Wall clock time and date at job start Mon Mar 30 2020 07:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99896 * 2 1 4 4 H 1.48507 * 109.47145 * 269.99887 * 3 2 1 5 5 H 1.48501 * 109.47643 * 30.00000 * 3 2 1 6 6 H 1.48502 * 109.47394 * 150.00139 * 3 2 1 7 7 C 1.37879 * 120.00043 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99685 * 359.97438 * 7 2 1 9 9 C 1.50692 * 120.00193 * 180.02562 * 7 2 1 10 10 C 1.53495 * 114.20849 * 179.97438 * 9 7 2 11 11 N 1.47065 * 87.98578 * 220.34338 * 10 9 7 12 12 C 1.34779 * 136.05802 * 207.08028 * 11 10 9 13 13 O 1.21282 * 119.99927 * 0.02562 * 12 11 10 14 14 C 1.50699 * 120.00033 * 180.02562 * 12 11 10 15 15 C 1.53006 * 109.46866 * 180.02562 * 14 12 11 16 16 H 1.08995 * 109.35669 * 304.72199 * 15 14 12 17 17 C 1.50068 * 109.35630 * 64.31149 * 15 14 12 18 18 C 1.29451 * 124.07303 * 137.33976 * 17 15 14 19 19 C 1.50070 * 124.07315 * 359.52443 * 18 17 15 20 20 C 1.53026 * 110.14831 * 17.13468 * 19 18 17 21 21 C 1.53025 * 109.35286 * 185.00049 * 15 14 12 22 22 C 1.47059 * 87.88483 * 27.34370 * 11 10 9 23 23 H 0.97001 * 119.99993 * 359.97438 * 1 2 3 24 24 H 1.09001 * 113.28124 * 313.06769 * 9 7 2 25 25 H 1.09000 * 113.46435 * 105.56446 * 10 9 7 26 26 H 1.08999 * 113.46831 * 335.12981 * 10 9 7 27 27 H 1.08993 * 109.47512 * 60.00410 * 14 12 11 28 28 H 1.09000 * 109.47247 * 300.00119 * 14 12 11 29 29 H 1.07990 * 117.96543 * 317.31237 * 17 15 14 30 30 H 1.07998 * 117.95920 * 179.55238 * 18 17 15 31 31 H 1.08997 * 109.35670 * 256.92436 * 19 18 17 32 32 H 1.09001 * 109.24080 * 137.26877 * 19 18 17 33 33 H 1.08999 * 109.63667 * 190.87329 * 20 19 18 34 34 H 1.09000 * 109.63884 * 70.24418 * 20 19 18 35 35 H 1.08999 * 109.64191 * 310.03343 * 21 15 14 36 36 H 1.09001 * 109.64501 * 70.67327 * 21 15 14 37 37 H 1.08999 * 113.47019 * 87.43871 * 22 11 10 38 38 H 1.09002 * 113.46932 * 217.87603 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.1409 -2.5941 0.0023 11 7 5.1410 -2.0870 0.9538 12 6 6.4141 -2.3894 1.2768 13 8 6.9871 -3.2917 0.7037 14 6 7.1255 -1.6065 2.3501 15 6 8.5467 -2.1477 2.5188 16 1 8.5041 -3.2178 2.7213 17 6 9.3213 -1.9138 1.2550 18 6 10.5452 -1.4932 1.2218 19 6 11.3569 -1.1711 2.4422 20 6 10.7152 -1.7970 3.6824 21 6 9.2243 -1.4360 3.6918 22 6 4.1385 -1.1090 1.4024 23 1 -0.4850 0.8401 0.0004 24 1 3.9426 -0.5106 -0.7303 25 1 4.5639 -2.8806 -0.9605 26 1 3.4913 -3.3617 0.4231 27 1 6.5846 -1.7056 3.2911 28 1 7.1688 -0.5554 2.0648 29 1 8.8272 -2.1088 0.3148 30 1 11.0108 -1.3658 0.2557 31 1 11.4066 -0.0895 2.5679 32 1 12.3648 -1.5671 2.3181 33 1 11.1930 -1.4042 4.5799 34 1 10.8296 -2.8804 3.6468 35 1 9.1078 -0.3577 3.5829 36 1 8.7740 -1.7636 4.6288 37 1 3.4884 -1.4850 2.1924 38 1 4.5595 -0.1303 1.6325 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598022794.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:19 Heat of formation + Delta-G solvation = -19.288898 kcal Electronic energy + Delta-G solvation = -18017.954227 eV Core-core repulsion = 15246.407789 eV Total energy + Delta-G solvation = -2771.546439 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.33445 -39.78691 -38.43130 -34.66735 -33.65411 -31.87544 -31.43978 -28.56694 -26.73608 -26.55652 -23.32839 -22.97407 -21.68693 -19.75294 -19.12335 -18.84135 -17.96248 -16.91814 -16.75397 -16.67370 -16.03243 -15.33354 -15.07484 -14.81809 -14.44228 -14.21709 -13.70021 -13.54503 -13.49098 -13.35993 -13.18514 -13.00041 -12.61488 -12.53214 -12.35990 -11.82484 -11.72581 -11.61184 -11.40882 -11.21624 -11.02075 -10.71638 -10.55036 -9.88228 -9.60497 -8.27261 -6.35284 1.40792 1.42746 1.44991 1.55338 1.64982 2.00411 2.39610 3.04552 3.50466 3.79253 3.81282 3.98976 4.03937 4.23784 4.29570 4.35685 4.47320 4.48996 4.50550 4.61890 4.70183 4.73163 4.78748 4.81348 4.83085 4.87606 5.00489 5.08712 5.09952 5.22591 5.36850 5.43033 5.49809 5.60813 5.80678 6.08810 6.28564 6.70945 6.90134 7.17470 7.32593 8.88365 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.036294 B = 0.004706 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.296454 B = 5948.434528 C = 6264.803880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.020 3.980 3 Si 0.941 3.059 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.228 1.228 7 C -0.515 4.515 8 H 0.039 0.961 9 C -0.015 4.015 10 C 0.111 3.889 11 N -0.649 5.649 12 C 0.527 3.473 13 O -0.590 6.590 14 C -0.120 4.120 15 C -0.039 4.039 16 H 0.068 0.932 17 C -0.157 4.157 18 C -0.162 4.162 19 C -0.089 4.089 20 C -0.119 4.119 21 C -0.111 4.111 22 C 0.099 3.901 23 H 0.268 0.732 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.114 0.886 28 H 0.104 0.896 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.308 2.039 8.956 22.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.178 4.178 3 Si 0.764 3.236 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.150 1.150 7 C -0.553 4.553 8 H 0.058 0.942 9 C -0.034 4.034 10 C -0.012 4.012 11 N -0.383 5.383 12 C 0.319 3.681 13 O -0.471 6.471 14 C -0.159 4.159 15 C -0.057 4.057 16 H 0.086 0.914 17 C -0.175 4.175 18 C -0.180 4.180 19 C -0.126 4.126 20 C -0.157 4.157 21 C -0.149 4.149 22 C -0.023 4.023 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.133 0.867 28 H 0.122 0.878 29 H 0.096 0.904 30 H 0.119 0.881 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 20.681 1.620 8.724 22.504 hybrid contribution -0.634 0.250 -0.673 0.958 sum 20.047 1.870 8.051 21.684 Atomic orbital electron populations 1.70044 1.08473 1.28405 1.51424 1.25880 0.95329 1.03178 0.93423 0.85848 0.80385 0.78326 0.79039 1.20159 1.21310 1.15017 1.20938 0.89750 0.93438 1.51210 0.94236 1.20724 0.94275 0.94150 0.94288 1.22967 0.87270 0.98554 0.92374 1.50037 1.10456 1.37550 1.40207 1.21027 0.79697 0.83485 0.83891 1.90628 1.66386 1.34010 1.56110 1.21697 0.95881 1.00643 0.97675 1.19812 0.91811 1.00038 0.94059 0.91393 1.22113 0.96416 1.00576 0.98387 1.22265 0.95435 1.00462 0.99875 1.20509 0.98537 1.01517 0.92013 1.21620 0.95102 1.00669 0.98281 1.21674 0.95741 1.00688 0.96767 1.23713 0.86799 0.91868 0.99932 0.92302 0.91699 0.92171 0.90649 0.86743 0.87804 0.90425 0.88106 0.89801 0.90132 0.89522 0.92492 0.90738 0.90115 0.89507 0.89924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.54 13.96 21.45 0.30 -55.24 16 2 C 0.02 1.09 5.47 84.66 0.46 1.56 16 3 Si 0.94 39.75 27.15 68.60 1.86 41.61 16 4 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 5 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.23 -8.30 5.72 99.48 0.57 -7.73 16 7 C -0.52 -27.01 9.37 25.60 0.24 -26.77 16 8 H 0.04 2.32 8.06 -2.91 -0.02 2.30 16 9 C -0.01 -0.63 2.98 -11.12 -0.03 -0.66 16 10 C 0.11 4.46 8.17 83.17 0.68 5.14 16 11 N -0.65 -23.91 3.69 -857.90 -3.16 -27.07 16 12 C 0.53 18.56 7.71 87.66 0.68 19.24 16 13 O -0.59 -24.66 15.02 -3.04 -0.05 -24.70 16 14 C -0.12 -3.01 4.97 29.85 0.15 -2.86 16 15 C -0.04 -0.92 2.12 -11.73 -0.02 -0.95 16 16 H 0.07 1.85 7.96 -2.39 -0.02 1.83 16 17 C -0.16 -4.21 8.41 27.03 0.23 -3.99 16 18 C -0.16 -3.56 9.80 27.03 0.27 -3.30 16 19 C -0.09 -1.40 6.11 29.66 0.18 -1.22 16 20 C -0.12 -1.78 6.01 30.73 0.18 -1.60 16 21 C -0.11 -1.86 5.30 30.73 0.16 -1.69 16 22 C 0.10 3.57 7.43 83.26 0.62 4.19 16 23 H 0.27 14.75 8.31 -92.71 -0.77 13.97 16 24 H 0.07 2.72 7.03 -2.39 -0.02 2.70 16 25 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.08 3.05 8.10 -2.39 -0.02 3.03 16 27 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.08 2.60 6.47 -2.92 -0.02 2.58 16 30 H 0.10 2.11 8.06 -2.91 -0.02 2.08 16 31 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.06 0.94 8.12 -2.39 -0.02 0.92 16 35 H 0.07 1.15 8.10 -2.39 -0.02 1.13 16 36 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.09 3.11 8.10 -2.39 -0.02 3.09 16 38 H 0.08 2.60 7.15 -2.39 -0.02 2.59 16 Total: -1.00 -64.53 306.05 3.62 -60.90 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.88 Total: 17.41 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: 3.79 Total: -12.91 kcal Atomic # 7 Polarization: -79.45 SS G_CDS: -2.86 Total: -82.31 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.05 Total: -24.70 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 1.86 Total: 41.61 kcal Total: -64.53 3.62 -60.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598022794.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.616 kcal (2) G-P(sol) polarization free energy of solvation -64.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds