Wall clock time and date at job start Mon Mar 30 2020 07:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00046 * 2 1 4 4 H 1.48499 * 109.47419 * 240.00571 * 3 2 1 5 5 H 1.48501 * 109.46999 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46890 * 120.00231 * 3 2 1 7 7 C 1.37881 * 119.99872 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00136 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99912 * 359.97438 * 7 2 1 10 10 C 1.53497 * 114.20661 * 179.97438 * 9 7 2 11 11 N 1.47060 * 87.99131 * 220.34364 * 10 9 7 12 12 C 1.34769 * 136.06171 * 207.08700 * 11 10 9 13 13 O 1.21279 * 120.00072 * 359.97438 * 12 11 10 14 14 C 1.50707 * 120.00024 * 179.97438 * 12 11 10 15 15 C 1.53003 * 109.47042 * 179.97438 * 14 12 11 16 16 H 1.09002 * 109.35796 * 54.72269 * 15 14 12 17 17 C 1.50065 * 109.35667 * 295.00163 * 15 14 12 18 18 C 1.29444 * 124.07585 * 222.66234 * 17 15 14 19 19 C 1.50076 * 124.07409 * 0.46662 * 18 17 15 20 20 C 1.53019 * 110.14618 * 342.87111 * 19 18 17 21 21 C 1.53015 * 109.35947 * 174.31088 * 15 14 12 22 22 C 1.47077 * 87.88198 * 27.34104 * 11 10 9 23 23 H 0.96995 * 119.99863 * 359.97438 * 1 2 3 24 24 H 1.09003 * 113.28602 * 313.06356 * 9 7 2 25 25 H 1.09000 * 113.46626 * 105.55984 * 10 9 7 26 26 H 1.09004 * 113.52008 * 335.13543 * 10 9 7 27 27 H 1.08996 * 109.46918 * 60.00231 * 14 12 11 28 28 H 1.09001 * 109.47028 * 299.99625 * 14 12 11 29 29 H 1.08004 * 117.96434 * 42.64183 * 17 15 14 30 30 H 1.08002 * 117.96460 * 180.19240 * 18 17 15 31 31 H 1.08998 * 109.35107 * 103.07595 * 19 18 17 32 32 H 1.09002 * 109.35548 * 222.66187 * 19 18 17 33 33 H 1.09006 * 109.64636 * 289.75252 * 20 19 18 34 34 H 1.09001 * 109.81634 * 169.22154 * 20 19 18 35 35 H 1.08999 * 109.64254 * 289.33355 * 21 15 14 36 36 H 1.09004 * 109.64058 * 49.74539 * 21 15 14 37 37 H 1.08998 * 113.46412 * 87.43694 * 22 11 10 38 38 H 1.08993 * 113.46825 * 217.87665 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.1487 -3.7442 -0.0018 11 7 1.2092 -4.3571 -0.9528 12 6 0.8344 -5.6108 -1.2753 13 8 1.3301 -6.5581 -0.7027 14 6 -0.2005 -5.8357 -2.3474 15 6 -0.4415 -7.3371 -2.5167 16 1 -0.7059 -7.7716 -1.5526 17 6 0.8103 -7.9872 -3.0289 18 6 0.8316 -8.8889 -3.9573 19 6 -0.3917 -9.4031 -4.6583 20 6 -1.6462 -9.0497 -3.8566 21 6 -1.5913 -7.5584 -3.5019 22 6 0.8633 -2.9999 -1.4016 23 1 -0.4850 0.8400 0.0004 24 1 0.4438 -2.5306 0.7313 25 1 2.1858 -4.2536 0.9612 26 1 3.1384 -3.5666 -0.4227 27 1 0.1547 -5.4167 -3.2888 28 1 -1.1322 -5.3478 -2.0610 29 1 1.7521 -7.6836 -2.5961 30 1 1.7898 -9.2934 -4.2485 31 1 -0.4568 -8.9522 -5.6485 32 1 -0.3212 -10.4860 -4.7605 33 1 -1.6761 -9.6428 -2.9424 34 1 -2.5354 -9.2519 -4.4537 35 1 -2.5318 -7.2564 -3.0412 36 1 -1.4196 -6.9702 -4.4034 37 1 1.5137 -2.6251 -2.1919 38 1 -0.1949 -2.8752 -1.6313 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598022792.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:15 Heat of formation + Delta-G solvation = -6.755244 kcal Electronic energy + Delta-G solvation = -17902.834973 eV Core-core repulsion = 15131.832034 eV Total energy + Delta-G solvation = -2771.002938 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.73575 -38.48906 -36.87488 -32.71864 -32.50491 -30.96478 -29.46252 -27.01598 -24.97402 -24.83452 -22.37785 -21.95685 -20.22376 -18.05145 -17.86569 -16.86719 -16.31455 -15.80054 -15.26122 -14.86708 -14.55699 -14.22835 -13.90016 -13.19184 -12.89099 -12.69382 -12.59199 -12.24788 -12.01399 -11.92072 -11.53902 -11.42874 -11.20349 -10.94651 -10.86437 -10.83218 -10.50237 -10.35310 -10.07393 -9.56119 -9.20555 -8.93363 -8.87429 -8.58640 -7.84379 -6.19516 -4.25167 2.44356 3.21445 3.24476 3.29971 3.32040 3.62663 4.32321 4.69253 4.74937 4.81461 5.05836 5.11699 5.21823 5.33121 5.46669 5.49659 5.58373 5.70116 5.74979 5.85812 5.86984 5.91075 6.05497 6.08693 6.18812 6.27492 6.36105 6.39612 6.44845 6.57749 6.66984 6.81158 6.83358 7.08903 7.54237 7.78261 8.17197 8.56407 8.78377 8.80428 9.41659 10.90220 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.048139 B = 0.004062 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.506281 B = 6891.080477 C = 7122.182130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.069 3.931 3 Si 0.896 3.104 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.519 4.519 8 H 0.063 0.937 9 C 0.035 3.965 10 C 0.098 3.902 11 N -0.645 5.645 12 C 0.530 3.470 13 O -0.565 6.565 14 C -0.126 4.126 15 C -0.043 4.043 16 H 0.087 0.913 17 C -0.126 4.126 18 C -0.179 4.179 19 C -0.087 4.087 20 C -0.119 4.119 21 C -0.116 4.116 22 C 0.098 3.902 23 H 0.265 0.735 24 H 0.069 0.931 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.111 0.889 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.078 -11.988 -8.315 14.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.135 4.135 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.557 4.557 8 H 0.081 0.919 9 C 0.016 3.984 10 C -0.024 4.024 11 N -0.379 5.379 12 C 0.320 3.680 13 O -0.445 6.445 14 C -0.166 4.166 15 C -0.062 4.062 16 H 0.105 0.895 17 C -0.144 4.144 18 C -0.197 4.197 19 C -0.124 4.124 20 C -0.157 4.157 21 C -0.154 4.154 22 C -0.025 4.025 23 H 0.074 0.926 24 H 0.087 0.913 25 H 0.074 0.926 26 H 0.090 0.910 27 H 0.107 0.893 28 H 0.110 0.890 29 H 0.129 0.871 30 H 0.116 0.884 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.052 -12.567 -8.076 15.247 hybrid contribution 0.546 1.006 -0.125 1.151 sum -2.507 -11.561 -8.201 14.395 Atomic orbital electron populations 1.69941 1.06072 1.27249 1.49040 1.25026 0.94867 0.99383 0.94206 0.86592 0.79596 0.82625 0.78842 1.20061 1.21208 1.20042 1.20889 0.92995 0.89629 1.52170 0.91910 1.20383 0.94768 0.91140 0.92151 1.23317 0.94325 0.93253 0.91472 1.50070 1.42579 1.05026 1.40191 1.20148 0.83294 0.81039 0.83498 1.90621 1.58222 1.40638 1.55047 1.21601 0.99218 0.97184 0.98607 1.19839 0.93366 0.93506 0.99448 0.89508 1.22236 0.99266 0.96532 0.96318 1.21968 0.98356 1.00019 0.99352 1.20403 0.93110 1.00297 0.98598 1.21585 0.97360 0.96485 1.00242 1.21677 0.97972 0.96460 0.99290 1.23651 0.99728 0.76995 1.02104 0.92569 0.91344 0.92572 0.91047 0.89331 0.88967 0.87138 0.88388 0.91356 0.91634 0.91780 0.91851 0.91560 0.91599 0.90852 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.97 13.26 55.43 0.74 -23.23 16 2 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 19.95 29.54 -169.99 -5.02 14.93 16 4 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.52 -13.17 8.82 -34.44 -0.30 -13.48 16 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.03 0.81 3.80 -91.12 -0.35 0.47 16 10 C 0.10 2.08 8.17 -8.51 -0.07 2.01 16 11 N -0.65 -13.17 3.69 -185.06 -0.68 -13.85 16 12 C 0.53 10.26 7.71 -10.99 -0.08 10.18 16 13 O -0.56 -12.34 15.07 5.56 0.08 -12.25 16 14 C -0.13 -1.89 4.96 -27.88 -0.14 -2.03 16 15 C -0.04 -0.59 2.11 -92.07 -0.19 -0.79 16 16 H 0.09 1.31 7.94 -51.93 -0.41 0.89 16 17 C -0.13 -1.81 8.42 -35.90 -0.30 -2.11 16 18 C -0.18 -2.20 9.80 -35.90 -0.35 -2.55 16 19 C -0.09 -0.87 6.12 -28.17 -0.17 -1.04 16 20 C -0.12 -1.17 6.01 -26.52 -0.16 -1.33 16 21 C -0.12 -1.27 5.30 -26.52 -0.14 -1.41 16 22 C 0.10 2.04 7.99 -8.37 -0.07 1.98 16 23 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 24 H 0.07 1.75 8.11 -51.93 -0.42 1.33 16 25 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.07 1.45 8.10 -51.93 -0.42 1.03 16 27 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 28 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.11 1.85 6.54 -52.48 -0.34 1.51 16 30 H 0.10 1.12 8.06 -52.49 -0.42 0.70 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 37 H 0.07 1.51 8.10 -51.93 -0.42 1.09 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 311.88 15.07 4.70 4.70 Total: -1.00 -27.99 311.88 -8.82 -36.81 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -6.21 Total: 1.31 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -2.43 Total: -8.42 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.05 Total: -37.08 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.08 Total: -12.25 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.99 -8.82 -36.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598022792.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.058 kcal (2) G-P(sol) polarization free energy of solvation -27.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds