Wall clock time and date at job start Mon Mar 30 2020 07:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99989 * 2 1 4 4 H 1.48499 * 109.46917 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46910 * 299.99248 * 3 2 1 6 6 H 1.48493 * 109.47283 * 59.99298 * 3 2 1 7 7 C 1.37877 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00059 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00302 * 0.02562 * 7 2 1 10 10 C 1.53493 * 114.20869 * 179.97438 * 9 7 2 11 11 N 1.47072 * 87.98289 * 220.14500 * 10 9 7 12 12 C 1.34772 * 136.05352 * 207.08360 * 11 10 9 13 13 O 1.21613 * 120.00577 * 4.99326 * 12 11 10 14 14 C 1.47107 * 119.99938 * 184.99815 * 12 11 10 15 15 C 1.31562 * 119.84861 * 281.33497 * 14 12 11 16 16 C 1.51412 * 120.29207 * 179.97438 * 15 14 12 17 17 C 1.53037 * 108.57342 * 71.58442 * 16 15 14 18 18 C 1.51779 * 110.81030 * 274.28953 * 17 16 15 19 19 C 1.51785 * 113.84445 * 66.93943 * 18 17 16 20 20 C 1.51401 * 119.85456 * 101.30758 * 14 12 11 21 21 C 1.47066 * 87.88506 * 27.34057 * 11 10 9 22 22 H 0.97000 * 119.99897 * 0.02562 * 1 2 3 23 23 H 1.09008 * 113.27511 * 313.06399 * 9 7 2 24 24 H 1.08996 * 113.46745 * 105.36736 * 10 9 7 25 25 H 1.08995 * 113.52236 * 334.93287 * 10 9 7 26 26 H 1.07995 * 119.85857 * 359.97111 * 15 14 12 27 27 H 1.08998 * 109.61517 * 311.86372 * 16 15 14 28 28 H 1.08998 * 109.62071 * 191.31405 * 16 15 14 29 29 H 1.09002 * 109.20702 * 153.95033 * 17 16 15 30 30 H 1.08998 * 109.21061 * 34.63507 * 17 16 15 31 31 H 1.08995 * 108.61047 * 188.07241 * 18 17 16 32 32 H 1.09001 * 108.61312 * 305.81569 * 18 17 16 33 33 H 1.09003 * 109.20388 * 53.39882 * 19 18 17 34 34 H 1.09001 * 109.21079 * 172.76167 * 19 18 17 35 35 H 1.08997 * 109.62136 * 348.71322 * 20 14 12 36 36 H 1.09000 * 109.61955 * 228.15962 * 20 14 12 37 37 H 1.09004 * 113.46392 * 87.43809 * 21 11 10 38 38 H 1.08992 * 113.46468 * 217.87238 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8903 2.3965 1.2123 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.1488 -3.7442 0.0005 11 7 1.2072 -4.3593 -0.9471 12 6 0.8318 -5.6139 -1.2657 13 8 1.2610 -6.5572 -0.6294 14 6 -0.0970 -5.8423 -2.3833 15 6 -1.3864 -5.6424 -2.2144 16 6 -2.3513 -5.8739 -3.3581 17 6 -2.4641 -7.3802 -3.6035 18 6 -1.3620 -7.8595 -4.5306 19 6 0.0288 -7.7665 -3.9300 20 6 0.4351 -6.3057 -3.7229 21 6 0.8604 -3.0033 -1.3985 22 1 -0.4850 0.8401 -0.0004 23 1 0.4433 -2.5302 0.7318 24 1 2.1878 -4.2512 0.9646 25 1 3.1375 -3.5676 -0.4229 26 1 -1.7582 -5.3119 -1.2559 27 1 -1.9777 -5.3836 -4.2570 28 1 -3.3302 -5.4711 -3.0982 29 1 -3.4322 -7.5986 -4.0543 30 1 -2.3858 -7.9055 -2.6517 31 1 -1.5577 -8.8984 -4.7956 32 1 -1.3884 -7.2607 -5.4410 33 1 0.0396 -8.2813 -2.9692 34 1 0.7421 -8.2448 -4.6012 35 1 1.5219 -6.2230 -3.7335 36 1 0.0108 -5.6918 -4.5174 37 1 1.5092 -2.6305 -2.1910 38 1 -0.1982 -2.8792 -1.6263 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598023553.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:54 Heat of formation + Delta-G solvation = -5.819449 kcal Electronic energy + Delta-G solvation = -18260.163680 eV Core-core repulsion = 15489.201320 eV Total energy + Delta-G solvation = -2770.962359 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.74014 -38.25565 -36.76312 -32.80404 -32.49431 -31.88080 -29.10153 -25.95059 -24.97765 -24.80742 -24.00853 -21.03778 -20.35683 -19.14338 -17.44242 -16.84187 -16.33579 -15.67585 -15.32958 -14.66999 -14.42465 -14.21772 -13.66551 -13.40639 -13.12279 -12.86988 -12.58245 -12.30478 -11.82326 -11.57451 -11.52545 -11.31669 -11.08581 -10.93534 -10.78456 -10.72704 -10.66973 -10.50568 -10.35405 -9.58470 -9.21415 -8.96519 -8.78413 -8.58772 -7.85177 -6.19173 -4.24686 2.12090 3.13761 3.22169 3.31171 3.34656 3.70468 4.32780 4.65292 4.81685 4.84646 5.04550 5.11886 5.14296 5.19223 5.40206 5.51949 5.65562 5.73755 5.79591 5.85312 6.01537 6.05620 6.06519 6.14690 6.17616 6.20202 6.26432 6.37250 6.44425 6.58102 6.60906 6.73074 6.83151 6.88535 7.54869 7.78728 8.17533 8.52058 8.76909 8.79758 9.42214 10.90669 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.034655 B = 0.005001 C = 0.004679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.778158 B = 5597.731544 C = 5982.834297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.068 3.932 3 Si 0.895 3.105 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.516 4.516 8 H 0.064 0.936 9 C 0.035 3.965 10 C 0.098 3.902 11 N -0.638 5.638 12 C 0.571 3.429 13 O -0.564 6.564 14 C -0.143 4.143 15 C -0.119 4.119 16 C -0.088 4.088 17 C -0.114 4.114 18 C -0.117 4.117 19 C -0.114 4.114 20 C -0.067 4.067 21 C 0.101 3.899 22 H 0.263 0.737 23 H 0.068 0.932 24 H 0.057 0.943 25 H 0.074 0.926 26 H 0.112 0.888 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.915 -9.793 -9.023 13.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.135 4.135 3 Si 0.723 3.277 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.555 4.555 8 H 0.082 0.918 9 C 0.015 3.985 10 C -0.024 4.024 11 N -0.371 5.371 12 C 0.361 3.639 13 O -0.444 6.444 14 C -0.146 4.146 15 C -0.138 4.138 16 C -0.125 4.125 17 C -0.152 4.152 18 C -0.154 4.154 19 C -0.152 4.152 20 C -0.104 4.104 21 C -0.021 4.021 22 H 0.073 0.927 23 H 0.086 0.914 24 H 0.075 0.925 25 H 0.092 0.908 26 H 0.130 0.870 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.909 -10.380 -8.746 14.125 hybrid contribution 0.396 0.997 -0.028 1.073 sum -3.513 -9.384 -8.773 13.318 Atomic orbital electron populations 1.69965 1.06084 1.27014 1.49193 1.25030 0.94856 0.99403 0.94221 0.86483 0.80210 0.83313 0.77717 1.19544 1.20896 1.20853 1.20949 0.93051 0.89533 1.51920 0.91769 1.20394 0.94728 0.91145 0.92190 1.23358 0.94269 0.93212 0.91579 1.50074 1.42102 1.04873 1.40001 1.18078 0.81316 0.81273 0.83282 1.90735 1.58369 1.41492 1.53845 1.21151 0.94568 1.03125 0.95771 1.22959 0.93631 0.97697 0.99544 1.20836 0.98431 0.96337 0.96946 1.21273 0.98255 0.95418 1.00253 1.21133 0.94623 1.00977 0.98709 1.21280 0.96240 0.95962 1.01691 1.20596 1.00724 0.96238 0.92883 1.23643 0.99829 0.76706 1.01957 0.92689 0.91388 0.92460 0.90816 0.86958 0.90673 0.91035 0.91836 0.91707 0.92428 0.92315 0.91280 0.91785 0.91450 0.90384 0.90910 0.92180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.10 13.26 55.43 0.74 -23.37 16 2 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.01 29.54 -169.99 -5.02 14.99 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.52 -13.18 8.83 -34.44 -0.30 -13.48 16 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.03 0.82 3.79 -91.13 -0.35 0.48 16 10 C 0.10 2.10 8.18 -8.50 -0.07 2.03 16 11 N -0.64 -13.51 3.69 -186.46 -0.69 -14.20 16 12 C 0.57 11.87 7.35 -12.66 -0.09 11.77 16 13 O -0.56 -13.41 17.88 5.27 0.09 -13.32 16 14 C -0.14 -2.38 4.68 -102.53 -0.48 -2.86 16 15 C -0.12 -1.78 9.04 -35.81 -0.32 -2.11 16 16 C -0.09 -1.01 5.62 -27.51 -0.15 -1.16 16 17 C -0.11 -1.17 5.66 -27.33 -0.15 -1.33 16 18 C -0.12 -1.15 5.27 -27.97 -0.15 -1.30 16 19 C -0.11 -1.35 5.66 -27.33 -0.15 -1.50 16 20 C -0.07 -0.91 5.47 -27.52 -0.15 -1.06 16 21 C 0.10 2.17 7.98 -8.37 -0.07 2.11 16 22 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 23 H 0.07 1.76 8.11 -51.92 -0.42 1.34 16 24 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.07 1.51 8.10 -51.93 -0.42 1.09 16 26 H 0.11 1.79 8.04 -52.49 -0.42 1.37 16 27 H 0.07 0.82 6.74 -51.93 -0.35 0.47 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.73 7.85 -51.93 -0.41 0.33 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.53 7.88 -51.93 -0.41 0.12 16 33 H 0.07 0.95 7.85 -51.93 -0.41 0.54 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.96 8.02 -51.93 -0.42 0.54 16 36 H 0.08 0.94 6.74 -51.93 -0.35 0.59 16 37 H 0.07 1.53 8.10 -51.93 -0.42 1.11 16 38 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 311.09 15.07 4.69 4.69 Total: -1.00 -28.93 311.09 -8.84 -37.77 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -6.11 Total: 0.17 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -2.54 Total: -6.73 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.05 Total: -37.57 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.09 Total: -13.32 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.93 -8.84 -37.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598023553.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.951 kcal (2) G-P(sol) polarization free energy of solvation -28.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds