Wall clock time and date at job start Mon Mar 30 2020 06:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 108.81211 * 2 1 4 4 C 1.52718 * 108.90975 * 118.59936 * 2 1 3 5 5 N 1.47230 * 107.75331 * 35.48274 * 4 2 1 6 6 C 1.36932 * 120.87609 * 238.24985 * 5 4 2 7 7 H 1.08004 * 119.99933 * 333.64945 * 6 5 4 8 8 C 1.38812 * 120.00031 * 153.65304 * 6 5 4 9 9 N 1.31618 * 120.00078 * 348.93091 * 8 6 5 10 10 Si 1.86796 * 120.00138 * 168.93482 * 8 6 5 11 11 H 1.48495 * 109.47677 * 89.99803 * 10 8 6 12 12 H 1.48501 * 109.47197 * 210.00012 * 10 8 6 13 13 H 1.48498 * 109.47245 * 329.99678 * 10 8 6 14 14 C 1.46361 * 118.22103 * 58.16784 * 5 4 2 15 15 C 1.53043 * 106.51958 * 31.98209 * 14 5 4 16 16 C 1.50344 * 111.31765 * 270.99387 * 15 14 5 17 17 C 1.39086 * 117.16198 * 230.86227 * 16 15 14 18 18 C 1.37799 * 120.79044 * 181.82622 * 17 16 15 19 19 C 1.38506 * 119.50557 * 0.22099 * 18 17 16 20 20 F 1.35093 * 120.15108 * 179.10286 * 19 18 17 21 21 C 1.37964 * 119.69675 * 359.07570 * 19 18 17 22 22 C 1.37444 * 122.95257 * 51.17992 * 16 15 14 23 23 H 1.08996 * 109.47313 * 169.40583 * 1 2 3 24 24 H 1.09003 * 109.47058 * 289.40195 * 1 2 3 25 25 H 1.08995 * 109.47252 * 49.39884 * 1 2 3 26 26 H 1.09000 * 109.80194 * 155.04036 * 4 2 1 27 27 H 1.09000 * 109.80421 * 275.91860 * 4 2 1 28 28 H 0.96998 * 120.00274 * 180.02562 * 9 8 6 29 29 H 1.09004 * 110.09667 * 272.70825 * 14 5 4 30 30 H 1.09008 * 110.00867 * 151.20475 * 14 5 4 31 31 H 1.08998 * 109.10017 * 150.54254 * 15 14 5 32 32 H 1.08996 * 109.10242 * 31.44742 * 15 14 5 33 33 H 1.08001 * 119.61060 * 1.78251 * 17 16 15 34 34 H 1.07996 * 120.24933 * 180.19675 * 18 17 16 35 35 H 1.08003 * 119.54717 * 179.88258 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8815 1.0318 0.0000 4 6 2.0249 -0.6916 1.2685 5 7 1.0902 -1.7866 1.5766 6 6 0.4315 -1.8315 2.7763 7 1 0.8624 -1.3597 3.6470 8 6 -0.7901 -2.4836 2.8733 9 7 -1.4197 -2.8674 1.7830 10 14 -1.5407 -2.8163 4.5511 11 1 -2.4015 -1.6719 4.9442 12 1 -2.3594 -4.0537 4.4907 13 1 -0.4577 -2.9878 5.5526 14 6 0.8828 -2.8246 0.5658 15 6 2.2071 -2.9692 -0.1875 16 6 2.2753 -2.0288 -1.3585 17 6 2.6228 -2.5729 -2.5905 18 6 2.7441 -1.7730 -3.7059 19 6 2.5213 -0.4104 -3.5957 20 9 2.6544 0.3885 -4.6770 21 6 2.1625 0.1271 -2.3769 22 6 2.0185 -0.6827 -1.2523 23 1 -0.3634 -1.0101 -0.1889 24 1 -0.3633 0.3414 0.9693 25 1 -0.3633 0.6688 -0.7802 26 1 3.0242 -1.0945 1.1035 27 1 2.0446 0.0204 2.0936 28 1 -2.2734 -3.3227 1.8507 29 1 0.0926 -2.5246 -0.1224 30 1 0.6222 -3.7673 1.0472 31 1 2.3030 -3.9938 -0.5469 32 1 3.0302 -2.7516 0.4931 33 1 2.8003 -3.6350 -2.6738 34 1 3.0112 -2.2052 -4.6589 35 1 1.9912 1.1902 -2.2932 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593117695.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:41 Heat of formation + Delta-G solvation = 5.038382 kcal Electronic energy + Delta-G solvation = -18662.328722 eV Core-core repulsion = 15768.376889 eV Total energy + Delta-G solvation = -2893.951834 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.64419 -39.71507 -36.50046 -33.39796 -32.39325 -30.49248 -29.42275 -27.38648 -25.90807 -23.69789 -23.09805 -22.05755 -19.76981 -19.15745 -17.04737 -16.53625 -16.01372 -15.40176 -15.32299 -14.83859 -14.32828 -14.10749 -13.49369 -13.34194 -13.01643 -12.82417 -12.32426 -11.97116 -11.53589 -11.37813 -11.19389 -10.93606 -10.86026 -10.61000 -10.45036 -10.30848 -10.11728 -9.86810 -9.82890 -9.50934 -8.56606 -8.48907 -8.02596 -6.66965 -5.75880 -3.19336 1.50231 1.54161 3.37506 3.45014 3.45993 3.89137 4.49927 4.52870 4.97983 5.08684 5.26122 5.41117 5.42909 5.50420 5.64597 5.84558 5.94863 6.06557 6.18330 6.22722 6.34752 6.39921 6.41595 6.54759 6.59188 6.66459 6.78867 6.82957 6.99541 7.10614 7.26397 7.37976 7.44089 7.79007 7.87619 8.40343 9.23706 9.84695 10.41850 11.32154 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.042531 B = 0.006300 C = 0.006021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.189636 B = 4443.371922 C = 4649.337581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.074 4.074 3 H 0.062 0.938 4 C 0.148 3.852 5 N -0.594 5.594 6 C -0.250 4.250 7 H 0.065 0.935 8 C 0.006 3.994 9 N -0.906 5.906 10 Si 0.901 3.099 11 H -0.288 1.288 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.189 3.811 15 C -0.114 4.114 16 C -0.066 4.066 17 C -0.097 4.097 18 C -0.164 4.164 19 C 0.080 3.920 20 F -0.150 7.150 21 C -0.159 4.159 22 C -0.024 4.024 23 H 0.087 0.913 24 H 0.062 0.938 25 H 0.021 0.979 26 H 0.028 0.972 27 H 0.059 0.941 28 H 0.253 0.747 29 H 0.044 0.956 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.255 2.235 -7.525 10.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.095 4.095 3 H 0.080 0.920 4 C 0.022 3.978 5 N -0.318 5.318 6 C -0.380 4.380 7 H 0.083 0.917 8 C -0.193 4.193 9 N -0.551 5.551 10 Si 0.731 3.269 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.064 3.936 15 C -0.152 4.152 16 C -0.066 4.066 17 C -0.115 4.115 18 C -0.183 4.183 19 C 0.061 3.939 20 F -0.128 7.128 21 C -0.178 4.178 22 C -0.025 4.025 23 H 0.106 0.894 24 H 0.081 0.919 25 H 0.040 0.960 26 H 0.046 0.954 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 7.091 2.162 -7.557 10.587 hybrid contribution -0.506 0.041 0.424 0.662 sum 6.585 2.203 -7.133 9.955 Atomic orbital electron populations 1.21793 0.92391 1.03632 1.00393 1.20824 0.97941 0.97694 0.93002 0.92017 1.21078 0.92981 0.90332 0.93455 1.44198 1.49443 1.22193 1.15959 1.19133 0.99217 1.33175 0.86468 0.91688 1.25032 0.95858 1.01754 0.96656 1.69962 1.15669 1.43606 1.25836 0.86317 0.79003 0.77444 0.84089 1.21559 1.21730 1.20652 1.20785 0.90125 0.92710 0.89951 1.21340 1.02926 0.96117 0.94806 1.19814 0.97805 0.93574 0.95448 1.21134 0.99105 0.99626 0.91630 1.20933 1.05400 0.91988 0.99999 1.17524 1.04194 0.88636 0.83519 1.91443 1.93891 1.73732 1.53774 1.21298 1.04077 1.00859 0.91556 1.19769 0.95177 0.92448 0.95065 0.89417 0.91932 0.96002 0.95376 0.92251 0.93710 0.93853 0.92005 0.92126 0.90358 0.85549 0.85479 0.85588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 8.22 37.16 0.31 -2.25 16 2 C -0.07 -1.35 2.63 -91.88 -0.24 -1.59 16 3 H 0.06 1.00 7.91 -51.93 -0.41 0.59 16 4 C 0.15 2.92 5.59 -3.79 -0.02 2.90 16 5 N -0.59 -13.79 1.91 -172.90 -0.33 -14.12 16 6 C -0.25 -6.48 9.65 -15.06 -0.15 -6.62 16 7 H 0.07 1.67 7.85 -52.48 -0.41 1.26 16 8 C 0.01 0.15 5.13 -17.43 -0.09 0.06 16 9 N -0.91 -24.90 11.00 55.49 0.61 -24.29 16 10 Si 0.90 21.13 29.57 -169.99 -5.03 16.10 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 14 C 0.19 4.24 4.01 -4.10 -0.02 4.22 16 15 C -0.11 -2.06 5.17 -28.03 -0.15 -2.20 16 16 C -0.07 -1.13 5.25 -104.77 -0.55 -1.68 16 17 C -0.10 -1.44 9.54 -39.43 -0.38 -1.81 16 18 C -0.16 -2.36 10.04 -39.64 -0.40 -2.76 16 19 C 0.08 1.25 7.29 -39.58 -0.29 0.96 16 20 F -0.15 -2.30 17.27 2.25 0.04 -2.27 16 21 C -0.16 -2.56 9.46 -39.28 -0.37 -2.93 16 22 C -0.02 -0.42 4.78 -104.47 -0.50 -0.92 16 23 H 0.09 2.06 4.87 -51.93 -0.25 1.81 16 24 H 0.06 1.39 8.08 -51.93 -0.42 0.97 16 25 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.03 0.53 6.12 -51.93 -0.32 0.21 16 27 H 0.06 1.15 7.95 -51.93 -0.41 0.74 16 28 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.04 1.08 5.16 -51.93 -0.27 0.81 16 30 H 0.06 1.54 7.20 -51.92 -0.37 1.17 16 31 H 0.06 0.97 7.67 -51.93 -0.40 0.58 16 32 H 0.08 1.43 6.24 -51.93 -0.32 1.10 16 33 H 0.13 1.58 7.78 -52.49 -0.41 1.17 16 34 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 35 H 0.13 1.84 7.94 -52.48 -0.42 1.43 16 LS Contribution 277.11 15.07 4.18 4.18 Total: -1.00 -26.92 277.11 -7.76 -34.68 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -4.39 Total: 0.34 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -2.84 Total: -14.63 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.28 Total: -38.40 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -26.92 -7.76 -34.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593117695.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.721 kcal (2) G-P(sol) polarization free energy of solvation -26.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds