Wall clock time and date at job start Mon Mar 30 2020 06:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 110.64122 * 2 1 4 4 C 1.38263 * 119.98974 * 61.68313 * 3 2 1 5 5 C 1.38227 * 120.05156 * 179.97438 * 4 3 2 6 6 C 1.38219 * 120.02402 * 0.30685 * 5 4 3 7 7 C 1.38438 * 119.97316 * 359.46494 * 6 5 4 8 8 F 1.35104 * 120.02417 * 180.25968 * 7 6 5 9 9 C 1.38176 * 119.98501 * 241.71399 * 3 2 1 10 10 C 1.55153 * 110.87326 * 236.74668 * 2 1 3 11 11 C 1.54910 * 101.58516 * 277.06755 * 10 2 1 12 12 N 1.47430 * 104.82992 * 322.99109 * 11 10 2 13 13 C 1.36936 * 125.64657 * 204.09295 * 12 11 10 14 14 H 1.07993 * 119.99850 * 180.02562 * 13 12 11 15 15 C 1.38813 * 119.99895 * 0.03857 * 13 12 11 16 16 N 1.31620 * 120.00154 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99994 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47307 * 59.99586 * 17 15 13 19 19 H 1.48496 * 109.47193 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46694 * 300.00109 * 17 15 13 21 21 C 1.47016 * 108.70182 * 24.12705 * 12 11 10 22 22 H 1.08994 * 109.46936 * 60.70658 * 1 2 3 23 23 H 1.09005 * 109.46746 * 180.70690 * 1 2 3 24 24 H 1.09002 * 109.47070 * 300.69805 * 1 2 3 25 25 H 1.07999 * 119.97831 * 0.02562 * 4 3 2 26 26 H 1.08002 * 119.98464 * 180.02562 * 5 4 3 27 27 H 1.08004 * 120.01020 * 179.72204 * 6 5 4 28 28 H 1.08000 * 120.01241 * 0.02562 * 9 3 2 29 29 H 1.08999 * 111.00119 * 35.14138 * 10 2 1 30 30 H 1.08996 * 111.00476 * 158.99064 * 10 2 1 31 31 H 1.08994 * 110.36960 * 204.15039 * 11 10 2 32 32 H 1.08998 * 110.36615 * 81.82464 * 11 10 2 33 33 H 0.97001 * 120.00116 * 179.97438 * 16 15 13 34 34 H 1.09002 * 109.88153 * 239.52402 * 21 12 11 35 35 H 1.09004 * 110.01267 * 118.43488 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0613 1.4103 0.0000 4 6 1.7733 2.2572 1.0542 5 6 2.2603 3.5509 1.0558 6 6 3.0306 4.0011 0.0002 7 6 3.3235 3.1525 -1.0537 8 9 4.0808 3.5899 -2.0835 9 6 2.8354 1.8566 -1.0539 10 6 2.0828 -0.7949 -1.2123 11 6 2.0192 -2.2502 -0.6852 12 7 2.3757 -2.1506 0.7419 13 6 2.8986 -3.1594 1.5061 14 1 3.1265 -2.9854 2.5473 15 6 3.1358 -4.4055 0.9424 16 7 2.8587 -4.6174 -0.3267 17 14 3.8485 -5.7819 1.9852 18 1 2.9329 -6.0692 3.1185 19 1 4.0059 -7.0021 1.1537 20 1 5.1738 -5.3682 2.5121 21 6 2.0760 -0.7891 1.2087 22 1 -0.3633 0.5028 -0.8962 23 1 -0.3633 -1.0277 0.0127 24 1 -0.3633 0.5246 0.8837 25 1 1.1681 1.9076 1.8775 26 1 2.0351 4.2114 1.8800 27 1 3.4073 5.0133 -0.0005 28 1 3.0595 1.1951 -1.8777 29 1 1.4445 -0.6678 -2.0867 30 1 3.1096 -0.5044 -1.4346 31 1 2.7382 -2.8766 -1.2130 32 1 1.0117 -2.6506 -0.7974 33 1 3.0249 -5.4881 -0.7207 34 1 2.9851 -0.3161 1.5801 35 1 1.3262 -0.8223 1.9991 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593044956.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:03 Heat of formation + Delta-G solvation = 1.780373 kcal Electronic energy + Delta-G solvation = -18147.965606 eV Core-core repulsion = 15253.872495 eV Total energy + Delta-G solvation = -2894.093111 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.78143 -39.69481 -37.23812 -33.52329 -31.03993 -30.64083 -29.28822 -28.26484 -25.85577 -24.28438 -22.78424 -22.11412 -20.02484 -18.96212 -17.24255 -16.63459 -16.06363 -15.84433 -15.48944 -14.92661 -14.36228 -14.08496 -13.76728 -13.39440 -13.08397 -12.80745 -12.47398 -11.95283 -11.89479 -11.62881 -11.48683 -11.35950 -10.99963 -10.77346 -10.69558 -10.22713 -10.09879 -9.93816 -9.74056 -9.50919 -8.80701 -8.63237 -8.50396 -6.81475 -5.63933 -3.05502 1.28276 1.34308 3.41392 3.45481 3.46858 3.71222 4.31775 4.50545 4.77697 4.85494 5.11426 5.25798 5.32676 5.41500 5.50242 5.56595 5.62356 5.77535 5.98574 6.07785 6.13384 6.18544 6.23935 6.32522 6.39062 6.48529 6.55603 6.60847 6.64418 6.85688 6.92050 7.04113 7.52763 7.63718 7.87054 8.37680 9.23499 9.84361 10.49575 11.39868 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.032953 B = 0.005537 C = 0.005438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.481327 B = 5055.224888 C = 5148.148568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.043 4.043 3 C -0.019 4.019 4 C -0.127 4.127 5 C -0.092 4.092 6 C -0.168 4.168 7 C 0.095 3.905 8 F -0.145 7.145 9 C -0.152 4.152 10 C -0.140 4.140 11 C 0.154 3.846 12 N -0.603 5.603 13 C -0.222 4.222 14 H 0.076 0.924 15 C -0.011 4.011 16 N -0.923 5.923 17 Si 0.914 3.086 18 H -0.286 1.286 19 H -0.290 1.290 20 H -0.285 1.285 21 C 0.153 3.847 22 H 0.050 0.950 23 H 0.067 0.933 24 H 0.052 0.948 25 H 0.128 0.872 26 H 0.128 0.872 27 H 0.129 0.871 28 H 0.141 0.859 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.106 0.894 32 H 0.013 0.987 33 H 0.252 0.748 34 H 0.023 0.977 35 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.947 14.694 -0.353 14.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.043 4.043 3 C -0.020 4.020 4 C -0.145 4.145 5 C -0.110 4.110 6 C -0.187 4.187 7 C 0.076 3.924 8 F -0.123 7.123 9 C -0.171 4.171 10 C -0.178 4.178 11 C 0.029 3.971 12 N -0.329 5.329 13 C -0.351 4.351 14 H 0.094 0.906 15 C -0.206 4.206 16 N -0.572 5.572 17 Si 0.745 3.255 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.212 1.212 21 C 0.027 3.973 22 H 0.069 0.931 23 H 0.086 0.914 24 H 0.071 0.929 25 H 0.146 0.854 26 H 0.146 0.854 27 H 0.147 0.853 28 H 0.159 0.841 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.124 0.876 32 H 0.031 0.969 33 H 0.063 0.937 34 H 0.041 0.959 35 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -2.855 14.470 -0.409 14.754 hybrid contribution 0.513 -0.565 0.385 0.855 sum -2.342 13.905 -0.024 14.101 Atomic orbital electron populations 1.21731 0.93155 1.02522 1.00837 1.20595 0.95501 0.89432 0.98800 1.19760 0.94186 0.95509 0.92544 1.21118 1.01056 0.93493 0.98800 1.20939 0.96699 0.95917 0.97487 1.21039 1.02826 1.00151 0.94707 1.17725 0.94835 0.93653 0.86194 1.91476 1.73748 1.89936 1.57173 1.21278 1.00250 0.94362 1.01200 1.23241 0.99737 0.99325 0.95539 1.21926 0.99580 0.90673 0.84927 1.44466 1.74153 1.06674 1.07580 1.19031 1.33866 0.89293 0.92866 0.90582 1.24776 1.01803 0.97631 0.96422 1.69786 1.54058 1.22388 1.10925 0.86157 0.78935 0.81450 0.78984 1.21223 1.21561 1.21188 1.21302 0.96497 0.86600 0.92905 0.93089 0.91385 0.92920 0.85410 0.85359 0.85326 0.84128 0.92063 0.91664 0.87628 0.96897 0.93695 0.95917 0.95834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 8.26 37.16 0.31 -1.61 16 2 C -0.04 -0.74 0.72 -153.83 -0.11 -0.85 16 3 C -0.02 -0.30 4.63 -104.64 -0.48 -0.78 16 4 C -0.13 -1.68 8.98 -39.58 -0.36 -2.03 16 5 C -0.09 -1.06 10.04 -39.59 -0.40 -1.46 16 6 C -0.17 -2.05 10.03 -39.51 -0.40 -2.45 16 7 C 0.10 1.35 7.30 -39.42 -0.29 1.07 16 8 F -0.14 -2.11 17.27 2.25 0.04 -2.07 16 9 C -0.15 -2.31 8.97 -39.52 -0.35 -2.67 16 10 C -0.14 -2.65 5.04 -24.58 -0.12 -2.77 16 11 C 0.15 3.71 5.58 -2.53 -0.01 3.70 16 12 N -0.60 -15.46 3.39 -170.07 -0.58 -16.03 16 13 C -0.22 -6.22 10.27 -15.06 -0.15 -6.38 16 14 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 15 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 16 N -0.92 -26.92 10.09 55.49 0.56 -26.36 16 17 Si 0.91 22.13 29.55 -169.99 -5.02 17.10 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 C 0.15 3.20 6.14 -3.07 -0.02 3.18 16 22 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.07 1.16 7.52 -51.93 -0.39 0.77 16 24 H 0.05 0.71 7.58 -51.93 -0.39 0.32 16 25 H 0.13 1.53 7.74 -52.49 -0.41 1.13 16 26 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 27 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 28 H 0.14 2.12 5.86 -52.49 -0.31 1.81 16 29 H 0.06 1.03 8.04 -51.93 -0.42 0.61 16 30 H 0.06 1.24 6.34 -51.93 -0.33 0.91 16 31 H 0.11 2.89 5.87 -51.93 -0.30 2.58 16 32 H 0.01 0.33 7.77 -51.93 -0.40 -0.07 16 33 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.02 0.49 7.81 -51.93 -0.41 0.08 16 35 H 0.02 0.49 7.84 -51.93 -0.41 0.08 16 LS Contribution 285.88 15.07 4.31 4.31 Total: -1.00 -29.76 285.88 -7.76 -37.52 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -4.58 Total: -1.00 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -2.49 Total: -13.47 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: -0.02 Total: -42.39 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.76 -7.76 -37.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593044956.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.298 kcal (2) G-P(sol) polarization free energy of solvation -29.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds