Wall clock time and date at job start Mon Mar 30 2020 06:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 108.86872 * 2 1 4 4 C 1.52729 * 108.89256 * 241.40183 * 2 1 3 5 5 N 1.47205 * 107.51222 * 324.65649 * 4 2 1 6 6 C 1.36932 * 120.85109 * 121.79929 * 5 4 2 7 7 H 1.08001 * 119.99827 * 22.59373 * 6 5 4 8 8 C 1.38814 * 120.00329 * 202.59190 * 6 5 4 9 9 N 1.31615 * 119.99968 * 10.71974 * 8 6 5 10 10 Si 1.86800 * 119.99985 * 190.72842 * 8 6 5 11 11 H 1.48498 * 109.47636 * 89.99934 * 10 8 6 12 12 H 1.48502 * 109.46725 * 210.00090 * 10 8 6 13 13 H 1.48505 * 109.46986 * 329.99434 * 10 8 6 14 14 C 1.46292 * 118.30043 * 301.77430 * 5 4 2 15 15 C 1.53057 * 106.36626 * 328.09524 * 14 5 4 16 16 C 1.50344 * 111.52089 * 89.04929 * 15 14 5 17 17 C 1.39025 * 117.32222 * 129.56068 * 16 15 14 18 18 C 1.37812 * 120.79457 * 177.81539 * 17 16 15 19 19 C 1.38500 * 119.49857 * 359.72653 * 18 17 16 20 20 F 1.35101 * 120.13628 * 181.13506 * 19 18 17 21 21 C 1.37959 * 119.72119 * 1.11339 * 19 18 17 22 22 C 1.37622 * 122.78892 * 309.17507 * 16 15 14 23 23 H 1.09000 * 109.47005 * 185.40863 * 1 2 3 24 24 H 1.09007 * 109.46995 * 305.39882 * 1 2 3 25 25 H 1.08995 * 109.47667 * 65.39944 * 1 2 3 26 26 H 1.08990 * 109.84834 * 205.15066 * 4 2 1 27 27 H 1.09002 * 109.90116 * 84.18719 * 4 2 1 28 28 H 0.96998 * 119.99868 * 179.97438 * 9 8 6 29 29 H 1.09007 * 110.06874 * 208.88158 * 14 5 4 30 30 H 1.08995 * 110.15940 * 87.36163 * 14 5 4 31 31 H 1.09002 * 109.07373 * 328.52702 * 15 14 5 32 32 H 1.09003 * 109.07645 * 209.57520 * 15 14 5 33 33 H 1.08005 * 119.60236 * 357.82911 * 17 16 15 34 34 H 1.08001 * 120.24798 * 179.71074 * 18 17 16 35 35 H 1.07996 * 119.54399 * 180.13591 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8825 1.0314 0.0000 4 6 2.0245 -0.6917 -1.2687 5 7 1.0846 -1.7828 -1.5735 6 6 0.4245 -1.8266 -2.7724 7 1 0.8267 -1.3070 -3.6296 8 6 -0.7616 -2.5387 -2.8862 9 7 -1.3624 -2.9933 -1.8070 10 14 -1.5049 -2.8522 -4.5710 11 1 -0.9761 -4.1284 -5.1158 12 1 -2.9826 -2.9394 -4.4516 13 1 -1.1472 -1.7377 -5.4850 14 6 0.8740 -2.8194 -0.5630 15 6 2.2002 -2.9663 0.1869 16 6 2.2780 -2.0277 1.3588 17 6 2.6380 -2.5694 2.5875 18 6 2.7748 -1.7670 3.6995 19 6 2.5561 -0.4040 3.5880 20 9 2.7089 0.3978 4.6646 21 6 2.1819 0.1316 2.3730 22 6 2.0179 -0.6804 1.2531 23 1 -0.3633 -1.0231 0.0969 24 1 -0.3633 0.5953 0.8377 25 1 -0.3634 0.4278 -0.9343 26 1 3.0223 -1.0980 -1.1038 27 1 2.0465 0.0195 -2.0945 28 1 -2.1914 -3.4906 -1.8864 29 1 0.6095 -3.7616 -1.0431 30 1 0.0858 -2.5173 0.1266 31 1 3.0216 -2.7514 -0.4966 32 1 2.2954 -3.9915 0.5449 33 1 2.8127 -3.6319 2.6715 34 1 3.0503 -2.1979 4.6508 35 1 2.0142 1.1951 2.2887 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593117696.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:44 Heat of formation + Delta-G solvation = -4.755318 kcal Electronic energy + Delta-G solvation = -18658.660237 eV Core-core repulsion = 15764.283717 eV Total energy + Delta-G solvation = -2894.376520 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.83377 -41.08914 -38.06685 -35.00523 -33.98272 -32.14858 -30.79023 -28.98677 -27.64832 -25.37391 -24.58075 -23.35370 -21.32471 -20.64135 -18.82399 -17.91021 -17.33896 -16.75841 -16.69391 -16.49896 -15.90405 -15.68958 -15.09085 -14.84203 -14.36161 -14.20349 -13.80448 -13.45419 -13.17786 -13.00698 -12.77927 -12.70916 -12.50807 -12.17837 -12.10291 -11.97031 -11.68971 -11.58466 -11.41950 -11.23324 -10.46370 -9.77372 -9.32077 -8.63493 -7.76091 -5.17529 0.26625 0.33584 1.49729 1.51398 1.58515 2.55870 2.66342 3.31315 3.41021 3.69380 3.78246 3.88364 4.05423 4.22298 4.32487 4.44308 4.49805 4.55833 4.78199 4.84317 4.90036 4.96520 4.99409 5.09881 5.15026 5.22916 5.28512 5.34830 5.46855 5.57308 5.66183 5.75086 5.84438 6.02254 6.09587 6.41356 7.25742 7.96036 8.45493 9.29626 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.042915 B = 0.006283 C = 0.005990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.295232 B = 4455.430906 C = 4673.620710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.066 4.066 3 H 0.086 0.914 4 C 0.146 3.854 5 N -0.607 5.607 6 C -0.250 4.250 7 H 0.068 0.932 8 C -0.048 4.048 9 N -0.934 5.934 10 Si 0.960 3.040 11 H -0.290 1.290 12 H -0.300 1.300 13 H -0.273 1.273 14 C 0.201 3.799 15 C -0.102 4.102 16 C -0.083 4.083 17 C -0.092 4.092 18 C -0.155 4.155 19 C 0.075 3.925 20 F -0.148 7.148 21 C -0.162 4.162 22 C -0.041 4.041 23 H 0.059 0.941 24 H 0.038 0.962 25 H 0.035 0.965 26 H 0.044 0.956 27 H 0.060 0.940 28 H 0.245 0.755 29 H 0.032 0.968 30 H 0.016 0.984 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.153 0.847 34 H 0.157 0.843 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.722 2.839 8.702 12.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.086 4.086 3 H 0.104 0.896 4 C 0.021 3.979 5 N -0.331 5.331 6 C -0.381 4.381 7 H 0.085 0.915 8 C -0.243 4.243 9 N -0.582 5.582 10 Si 0.790 3.210 11 H -0.217 1.217 12 H -0.227 1.227 13 H -0.198 1.198 14 C 0.077 3.923 15 C -0.140 4.140 16 C -0.083 4.083 17 C -0.110 4.110 18 C -0.174 4.174 19 C 0.056 3.944 20 F -0.127 7.127 21 C -0.181 4.181 22 C -0.041 4.041 23 H 0.078 0.922 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.034 0.966 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.171 0.829 34 H 0.175 0.825 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 8.590 2.797 8.729 12.562 hybrid contribution -0.899 -0.026 -0.735 1.161 sum 7.691 2.771 7.994 11.435 Atomic orbital electron populations 1.21675 0.94445 1.02454 0.98968 1.20640 0.96070 0.99065 0.92793 0.89574 1.21178 0.92736 0.89564 0.94432 1.44406 1.49027 1.24233 1.15477 1.19484 1.01491 1.28830 0.88278 0.91465 1.25581 0.96870 1.02407 0.99454 1.70145 1.18375 1.42107 1.27527 0.85372 0.76827 0.77943 0.80890 1.21702 1.22695 1.19779 1.20486 0.91625 0.91065 0.89159 1.21130 1.00003 0.97874 0.94970 1.19857 0.99100 0.93411 0.95967 1.21351 0.97923 1.01058 0.90659 1.21264 1.03707 0.91341 1.01053 1.17675 1.03994 0.89222 0.83532 1.91454 1.93660 1.73652 1.53957 1.21352 1.03806 1.01394 0.91509 1.19701 0.96570 0.92847 0.95005 0.92193 0.94310 0.94579 0.93838 0.92182 0.94568 0.94923 0.96647 0.90495 0.90158 0.82934 0.82500 0.84383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.82 8.29 71.98 0.60 -4.22 16 2 C -0.07 -2.30 2.64 -11.63 -0.03 -2.33 16 3 H 0.09 2.60 7.89 -2.39 -0.02 2.58 16 4 C 0.15 5.64 5.64 86.15 0.49 6.13 16 5 N -0.61 -28.52 1.87 -701.15 -1.31 -29.83 16 6 C -0.25 -13.16 9.69 84.03 0.81 -12.34 16 7 H 0.07 3.46 7.85 -2.91 -0.02 3.44 16 8 C -0.05 -2.60 5.15 84.86 0.44 -2.17 16 9 N -0.93 -53.25 10.74 21.65 0.23 -53.01 16 10 Si 0.96 44.38 29.57 68.60 2.03 46.41 16 11 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 12 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 13 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 14 C 0.20 9.26 3.98 86.44 0.34 9.60 16 15 C -0.10 -3.60 5.16 29.76 0.15 -3.44 16 16 C -0.08 -2.69 5.26 -19.93 -0.10 -2.79 16 17 C -0.09 -2.43 9.54 22.36 0.21 -2.22 16 18 C -0.16 -3.85 10.04 22.23 0.22 -3.63 16 19 C 0.07 2.09 7.29 22.27 0.16 2.26 16 20 F -0.15 -4.11 17.27 44.97 0.78 -3.34 16 21 C -0.16 -4.78 9.46 22.46 0.21 -4.56 16 22 C -0.04 -1.35 4.80 -19.75 -0.09 -1.45 16 23 H 0.06 2.90 4.63 -2.39 -0.01 2.89 16 24 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 25 H 0.04 1.57 8.13 -2.39 -0.02 1.56 16 26 H 0.04 1.57 6.11 -2.39 -0.01 1.55 16 27 H 0.06 2.27 7.95 -2.39 -0.02 2.25 16 28 H 0.24 13.79 8.31 -92.71 -0.77 13.02 16 29 H 0.03 1.70 6.92 -2.38 -0.02 1.69 16 30 H 0.02 0.81 5.27 -2.39 -0.01 0.80 16 31 H 0.08 2.71 6.23 -2.39 -0.01 2.70 16 32 H 0.08 2.47 7.68 -2.39 -0.02 2.45 16 33 H 0.15 3.19 7.79 -2.91 -0.02 3.17 16 34 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 35 H 0.14 3.64 7.93 -2.91 -0.02 3.62 16 Total: -1.00 -58.58 276.62 6.23 -52.35 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 1.09 Total: 8.58 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: 3.41 Total: -21.16 kcal Atomic # 7 Polarization: -81.77 SS G_CDS: -1.08 Total: -82.85 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.78 Total: -3.34 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -58.58 6.23 -52.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593117696.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.595 kcal (2) G-P(sol) polarization free energy of solvation -58.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds