 -3.03 10.03 22.31 0.22 -2.81 16 7 C 0.08 1.90 7.30 22.38 0.16 2.06 16 8 F -0.15 -3.89 17.27 44.97 0.78 -3.11 16 9 C -0.16 -4.10 8.99 22.31 0.20 -3.90 16 10 C -0.11 -3.24 5.05 32.06 0.16 -3.08 16 11 C 0.10 3.97 4.36 86.93 0.38 4.35 16 12 N -0.63 -30.54 3.24 -691.54 -2.24 -32.78 16 13 C -0.24 -14.02 10.60 84.03 0.89 -13.13 16 14 H 0.05 3.54 8.06 -2.91 -0.02 3.52 16 15 C -0.04 -2.40 5.45 84.86 0.46 -1.94 16 16 N -0.96 -61.78 13.97 21.65 0.30 -61.47 16 17 Si 0.95 47.20 24.23 68.60 1.66 48.86 16 18 H -0.26 -12.13 6.39 99.48 0.64 -11.49 16 19 H -0.27 -12.68 6.45 99.48 0.64 -12.04 16 20 H -0.31 -15.55 7.11 99.48 0.71 -14.84 16 21 C 0.15 5.86 6.14 86.73 0.53 6.40 16 22 H 0.05 1.43 7.42 -2.38 -0.02 1.41 16 23 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.06 1.53 7.66 -2.39 -0.02 1.51 16 25 H 0.15 2.62 5.88 -2.92 -0.02 2.61 16 26 H 0.16 1.66 8.06 -2.91 -0.02 1.63 16 27 H 0.15 2.15 8.06 -2.91 -0.02 2.12 16 28 H 0.13 3.33 7.77 -2.91 -0.02 3.30 16 29 H 0.09 2.36 6.37 -2.39 -0.02 2.35 16 30 H 0.11 2.37 8.04 -2.39 -0.02 2.35 16 31 H 0.03 1.21 5.11 -2.38 -0.01 1.20 16 32 H 0.04 1.89 6.24 -2.39 -0.01 1.87 16 33 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 34 H 0.02 0.93 7.82 -2.39 -0.02 0.91 16 35 H 0.03 1.10 7.84 -2.38 -0.02 1.08 16 Total: -1.00 -69.86 279.98 5.35 -64.51 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: 0.95 Total: 4.35 kcal Atomic # 6 Polarization: -24.26 SS G_CDS: 3.90 Total: -20.35 kcal Atomic # 7 Polarization: -92.32 SS G_CDS: -1.94 Total: -94.25 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.78 Total: -3.11 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 1.66 Total: 48.86 kcal Total: -69.86 5.35 -64.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593044955.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.753 kcal (2) G-P(sol) polarization free energy of solvation -69.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds