Wall clock time and date at job start Mon Mar 30 2020 07:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00046 * 2 1 4 4 H 1.48499 * 109.47419 * 240.00571 * 3 2 1 5 5 H 1.48501 * 109.46999 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46890 * 120.00231 * 3 2 1 7 7 C 1.37881 * 119.99872 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00136 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99912 * 359.97438 * 7 2 1 10 10 C 1.53497 * 114.20661 * 179.97438 * 9 7 2 11 11 N 1.47060 * 87.99131 * 220.34364 * 10 9 7 12 12 C 1.34769 * 136.06171 * 207.08700 * 11 10 9 13 13 O 1.21279 * 120.00072 * 359.97438 * 12 11 10 14 14 C 1.50707 * 120.00024 * 179.97438 * 12 11 10 15 15 C 1.53003 * 109.47042 * 179.97438 * 14 12 11 16 16 H 1.09002 * 109.35796 * 54.72269 * 15 14 12 17 17 C 1.50065 * 109.35667 * 295.00163 * 15 14 12 18 18 C 1.29444 * 124.07585 * 222.66234 * 17 15 14 19 19 C 1.50076 * 124.07409 * 0.46662 * 18 17 15 20 20 C 1.53019 * 110.14618 * 342.87111 * 19 18 17 21 21 C 1.53015 * 109.35947 * 174.31088 * 15 14 12 22 22 C 1.47077 * 87.88198 * 27.34104 * 11 10 9 23 23 H 0.96995 * 119.99863 * 359.97438 * 1 2 3 24 24 H 1.09003 * 113.28602 * 313.06356 * 9 7 2 25 25 H 1.09000 * 113.46626 * 105.55984 * 10 9 7 26 26 H 1.09004 * 113.52008 * 335.13543 * 10 9 7 27 27 H 1.08996 * 109.46918 * 60.00231 * 14 12 11 28 28 H 1.09001 * 109.47028 * 299.99625 * 14 12 11 29 29 H 1.08004 * 117.96434 * 42.64183 * 17 15 14 30 30 H 1.08002 * 117.96460 * 180.19240 * 18 17 15 31 31 H 1.08998 * 109.35107 * 103.07595 * 19 18 17 32 32 H 1.09002 * 109.35548 * 222.66187 * 19 18 17 33 33 H 1.09006 * 109.64636 * 289.75252 * 20 19 18 34 34 H 1.09001 * 109.81634 * 169.22154 * 20 19 18 35 35 H 1.08999 * 109.64254 * 289.33355 * 21 15 14 36 36 H 1.09004 * 109.64058 * 49.74539 * 21 15 14 37 37 H 1.08998 * 113.46412 * 87.43694 * 22 11 10 38 38 H 1.08993 * 113.46825 * 217.87665 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.1487 -3.7442 -0.0018 11 7 1.2092 -4.3571 -0.9528 12 6 0.8344 -5.6108 -1.2753 13 8 1.3301 -6.5581 -0.7027 14 6 -0.2005 -5.8357 -2.3474 15 6 -0.4415 -7.3371 -2.5167 16 1 -0.7059 -7.7716 -1.5526 17 6 0.8103 -7.9872 -3.0289 18 6 0.8316 -8.8889 -3.9573 19 6 -0.3917 -9.4031 -4.6583 20 6 -1.6462 -9.0497 -3.8566 21 6 -1.5913 -7.5584 -3.5019 22 6 0.8633 -2.9999 -1.4016 23 1 -0.4850 0.8400 0.0004 24 1 0.4438 -2.5306 0.7313 25 1 2.1858 -4.2536 0.9612 26 1 3.1384 -3.5666 -0.4227 27 1 0.1547 -5.4167 -3.2888 28 1 -1.1322 -5.3478 -2.0610 29 1 1.7521 -7.6836 -2.5961 30 1 1.7898 -9.2934 -4.2485 31 1 -0.4568 -8.9522 -5.6485 32 1 -0.3212 -10.4860 -4.7605 33 1 -1.6761 -9.6428 -2.9424 34 1 -2.5354 -9.2519 -4.4537 35 1 -2.5318 -7.2564 -3.0412 36 1 -1.4196 -6.9702 -4.4034 37 1 1.5137 -2.6251 -2.1919 38 1 -0.1949 -2.8752 -1.6313 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598022792.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:15 Heat of formation + Delta-G solvation = -21.066276 kcal Electronic energy + Delta-G solvation = -17903.455546 eV Core-core repulsion = 15131.832034 eV Total energy + Delta-G solvation = -2771.623511 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.26041 -39.73034 -38.38483 -34.64652 -33.64189 -31.87984 -31.10447 -28.36283 -26.74818 -26.46633 -23.36998 -23.01529 -21.88314 -19.65952 -18.89792 -18.67623 -17.82738 -16.90157 -16.81736 -16.49916 -16.23907 -15.45263 -15.06021 -14.41718 -14.24119 -14.13554 -13.68343 -13.54343 -13.27777 -13.23077 -13.11178 -12.99835 -12.72533 -12.59491 -12.41649 -12.17557 -11.73196 -11.48068 -11.33542 -11.05088 -11.00535 -10.62184 -10.46609 -9.88323 -9.54221 -8.16339 -6.27646 1.40958 1.49301 1.50061 1.57567 1.66598 2.05465 2.46921 3.13774 3.53521 3.79455 3.81785 4.00099 4.23167 4.26543 4.37133 4.39991 4.47229 4.49355 4.56281 4.68339 4.70491 4.76162 4.78892 4.86637 4.89351 4.99905 5.07129 5.09080 5.11107 5.22201 5.42859 5.49453 5.59177 5.80545 5.81375 6.08432 6.23505 6.80404 6.94772 7.20316 7.42424 8.93447 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.048139 B = 0.004062 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.506281 B = 6891.080477 C = 7122.182130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.023 3.977 3 Si 0.958 3.042 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.532 4.532 8 H 0.065 0.935 9 C 0.022 3.978 10 C 0.102 3.898 11 N -0.649 5.649 12 C 0.524 3.476 13 O -0.592 6.592 14 C -0.118 4.118 15 C -0.038 4.038 16 H 0.066 0.934 17 C -0.157 4.157 18 C -0.160 4.160 19 C -0.088 4.088 20 C -0.119 4.119 21 C -0.112 4.112 22 C 0.114 3.886 23 H 0.265 0.735 24 H 0.039 0.961 25 H 0.052 0.948 26 H 0.081 0.919 27 H 0.103 0.897 28 H 0.106 0.894 29 H 0.077 0.923 30 H 0.104 0.896 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.056 0.944 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.545 -12.401 -10.184 16.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.178 4.178 3 Si 0.784 3.216 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.570 4.570 8 H 0.083 0.917 9 C 0.003 3.997 10 C -0.020 4.020 11 N -0.382 5.382 12 C 0.317 3.683 13 O -0.475 6.475 14 C -0.157 4.157 15 C -0.057 4.057 16 H 0.084 0.916 17 C -0.175 4.175 18 C -0.178 4.178 19 C -0.125 4.125 20 C -0.156 4.156 21 C -0.150 4.150 22 C -0.008 4.008 23 H 0.074 0.926 24 H 0.058 0.942 25 H 0.071 0.929 26 H 0.099 0.901 27 H 0.121 0.879 28 H 0.124 0.876 29 H 0.096 0.904 30 H 0.122 0.878 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.075 0.925 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.514 -12.994 -9.952 16.740 hybrid contribution 0.734 1.038 0.481 1.359 sum -2.780 -11.956 -9.470 15.503 Atomic orbital electron populations 1.70046 1.07384 1.27959 1.50158 1.25749 0.95578 1.02491 0.93946 0.85604 0.78339 0.78677 0.79002 1.19210 1.21162 1.19802 1.21190 0.93302 0.90592 1.51871 0.91680 1.20270 0.94575 0.91633 0.93201 1.23198 0.94600 0.92346 0.91888 1.50114 1.42560 1.05411 1.40126 1.20999 0.83506 0.80006 0.83836 1.90606 1.59296 1.41301 1.56255 1.21661 0.98098 0.98640 0.97341 1.19794 0.94311 0.92137 0.99427 0.91587 1.22072 0.98270 0.98898 0.98256 1.22266 0.99958 0.97955 0.97602 1.20503 0.91760 1.01375 0.98880 1.21612 0.98278 0.95387 1.00334 1.21673 0.96931 0.97611 0.98739 1.23380 1.00049 0.76878 1.00513 0.92587 0.94240 0.92907 0.90127 0.87869 0.87567 0.90448 0.87825 0.89722 0.89936 0.92522 0.89464 0.90453 0.90726 0.90178 0.91781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.89 13.26 21.45 0.28 -49.61 16 2 C 0.02 1.17 5.46 84.65 0.46 1.64 16 3 Si 0.96 40.59 29.54 68.60 2.03 42.62 16 4 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 5 H -0.29 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 7 C -0.53 -27.05 8.82 25.60 0.23 -26.82 16 8 H 0.07 3.21 7.81 -2.91 -0.02 3.18 16 9 C 0.02 1.07 3.80 -11.12 -0.04 1.03 16 10 C 0.10 4.37 8.17 83.18 0.68 5.05 16 11 N -0.65 -26.53 3.69 -857.79 -3.16 -29.70 16 12 C 0.52 20.41 7.71 87.66 0.68 21.08 16 13 O -0.59 -26.50 15.07 -3.03 -0.05 -26.55 16 14 C -0.12 -3.42 4.96 29.85 0.15 -3.27 16 15 C -0.04 -1.01 2.11 -11.73 -0.02 -1.04 16 16 H 0.07 2.00 7.94 -2.39 -0.02 1.98 16 17 C -0.16 -4.47 8.42 27.04 0.23 -4.24 16 18 C -0.16 -3.66 9.80 27.04 0.27 -3.40 16 19 C -0.09 -1.48 6.12 29.66 0.18 -1.30 16 20 C -0.12 -1.97 6.01 30.73 0.18 -1.79 16 21 C -0.11 -2.16 5.30 30.73 0.16 -1.99 16 22 C 0.11 4.75 7.99 83.26 0.67 5.41 16 23 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 24 H 0.04 2.09 8.11 -2.39 -0.02 2.07 16 25 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.08 3.28 8.10 -2.38 -0.02 3.26 16 27 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 28 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 29 H 0.08 2.70 6.54 -2.91 -0.02 2.68 16 30 H 0.10 2.21 8.06 -2.91 -0.02 2.19 16 31 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.06 1.03 8.12 -2.38 -0.02 1.01 16 34 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.07 1.33 8.10 -2.38 -0.02 1.31 16 37 H 0.08 3.22 8.10 -2.39 -0.02 3.20 16 38 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -60.16 311.88 3.93 -56.23 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 1.01 Total: 16.66 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: 3.81 Total: -9.65 kcal Atomic # 7 Polarization: -76.43 SS G_CDS: -2.88 Total: -79.30 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.05 Total: -26.55 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.62 kcal Total: -60.16 3.93 -56.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598022792.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.160 kcal (2) G-P(sol) polarization free energy of solvation -60.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds