Wall clock time and date at job start Mon Mar 30 2020 07:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99989 * 2 1 4 4 H 1.48499 * 109.46917 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46910 * 299.99248 * 3 2 1 6 6 H 1.48493 * 109.47283 * 59.99298 * 3 2 1 7 7 C 1.37877 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00059 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00302 * 0.02562 * 7 2 1 10 10 C 1.53493 * 114.20869 * 179.97438 * 9 7 2 11 11 N 1.47072 * 87.98289 * 220.14500 * 10 9 7 12 12 C 1.34772 * 136.05352 * 207.08360 * 11 10 9 13 13 O 1.21613 * 120.00577 * 4.99326 * 12 11 10 14 14 C 1.47107 * 119.99938 * 184.99815 * 12 11 10 15 15 C 1.31562 * 119.84861 * 281.33497 * 14 12 11 16 16 C 1.51412 * 120.29207 * 179.97438 * 15 14 12 17 17 C 1.53037 * 108.57342 * 71.58442 * 16 15 14 18 18 C 1.51779 * 110.81030 * 274.28953 * 17 16 15 19 19 C 1.51785 * 113.84445 * 66.93943 * 18 17 16 20 20 C 1.51401 * 119.85456 * 101.30758 * 14 12 11 21 21 C 1.47066 * 87.88506 * 27.34057 * 11 10 9 22 22 H 0.97000 * 119.99897 * 0.02562 * 1 2 3 23 23 H 1.09008 * 113.27511 * 313.06399 * 9 7 2 24 24 H 1.08996 * 113.46745 * 105.36736 * 10 9 7 25 25 H 1.08995 * 113.52236 * 334.93287 * 10 9 7 26 26 H 1.07995 * 119.85857 * 359.97111 * 15 14 12 27 27 H 1.08998 * 109.61517 * 311.86372 * 16 15 14 28 28 H 1.08998 * 109.62071 * 191.31405 * 16 15 14 29 29 H 1.09002 * 109.20702 * 153.95033 * 17 16 15 30 30 H 1.08998 * 109.21061 * 34.63507 * 17 16 15 31 31 H 1.08995 * 108.61047 * 188.07241 * 18 17 16 32 32 H 1.09001 * 108.61312 * 305.81569 * 18 17 16 33 33 H 1.09003 * 109.20388 * 53.39882 * 19 18 17 34 34 H 1.09001 * 109.21079 * 172.76167 * 19 18 17 35 35 H 1.08997 * 109.62136 * 348.71322 * 20 14 12 36 36 H 1.09000 * 109.61955 * 228.15962 * 20 14 12 37 37 H 1.09004 * 113.46392 * 87.43809 * 21 11 10 38 38 H 1.08992 * 113.46468 * 217.87238 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8903 2.3965 1.2123 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.1488 -3.7442 0.0005 11 7 1.2072 -4.3593 -0.9471 12 6 0.8318 -5.6139 -1.2657 13 8 1.2610 -6.5572 -0.6294 14 6 -0.0970 -5.8423 -2.3833 15 6 -1.3864 -5.6424 -2.2144 16 6 -2.3513 -5.8739 -3.3581 17 6 -2.4641 -7.3802 -3.6035 18 6 -1.3620 -7.8595 -4.5306 19 6 0.0288 -7.7665 -3.9300 20 6 0.4351 -6.3057 -3.7229 21 6 0.8604 -3.0033 -1.3985 22 1 -0.4850 0.8401 -0.0004 23 1 0.4433 -2.5302 0.7318 24 1 2.1878 -4.2512 0.9646 25 1 3.1375 -3.5676 -0.4229 26 1 -1.7582 -5.3119 -1.2559 27 1 -1.9777 -5.3836 -4.2570 28 1 -3.3302 -5.4711 -3.0982 29 1 -3.4322 -7.5986 -4.0543 30 1 -2.3858 -7.9055 -2.6517 31 1 -1.5577 -8.8984 -4.7956 32 1 -1.3884 -7.2607 -5.4410 33 1 0.0396 -8.2813 -2.9692 34 1 0.7421 -8.2448 -4.6012 35 1 1.5219 -6.2230 -3.7335 36 1 0.0108 -5.6918 -4.5174 37 1 1.5092 -2.6305 -2.1910 38 1 -0.1982 -2.8792 -1.6263 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598023553.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:54 Heat of formation + Delta-G solvation = -21.347222 kcal Electronic energy + Delta-G solvation = -18260.837014 eV Core-core repulsion = 15489.201320 eV Total energy + Delta-G solvation = -2771.635694 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.34957 -39.55606 -38.37017 -34.68062 -33.72388 -32.84640 -30.85749 -27.51528 -26.75464 -26.14281 -25.14602 -22.63342 -21.30380 -20.68045 -19.01730 -18.63884 -17.76851 -17.29094 -16.73201 -16.35282 -15.84991 -15.52575 -14.85462 -14.56605 -14.34854 -14.14318 -14.00105 -13.93360 -13.30843 -13.23797 -12.98815 -12.77742 -12.62789 -12.59109 -12.20059 -12.11916 -11.63974 -11.53253 -11.41249 -11.30944 -11.09956 -10.70511 -10.54089 -9.96806 -9.62556 -8.17773 -6.29408 0.85956 1.46261 1.49468 1.50021 1.60527 2.07174 2.46104 3.12274 3.44473 3.74461 3.96236 4.06716 4.14254 4.20084 4.21550 4.34354 4.44542 4.49062 4.56511 4.65224 4.72213 4.75236 4.82730 4.87164 4.94454 4.96876 5.03453 5.21951 5.24352 5.27584 5.32805 5.48808 5.54104 5.56290 5.69499 5.79412 6.20662 6.79297 6.81800 7.06558 7.40930 8.92663 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.034655 B = 0.005001 C = 0.004679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.778158 B = 5597.731544 C = 5982.834297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.022 3.978 3 Si 0.960 3.040 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.283 1.283 7 C -0.528 4.528 8 H 0.068 0.932 9 C 0.024 3.976 10 C 0.101 3.899 11 N -0.640 5.640 12 C 0.566 3.434 13 O -0.600 6.600 14 C -0.165 4.165 15 C -0.109 4.109 16 C -0.084 4.084 17 C -0.113 4.113 18 C -0.115 4.115 19 C -0.111 4.111 20 C -0.062 4.062 21 C 0.119 3.881 22 H 0.265 0.735 23 H 0.037 0.963 24 H 0.054 0.946 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.042 0.958 34 H 0.080 0.920 35 H 0.055 0.945 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.238 -9.745 -11.121 15.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.178 4.178 3 Si 0.786 3.214 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.209 1.209 7 C -0.566 4.566 8 H 0.086 0.914 9 C 0.005 3.995 10 C -0.021 4.021 11 N -0.372 5.372 12 C 0.358 3.642 13 O -0.483 6.483 14 C -0.167 4.167 15 C -0.128 4.128 16 C -0.121 4.121 17 C -0.150 4.150 18 C -0.153 4.153 19 C -0.149 4.149 20 C -0.100 4.100 21 C -0.004 4.004 22 H 0.074 0.926 23 H 0.055 0.945 24 H 0.073 0.927 25 H 0.106 0.894 26 H 0.112 0.888 27 H 0.107 0.893 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.061 0.939 34 H 0.098 0.902 35 H 0.074 0.926 36 H 0.118 0.882 37 H 0.100 0.900 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.228 -10.337 -10.850 15.571 hybrid contribution 0.476 0.950 0.715 1.280 sum -3.752 -9.387 -10.135 14.315 Atomic orbital electron populations 1.70071 1.07493 1.27871 1.50257 1.25775 0.95565 1.02611 0.93889 0.85466 0.79206 0.79187 0.77563 1.18768 1.20440 1.20933 1.21223 0.93359 0.90327 1.51675 0.91412 1.20267 0.94505 0.91807 0.92926 1.23283 0.94650 0.92170 0.91967 1.50122 1.42048 1.05177 1.39890 1.18869 0.81271 0.80356 0.83754 1.90701 1.59913 1.42343 1.55375 1.21171 0.94264 1.05460 0.95828 1.23217 0.93821 0.95610 1.00175 1.20934 0.97906 0.97626 0.95668 1.21281 0.99851 0.94007 0.99866 1.21132 0.92857 1.02378 0.98896 1.21275 0.98316 0.94398 1.00896 1.20669 1.00037 0.97744 0.91527 1.23380 0.99757 0.76540 1.00681 0.92586 0.94453 0.92712 0.89415 0.88798 0.89268 0.89690 0.89286 0.93389 0.90887 0.90530 0.93942 0.90151 0.92628 0.88164 0.90004 0.92448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.37 13.26 21.45 0.28 -50.09 16 2 C 0.02 1.13 5.46 84.65 0.46 1.60 16 3 Si 0.96 40.68 29.54 68.60 2.03 42.71 16 4 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 5 H -0.28 -11.55 7.11 99.48 0.71 -10.85 16 6 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.53 -26.95 8.83 25.60 0.23 -26.73 16 8 H 0.07 3.34 7.81 -2.91 -0.02 3.32 16 9 C 0.02 1.18 3.79 -11.12 -0.04 1.13 16 10 C 0.10 4.41 8.18 83.18 0.68 5.09 16 11 N -0.64 -27.50 3.69 -862.09 -3.18 -30.68 16 12 C 0.57 23.95 7.35 86.57 0.64 24.58 16 13 O -0.60 -29.35 17.88 -4.07 -0.07 -29.42 16 14 C -0.16 -5.41 4.68 -17.88 -0.08 -5.49 16 15 C -0.11 -3.19 9.04 25.34 0.23 -2.97 16 16 C -0.08 -1.70 5.62 30.09 0.17 -1.54 16 17 C -0.11 -1.98 5.66 30.21 0.17 -1.81 16 18 C -0.12 -1.88 5.27 29.79 0.16 -1.73 16 19 C -0.11 -2.43 5.66 30.21 0.17 -2.25 16 20 C -0.06 -1.60 5.47 30.08 0.16 -1.44 16 21 C 0.12 5.13 7.98 83.27 0.66 5.79 16 22 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 23 H 0.04 2.02 8.11 -2.38 -0.02 2.00 16 24 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 25 H 0.09 3.56 8.10 -2.39 -0.02 3.54 16 26 H 0.09 3.05 8.04 -2.91 -0.02 3.03 16 27 H 0.09 1.61 6.74 -2.39 -0.02 1.60 16 28 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.05 1.01 7.85 -2.39 -0.02 0.99 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 32 H 0.08 1.03 7.88 -2.39 -0.02 1.01 16 33 H 0.04 1.15 7.85 -2.39 -0.02 1.13 16 34 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.05 1.54 8.02 -2.39 -0.02 1.52 16 36 H 0.10 2.11 6.74 -2.39 -0.02 2.10 16 37 H 0.08 3.39 8.10 -2.39 -0.02 3.37 16 38 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -62.59 311.09 3.69 -58.90 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 1.02 Total: 14.33 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: 3.61 Total: -5.75 kcal Atomic # 7 Polarization: -77.87 SS G_CDS: -2.89 Total: -80.76 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -0.07 Total: -29.42 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Total: -62.59 3.69 -58.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598023553.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.555 kcal (2) G-P(sol) polarization free energy of solvation -62.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds