Wall clock time and date at job start Mon Mar 30 2020 06:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 110.64122 * 2 1 4 4 C 1.38263 * 119.98974 * 61.68313 * 3 2 1 5 5 C 1.38227 * 120.05156 * 179.97438 * 4 3 2 6 6 C 1.38219 * 120.02402 * 0.30685 * 5 4 3 7 7 C 1.38438 * 119.97316 * 359.46494 * 6 5 4 8 8 F 1.35104 * 120.02417 * 180.25968 * 7 6 5 9 9 C 1.38176 * 119.98501 * 241.71399 * 3 2 1 10 10 C 1.55153 * 110.87326 * 236.74668 * 2 1 3 11 11 C 1.54910 * 101.58516 * 277.06755 * 10 2 1 12 12 N 1.47430 * 104.82992 * 322.99109 * 11 10 2 13 13 C 1.36936 * 125.64657 * 204.09295 * 12 11 10 14 14 H 1.07993 * 119.99850 * 180.02562 * 13 12 11 15 15 C 1.38813 * 119.99895 * 0.03857 * 13 12 11 16 16 N 1.31620 * 120.00154 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99994 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47307 * 59.99586 * 17 15 13 19 19 H 1.48496 * 109.47193 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46694 * 300.00109 * 17 15 13 21 21 C 1.47016 * 108.70182 * 24.12705 * 12 11 10 22 22 H 1.08994 * 109.46936 * 60.70658 * 1 2 3 23 23 H 1.09005 * 109.46746 * 180.70690 * 1 2 3 24 24 H 1.09002 * 109.47070 * 300.69805 * 1 2 3 25 25 H 1.07999 * 119.97831 * 0.02562 * 4 3 2 26 26 H 1.08002 * 119.98464 * 180.02562 * 5 4 3 27 27 H 1.08004 * 120.01020 * 179.72204 * 6 5 4 28 28 H 1.08000 * 120.01241 * 0.02562 * 9 3 2 29 29 H 1.08999 * 111.00119 * 35.14138 * 10 2 1 30 30 H 1.08996 * 111.00476 * 158.99064 * 10 2 1 31 31 H 1.08994 * 110.36960 * 204.15039 * 11 10 2 32 32 H 1.08998 * 110.36615 * 81.82464 * 11 10 2 33 33 H 0.97001 * 120.00116 * 179.97438 * 16 15 13 34 34 H 1.09002 * 109.88153 * 239.52402 * 21 12 11 35 35 H 1.09004 * 110.01267 * 118.43488 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0613 1.4103 0.0000 4 6 1.7733 2.2572 1.0542 5 6 2.2603 3.5509 1.0558 6 6 3.0306 4.0011 0.0002 7 6 3.3235 3.1525 -1.0537 8 9 4.0808 3.5899 -2.0835 9 6 2.8354 1.8566 -1.0539 10 6 2.0828 -0.7949 -1.2123 11 6 2.0192 -2.2502 -0.6852 12 7 2.3757 -2.1506 0.7419 13 6 2.8986 -3.1594 1.5061 14 1 3.1265 -2.9854 2.5473 15 6 3.1358 -4.4055 0.9424 16 7 2.8587 -4.6174 -0.3267 17 14 3.8485 -5.7819 1.9852 18 1 2.9329 -6.0692 3.1185 19 1 4.0059 -7.0021 1.1537 20 1 5.1738 -5.3682 2.5121 21 6 2.0760 -0.7891 1.2087 22 1 -0.3633 0.5028 -0.8962 23 1 -0.3633 -1.0277 0.0127 24 1 -0.3633 0.5246 0.8837 25 1 1.1681 1.9076 1.8775 26 1 2.0351 4.2114 1.8800 27 1 3.4073 5.0133 -0.0005 28 1 3.0595 1.1951 -1.8777 29 1 1.4445 -0.6678 -2.0867 30 1 3.1096 -0.5044 -1.4346 31 1 2.7382 -2.8766 -1.2130 32 1 1.0117 -2.6506 -0.7974 33 1 3.0249 -5.4881 -0.7207 34 1 2.9851 -0.3161 1.5801 35 1 1.3262 -0.8223 1.9991 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593044956.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:03 Heat of formation + Delta-G solvation = -13.925795 kcal Electronic energy + Delta-G solvation = -18148.646677 eV Core-core repulsion = 15253.872495 eV Total energy + Delta-G solvation = -2894.774182 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.86399 -40.96207 -38.66427 -35.29747 -32.76764 -31.74265 -30.80578 -29.70307 -27.58951 -25.96071 -23.91249 -23.42485 -21.81205 -20.30465 -18.93832 -18.06861 -17.16475 -16.97189 -16.75715 -16.57232 -16.06958 -15.71691 -15.00620 -14.64087 -14.52762 -14.08028 -13.93267 -13.72884 -13.17317 -12.97266 -12.86808 -12.82942 -12.73493 -12.57455 -12.13619 -11.99169 -11.76811 -11.62012 -11.44972 -11.19691 -10.71475 -9.86078 -9.56896 -8.87437 -7.76854 -5.21229 0.24377 0.32069 1.46213 1.49561 1.55976 2.49657 2.68140 3.24401 3.32452 3.59197 3.66640 3.85608 4.02304 4.12033 4.18416 4.27579 4.32561 4.50581 4.64128 4.70564 4.82646 4.88402 5.00626 5.08994 5.10827 5.15428 5.17684 5.25136 5.34785 5.45978 5.53085 5.63348 5.65367 5.83691 6.00724 6.31324 7.11195 7.78925 8.43355 9.24881 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.032953 B = 0.005537 C = 0.005438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.481327 B = 5055.224888 C = 5148.148568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.028 4.028 3 C -0.037 4.037 4 C -0.127 4.127 5 C -0.081 4.081 6 C -0.159 4.159 7 C 0.078 3.922 8 F -0.151 7.151 9 C -0.167 4.167 10 C -0.127 4.127 11 C 0.157 3.843 12 N -0.625 5.625 13 C -0.240 4.240 14 H 0.080 0.920 15 C -0.067 4.067 16 N -0.950 5.950 17 Si 0.980 3.020 18 H -0.277 1.277 19 H -0.293 1.293 20 H -0.278 1.278 21 C 0.150 3.850 22 H 0.069 0.931 23 H 0.044 0.956 24 H 0.074 0.926 25 H 0.142 0.858 26 H 0.167 0.833 27 H 0.156 0.844 28 H 0.131 0.869 29 H 0.083 0.917 30 H 0.061 0.939 31 H 0.069 0.931 32 H -0.009 1.009 33 H 0.247 0.753 34 H 0.017 0.983 35 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.306 17.006 0.994 17.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.029 4.029 3 C -0.037 4.037 4 C -0.145 4.145 5 C -0.099 4.099 6 C -0.178 4.178 7 C 0.059 3.941 8 F -0.130 7.130 9 C -0.186 4.186 10 C -0.166 4.166 11 C 0.032 3.968 12 N -0.351 5.351 13 C -0.369 4.369 14 H 0.098 0.902 15 C -0.259 4.259 16 N -0.599 5.599 17 Si 0.808 3.192 18 H -0.203 1.203 19 H -0.219 1.219 20 H -0.204 1.204 21 C 0.025 3.975 22 H 0.088 0.912 23 H 0.063 0.937 24 H 0.093 0.907 25 H 0.160 0.840 26 H 0.185 0.815 27 H 0.174 0.826 28 H 0.149 0.851 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.009 0.991 33 H 0.057 0.943 34 H 0.035 0.965 35 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -3.220 16.814 0.949 17.146 hybrid contribution 0.632 -1.212 -0.012 1.367 sum -2.589 15.602 0.937 15.844 Atomic orbital electron populations 1.21703 0.91550 1.01609 1.02934 1.20424 0.96688 0.90170 0.95580 1.19552 0.95647 0.94563 0.93948 1.21344 1.00932 0.93999 0.98255 1.21344 0.95043 0.95499 0.98003 1.21417 1.01738 1.00975 0.93663 1.17916 0.95412 0.93793 0.86939 1.91459 1.73984 1.89911 1.57628 1.21249 1.01011 0.95060 1.01287 1.23079 1.00372 0.95981 0.97124 1.21680 0.97041 0.93406 0.84627 1.44770 1.74097 1.08096 1.08151 1.19426 1.33737 0.90328 0.93438 0.90220 1.25634 1.02641 1.00008 0.97658 1.70055 1.55104 1.22392 1.12394 0.85125 0.78396 0.78184 0.77464 1.20281 1.21897 1.20409 1.21461 0.96463 0.84829 0.94719 0.91177 0.93733 0.90670 0.83997 0.81540 0.82615 0.85101 0.89876 0.92028 0.91298 0.99065 0.94344 0.96460 0.95179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.51 8.26 71.98 0.59 -2.91 16 2 C -0.03 -0.95 0.72 -51.74 -0.04 -0.98 16 3 C -0.04 -1.06 4.63 -19.87 -0.09 -1.15 16 4 C -0.13 -2.94 8.98 22.27 0.20 -2.74 16 5 C -0.08 -1.50 10.04 22.26 0.22 -1.28 16 6 C -0.16 -3.28 10.03 22.31 0.22 -3.06 16 7 C 0.08 2.08 7.30 22.37 0.16 2.24 16 8 F -0.15 -4.21 17.27 44.97 0.78 -3.43 16 9 C -0.17 -4.90 8.97 22.31 0.20 -4.70 16 10 C -0.13 -4.87 5.04 31.98 0.16 -4.71 16 11 C 0.16 7.91 5.58 86.85 0.48 8.40 16 12 N -0.63 -32.84 3.39 -691.99 -2.35 -35.19 16 13 C -0.24 -13.72 10.27 84.03 0.86 -12.86 16 14 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 15 C -0.07 -3.86 5.49 84.86 0.47 -3.39 16 16 N -0.95 -57.43 10.09 21.65 0.22 -57.21 16 17 Si 0.98 46.15 29.55 68.60 2.03 48.18 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 19 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 21 C 0.15 6.26 6.14 86.73 0.53 6.79 16 22 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 23 H 0.04 1.49 7.52 -2.38 -0.02 1.47 16 24 H 0.07 1.83 7.58 -2.39 -0.02 1.81 16 25 H 0.14 2.85 7.74 -2.91 -0.02 2.83 16 26 H 0.17 1.85 8.06 -2.91 -0.02 1.82 16 27 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 28 H 0.13 3.95 5.86 -2.91 -0.02 3.94 16 29 H 0.08 2.78 8.04 -2.39 -0.02 2.76 16 30 H 0.06 2.39 6.34 -2.39 -0.02 2.37 16 31 H 0.07 3.98 5.87 -2.39 -0.01 3.96 16 32 H -0.01 -0.46 7.77 -2.39 -0.02 -0.48 16 33 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 34 H 0.02 0.74 7.81 -2.39 -0.02 0.72 16 35 H 0.03 1.21 7.84 -2.39 -0.02 1.19 16 Total: -1.00 -66.08 285.88 5.74 -60.35 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: 1.08 Total: 7.66 kcal Atomic # 6 Polarization: -24.33 SS G_CDS: 3.98 Total: -20.35 kcal Atomic # 7 Polarization: -90.27 SS G_CDS: -2.13 Total: -92.40 kcal Atomic # 9 Polarization: -4.21 SS G_CDS: 0.78 Total: -3.43 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -66.08 5.74 -60.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593044956.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.420 kcal (2) G-P(sol) polarization free energy of solvation -66.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds