Wall clock time and date at job start Mon Mar 30 2020 07:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 119.99886 * 2 1 4 4 H 1.48497 * 109.47072 * 270.00282 * 3 2 1 5 5 H 1.48497 * 109.47148 * 29.99888 * 3 2 1 6 6 H 1.48495 * 109.47484 * 150.00035 * 3 2 1 7 7 C 1.37880 * 120.00552 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99779 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00197 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47018 * 180.02562 * 9 7 2 11 11 N 1.46901 * 109.47158 * 180.02562 * 10 9 7 12 12 C 1.46847 * 111.00144 * 170.00079 * 11 10 9 13 13 C 1.53044 * 109.51335 * 185.83239 * 12 11 10 14 14 C 1.53117 * 109.27792 * 300.82256 * 13 12 11 15 15 C 1.50693 * 109.52032 * 177.55923 * 14 13 12 16 16 C 1.34520 * 125.78707 * 119.72012 * 15 14 13 17 17 C 1.41382 * 106.84038 * 179.89003 * 16 15 14 18 18 C 1.34514 * 106.84157 * 0.36849 * 17 16 15 19 19 O 1.34304 * 125.79300 * 300.02239 * 15 14 13 20 20 C 1.53127 * 109.15989 * 57.65607 * 14 13 12 21 21 C 1.46830 * 110.98168 * 294.21498 * 11 10 9 22 22 H 0.96998 * 120.00529 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47123 * 60.00571 * 9 7 2 24 24 H 1.08998 * 109.47691 * 300.00464 * 9 7 2 25 25 H 1.09001 * 109.47466 * 60.00381 * 10 9 7 26 26 H 1.09002 * 109.47083 * 299.99796 * 10 9 7 27 27 H 1.09002 * 109.46448 * 65.81961 * 12 11 10 28 28 H 1.08994 * 109.45958 * 305.84326 * 12 11 10 29 29 H 1.09001 * 109.49858 * 60.76701 * 13 12 11 30 30 H 1.09002 * 109.49779 * 180.84687 * 13 12 11 31 31 H 1.09004 * 109.52347 * 297.75632 * 14 13 12 32 32 H 1.07997 * 126.57881 * 0.02562 * 16 15 14 33 33 H 1.08003 * 126.58170 * 180.16573 * 17 16 15 34 34 H 1.07997 * 125.78844 * 179.75308 * 18 17 16 35 35 H 1.08997 * 109.50037 * 62.28538 * 20 14 13 36 36 H 1.08996 * 109.50157 * 182.36309 * 20 14 13 37 37 H 1.08995 * 109.46742 * 54.13906 * 21 11 10 38 38 H 1.09004 * 109.45381 * 294.16241 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0216 -2.6364 0.0001 11 7 5.4906 -2.6363 0.0001 12 6 6.0170 -3.9864 0.2383 13 6 7.5399 -3.9244 0.3763 14 6 8.1403 -3.3409 -0.9058 15 6 9.6347 -3.2216 -0.7530 16 6 10.5552 -3.8306 -1.5220 17 6 11.8222 -3.4402 -1.0310 18 6 11.6003 -2.6226 0.0138 19 8 10.2735 -2.4937 0.1776 20 6 7.5393 -1.9550 -1.1567 21 6 6.0164 -2.0741 -1.2502 22 1 -0.4851 0.8400 0.0004 23 1 3.8752 -0.6795 0.8895 24 1 3.8746 -0.6806 -0.8904 25 1 3.6580 -3.1505 -0.8897 26 1 3.6587 -3.1500 0.8903 27 1 5.7542 -4.6318 -0.5999 28 1 5.5853 -4.3879 1.1550 29 1 7.8030 -3.2902 1.2228 30 1 7.9318 -4.9286 0.5380 31 1 7.9101 -3.9954 -1.7465 32 1 10.3631 -4.4893 -2.3560 33 1 12.7839 -3.7433 -1.4182 34 1 12.3602 -2.1502 0.6186 35 1 7.8025 -1.2899 -0.3343 36 1 7.9314 -1.5520 -2.0904 37 1 5.5844 -1.0870 -1.4146 38 1 5.7536 -2.7286 -2.0813 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595616278.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:02 Heat of formation + Delta-G solvation = -15.672554 kcal Electronic energy + Delta-G solvation = -17999.920151 eV Core-core repulsion = 15228.530529 eV Total energy + Delta-G solvation = -2771.389622 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.46847 -40.02397 -36.21233 -34.69390 -33.79967 -32.17463 -31.69069 -29.68703 -26.73046 -24.60051 -24.07028 -22.71042 -21.95468 -21.35202 -20.47577 -19.04367 -18.26701 -16.89452 -16.70076 -16.35179 -16.03877 -15.54850 -15.39882 -14.88860 -14.72314 -14.49780 -14.32375 -13.69668 -13.66619 -13.44802 -13.19408 -13.08412 -12.86054 -12.25197 -12.14950 -11.99683 -11.83602 -11.63498 -11.53583 -11.30642 -11.19063 -10.78940 -10.74217 -9.30936 -9.18444 -8.30173 -6.34070 0.86641 1.35303 1.38099 1.51253 1.75832 2.18485 2.36333 3.01812 3.05486 3.60309 3.79658 3.85924 4.16831 4.20686 4.24157 4.36359 4.37756 4.45671 4.54586 4.56717 4.72250 4.75287 4.89601 4.91502 4.98614 5.00026 5.04745 5.10539 5.16305 5.27068 5.30820 5.40265 5.49393 5.63687 5.67819 6.14918 6.26980 6.30332 6.33912 6.73778 7.30757 8.86544 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.041130 B = 0.004323 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.612092 B = 6474.939352 C = 6871.319660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.007 3.993 3 Si 0.950 3.050 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.250 1.250 7 C -0.533 4.533 8 H 0.033 0.967 9 C 0.000 4.000 10 C 0.083 3.917 11 N -0.552 5.552 12 C 0.055 3.945 13 C -0.101 4.101 14 C -0.004 4.004 15 C -0.013 4.013 16 C -0.222 4.222 17 C -0.226 4.226 18 C -0.052 4.052 19 O -0.193 6.193 20 C -0.102 4.102 21 C 0.052 3.948 22 H 0.267 0.733 23 H 0.019 0.981 24 H 0.018 0.982 25 H 0.021 0.979 26 H 0.062 0.938 27 H 0.040 0.960 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.160 0.840 33 H 0.168 0.832 34 H 0.231 0.769 35 H 0.060 0.940 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.115 -7.300 -2.598 26.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.190 4.190 3 Si 0.773 3.227 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.174 1.174 7 C -0.571 4.571 8 H 0.052 0.948 9 C -0.038 4.038 10 C -0.044 4.044 11 N -0.277 5.277 12 C -0.073 4.073 13 C -0.138 4.138 14 C -0.022 4.022 15 C -0.063 4.063 16 C -0.241 4.241 17 C -0.245 4.245 18 C -0.118 4.118 19 O -0.090 6.090 20 C -0.139 4.139 21 C -0.076 4.076 22 H 0.076 0.924 23 H 0.037 0.963 24 H 0.036 0.964 25 H 0.039 0.961 26 H 0.080 0.920 27 H 0.058 0.942 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.104 0.896 31 H 0.128 0.872 32 H 0.177 0.823 33 H 0.185 0.815 34 H 0.247 0.753 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 24.981 -6.739 -1.993 25.951 hybrid contribution -0.535 0.137 -0.719 0.907 sum 24.447 -6.602 -2.712 25.467 Atomic orbital electron populations 1.70054 1.08230 1.28203 1.52620 1.25957 0.95577 1.03404 0.94048 0.85662 0.79434 0.78339 0.79266 1.18978 1.20842 1.17416 1.21427 0.91934 0.93228 1.50510 0.94829 1.19449 0.93327 0.94491 0.96554 1.21796 0.85698 0.97559 0.99362 1.61949 1.07525 1.22750 1.35497 1.22126 0.95290 0.88669 1.01185 1.21582 0.93622 1.01688 0.96946 1.19878 0.84387 0.98067 0.99858 1.22538 0.95174 0.96978 0.91608 1.21907 0.92323 1.05898 1.04003 1.22159 0.99671 1.03030 0.99596 1.24749 0.82162 1.03264 1.01666 1.84029 1.20034 1.57062 1.47848 1.21584 0.93468 0.96391 1.02507 1.22131 0.95238 1.00130 0.90104 0.92426 0.96304 0.96361 0.96106 0.91961 0.94204 0.90456 0.91996 0.89584 0.87180 0.82279 0.81495 0.75258 0.92082 0.90088 0.91447 0.94309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.38 13.96 21.45 0.30 -60.08 16 2 C 0.01 0.42 5.47 84.66 0.46 0.88 16 3 Si 0.95 45.36 27.47 68.60 1.88 47.25 16 4 H -0.26 -12.04 7.11 99.48 0.71 -11.34 16 5 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 6 H -0.25 -11.39 6.54 99.48 0.65 -10.74 16 7 C -0.53 -31.35 9.66 25.60 0.25 -31.10 16 8 H 0.03 2.15 7.99 -2.91 -0.02 2.13 16 9 C 0.00 -0.02 3.97 29.85 0.12 0.10 16 10 C 0.08 3.39 4.90 86.30 0.42 3.81 16 11 N -0.55 -18.50 4.66 -896.39 -4.17 -22.67 16 12 C 0.05 1.45 5.46 86.33 0.47 1.92 16 13 C -0.10 -2.27 5.36 30.65 0.16 -2.10 16 14 C 0.00 -0.08 2.66 -11.46 -0.03 -0.11 16 15 C -0.01 -0.29 5.84 24.83 0.14 -0.14 16 16 C -0.22 -4.27 10.78 22.19 0.24 -4.03 16 17 C -0.23 -3.80 10.91 22.19 0.24 -3.56 16 18 C -0.05 -0.88 12.09 66.97 0.81 -0.07 16 19 O -0.19 -4.52 10.65 -2.54 -0.03 -4.55 16 20 C -0.10 -2.53 5.36 30.65 0.16 -2.36 16 21 C 0.05 1.56 5.29 86.33 0.46 2.01 16 22 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 23 H 0.02 0.93 7.20 -2.39 -0.02 0.91 16 24 H 0.02 0.86 5.86 -2.39 -0.01 0.84 16 25 H 0.02 0.85 8.12 -2.39 -0.02 0.83 16 26 H 0.06 2.56 7.99 -2.39 -0.02 2.54 16 27 H 0.04 0.98 8.14 -2.39 -0.02 0.97 16 28 H 0.08 2.02 8.01 -2.39 -0.02 2.00 16 29 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.09 1.61 8.14 -2.39 -0.02 1.60 16 31 H 0.11 2.03 8.10 -2.38 -0.02 2.01 16 32 H 0.16 2.45 8.06 -2.91 -0.02 2.42 16 33 H 0.17 1.93 8.06 -2.91 -0.02 1.90 16 34 H 0.23 2.05 8.06 -2.91 -0.02 2.03 16 35 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.07 2.26 6.21 -2.39 -0.01 2.25 16 38 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -68.68 306.05 2.86 -65.83 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: 0.96 Total: 8.97 kcal Atomic # 6 Polarization: -38.66 SS G_CDS: 3.91 Total: -34.75 kcal Atomic # 7 Polarization: -78.88 SS G_CDS: -3.87 Total: -82.76 kcal Atomic # 8 Polarization: -4.52 SS G_CDS: -0.03 Total: -4.55 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.88 Total: 47.25 kcal Total: -68.68 2.86 -65.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595616278.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.154 kcal (2) G-P(sol) polarization free energy of solvation -68.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds