Wall clock time and date at job start Mon Mar 30 2020 06:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 108.81211 * 2 1 4 4 C 1.52718 * 108.90975 * 118.59936 * 2 1 3 5 5 N 1.47230 * 107.75331 * 35.48274 * 4 2 1 6 6 C 1.36932 * 120.87609 * 238.24985 * 5 4 2 7 7 H 1.08004 * 119.99933 * 333.64945 * 6 5 4 8 8 C 1.38812 * 120.00031 * 153.65304 * 6 5 4 9 9 N 1.31618 * 120.00078 * 348.93091 * 8 6 5 10 10 Si 1.86796 * 120.00138 * 168.93482 * 8 6 5 11 11 H 1.48495 * 109.47677 * 89.99803 * 10 8 6 12 12 H 1.48501 * 109.47197 * 210.00012 * 10 8 6 13 13 H 1.48498 * 109.47245 * 329.99678 * 10 8 6 14 14 C 1.46361 * 118.22103 * 58.16784 * 5 4 2 15 15 C 1.53043 * 106.51958 * 31.98209 * 14 5 4 16 16 C 1.50344 * 111.31765 * 270.99387 * 15 14 5 17 17 C 1.39086 * 117.16198 * 230.86227 * 16 15 14 18 18 C 1.37799 * 120.79044 * 181.82622 * 17 16 15 19 19 C 1.38506 * 119.50557 * 0.22099 * 18 17 16 20 20 F 1.35093 * 120.15108 * 179.10286 * 19 18 17 21 21 C 1.37964 * 119.69675 * 359.07570 * 19 18 17 22 22 C 1.37444 * 122.95257 * 51.17992 * 16 15 14 23 23 H 1.08996 * 109.47313 * 169.40583 * 1 2 3 24 24 H 1.09003 * 109.47058 * 289.40195 * 1 2 3 25 25 H 1.08995 * 109.47252 * 49.39884 * 1 2 3 26 26 H 1.09000 * 109.80194 * 155.04036 * 4 2 1 27 27 H 1.09000 * 109.80421 * 275.91860 * 4 2 1 28 28 H 0.96998 * 120.00274 * 180.02562 * 9 8 6 29 29 H 1.09004 * 110.09667 * 272.70825 * 14 5 4 30 30 H 1.09008 * 110.00867 * 151.20475 * 14 5 4 31 31 H 1.08998 * 109.10017 * 150.54254 * 15 14 5 32 32 H 1.08996 * 109.10242 * 31.44742 * 15 14 5 33 33 H 1.08001 * 119.61060 * 1.78251 * 17 16 15 34 34 H 1.07996 * 120.24933 * 180.19675 * 18 17 16 35 35 H 1.08003 * 119.54717 * 179.88258 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8815 1.0318 0.0000 4 6 2.0249 -0.6916 1.2685 5 7 1.0902 -1.7866 1.5766 6 6 0.4315 -1.8315 2.7763 7 1 0.8624 -1.3597 3.6470 8 6 -0.7901 -2.4836 2.8733 9 7 -1.4197 -2.8674 1.7830 10 14 -1.5407 -2.8163 4.5511 11 1 -2.4015 -1.6719 4.9442 12 1 -2.3594 -4.0537 4.4907 13 1 -0.4577 -2.9878 5.5526 14 6 0.8828 -2.8246 0.5658 15 6 2.2071 -2.9692 -0.1875 16 6 2.2753 -2.0288 -1.3585 17 6 2.6228 -2.5729 -2.5905 18 6 2.7441 -1.7730 -3.7059 19 6 2.5213 -0.4104 -3.5957 20 9 2.6544 0.3885 -4.6770 21 6 2.1625 0.1271 -2.3769 22 6 2.0185 -0.6827 -1.2523 23 1 -0.3634 -1.0101 -0.1889 24 1 -0.3633 0.3414 0.9693 25 1 -0.3633 0.6688 -0.7802 26 1 3.0242 -1.0945 1.1035 27 1 2.0446 0.0204 2.0936 28 1 -2.2734 -3.3227 1.8507 29 1 0.0926 -2.5246 -0.1224 30 1 0.6222 -3.7673 1.0472 31 1 2.3030 -3.9938 -0.5469 32 1 3.0302 -2.7516 0.4931 33 1 2.8003 -3.6350 -2.6738 34 1 3.0112 -2.2052 -4.6589 35 1 1.9912 1.1902 -2.2932 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593117695.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:41 Heat of formation + Delta-G solvation = -7.192551 kcal Electronic energy + Delta-G solvation = -18662.859095 eV Core-core repulsion = 15768.376889 eV Total energy + Delta-G solvation = -2894.482207 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.83488 -41.08281 -38.03738 -34.99032 -34.00324 -32.15094 -30.79721 -28.96977 -27.63917 -25.36264 -24.58354 -23.36165 -21.32745 -20.63612 -18.80718 -17.90877 -17.33505 -16.73668 -16.69482 -16.49148 -15.92186 -15.69611 -15.08614 -14.83300 -14.35865 -14.19360 -13.80597 -13.46022 -13.18030 -13.01417 -12.78956 -12.68172 -12.52321 -12.16974 -12.12401 -11.98979 -11.68741 -11.58582 -11.43873 -11.21957 -10.47921 -9.77040 -9.32138 -8.58315 -7.76401 -5.20960 0.26831 0.33778 1.48971 1.51212 1.58761 2.55698 2.66398 3.31644 3.40556 3.69526 3.78474 3.88327 4.05412 4.22673 4.32516 4.44406 4.50424 4.56587 4.77979 4.83845 4.89808 4.97566 4.99697 5.10242 5.15292 5.23055 5.28778 5.35547 5.46419 5.54760 5.66359 5.75854 5.83899 6.02129 6.08671 6.42794 7.25754 7.95306 8.47119 9.28778 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.042531 B = 0.006300 C = 0.006021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.189636 B = 4443.371922 C = 4649.337581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.066 4.066 3 H 0.086 0.914 4 C 0.146 3.854 5 N -0.605 5.605 6 C -0.255 4.255 7 H 0.065 0.935 8 C -0.044 4.044 9 N -0.930 5.930 10 Si 0.958 3.042 11 H -0.290 1.290 12 H -0.297 1.297 13 H -0.274 1.274 14 C 0.200 3.800 15 C -0.101 4.101 16 C -0.083 4.083 17 C -0.092 4.092 18 C -0.155 4.155 19 C 0.075 3.925 20 F -0.148 7.148 21 C -0.162 4.162 22 C -0.041 4.041 23 H 0.055 0.945 24 H 0.035 0.965 25 H 0.038 0.962 26 H 0.044 0.956 27 H 0.058 0.942 28 H 0.245 0.755 29 H 0.018 0.982 30 H 0.026 0.974 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.154 0.846 34 H 0.157 0.843 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.762 2.473 -8.715 12.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.086 4.086 3 H 0.104 0.896 4 C 0.021 3.979 5 N -0.330 5.330 6 C -0.385 4.385 7 H 0.082 0.918 8 C -0.239 4.239 9 N -0.576 5.576 10 Si 0.788 3.212 11 H -0.217 1.217 12 H -0.224 1.224 13 H -0.199 1.199 14 C 0.075 3.925 15 C -0.139 4.139 16 C -0.083 4.083 17 C -0.110 4.110 18 C -0.174 4.174 19 C 0.056 3.944 20 F -0.127 7.127 21 C -0.181 4.181 22 C -0.041 4.041 23 H 0.074 0.926 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.055 0.945 29 H 0.036 0.964 30 H 0.045 0.955 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.171 0.829 34 H 0.175 0.825 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 8.629 2.419 -8.748 12.524 hybrid contribution -0.935 0.003 0.737 1.191 sum 7.693 2.422 -8.012 11.368 Atomic orbital electron populations 1.21598 0.94347 1.01769 0.99263 1.20656 0.96053 0.99049 0.92852 0.89597 1.21189 0.92813 0.89573 0.94374 1.44373 1.49481 1.23669 1.15438 1.19410 0.99218 1.32248 0.87636 0.91765 1.25648 0.96545 1.02441 0.99298 1.70131 1.15629 1.44613 1.27267 0.85415 0.78138 0.76660 0.81016 1.21707 1.22372 1.19868 1.20476 0.91957 0.90719 0.89337 1.21109 0.99896 0.97899 0.94950 1.19818 0.99193 0.93363 0.95969 1.21373 0.97920 1.01066 0.90604 1.21264 1.03706 0.91358 1.01058 1.17681 1.04094 0.89293 0.83358 1.91451 1.93856 1.73820 1.53598 1.21369 1.03887 1.01413 0.91403 1.19671 0.96570 0.92874 0.94977 0.92635 0.94633 0.94325 0.93863 0.92298 0.94536 0.96435 0.95529 0.90019 0.90461 0.82885 0.82500 0.84413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.63 8.22 71.98 0.59 -4.04 16 2 C -0.07 -2.33 2.63 -11.61 -0.03 -2.36 16 3 H 0.09 2.61 7.91 -2.39 -0.02 2.59 16 4 C 0.15 5.66 5.59 86.15 0.48 6.14 16 5 N -0.61 -28.49 1.91 -700.93 -1.34 -29.83 16 6 C -0.25 -13.41 9.65 84.03 0.81 -12.60 16 7 H 0.06 3.33 7.85 -2.91 -0.02 3.30 16 8 C -0.04 -2.36 5.13 84.86 0.44 -1.93 16 9 N -0.93 -52.92 11.00 21.65 0.24 -52.68 16 10 Si 0.96 44.29 29.57 68.60 2.03 46.31 16 11 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 12 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 13 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 14 C 0.20 9.16 4.01 86.42 0.35 9.51 16 15 C -0.10 -3.53 5.17 29.75 0.15 -3.38 16 16 C -0.08 -2.69 5.25 -19.96 -0.10 -2.79 16 17 C -0.09 -2.42 9.54 22.37 0.21 -2.20 16 18 C -0.16 -3.86 10.04 22.23 0.22 -3.63 16 19 C 0.07 2.10 7.29 22.27 0.16 2.26 16 20 F -0.15 -4.13 17.27 44.97 0.78 -3.35 16 21 C -0.16 -4.80 9.46 22.47 0.21 -4.59 16 22 C -0.04 -1.34 4.78 -19.77 -0.09 -1.44 16 23 H 0.05 2.67 4.87 -2.39 -0.01 2.66 16 24 H 0.03 1.60 8.08 -2.39 -0.02 1.58 16 25 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.04 1.56 6.12 -2.39 -0.01 1.55 16 27 H 0.06 2.25 7.95 -2.39 -0.02 2.23 16 28 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 29 H 0.02 0.92 5.16 -2.38 -0.01 0.90 16 30 H 0.03 1.37 7.20 -2.38 -0.02 1.35 16 31 H 0.08 2.48 7.67 -2.39 -0.02 2.46 16 32 H 0.08 2.71 6.24 -2.39 -0.01 2.69 16 33 H 0.15 3.17 7.78 -2.91 -0.02 3.15 16 34 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 35 H 0.14 3.66 7.94 -2.91 -0.02 3.64 16 Total: -1.00 -58.66 277.11 6.20 -52.46 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: 1.09 Total: 8.13 kcal Atomic # 6 Polarization: -24.45 SS G_CDS: 3.40 Total: -21.05 kcal Atomic # 7 Polarization: -81.40 SS G_CDS: -1.10 Total: -82.51 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.78 Total: -3.35 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -58.66 6.20 -52.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593117695.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.268 kcal (2) G-P(sol) polarization free energy of solvation -58.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds